@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.3.0 → 2.3.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +2 -1
- package/.turbo/turbo-test.log +11 -10
- package/CHANGELOG.md +14 -0
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
- package/dist/tengo/tpl/list-presets.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
- package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
- package/package.json +6 -6
- package/src/main.tpl.tengo +0 -5
- package/src/mixcr-analyze.tpl.tengo +0 -4
- package/src/mixcr-export.tpl.tengo +1 -1
- package/src/process-single-cell.tpl.tengo +1 -2
- package/src/process.tpl.tengo +0 -7
- package/src/test/columns-calculate.tpl.tengo +1 -1
package/.turbo/turbo-build.log
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.3.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.3.2 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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info: Skipping unknown file type: test/columns.test.ts
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package/.turbo/turbo-test.log
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WARN Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.3.
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> @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.3.2 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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> vitest
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[1m[7m[36m RUN [39m[27m[22m [36mv2.1.8 [39m[90m/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow[39m
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[32m✓[39m src/test/columns.test.ts [2m([22m[2m6 tests[22m[2m)[22m[33m
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[33m[2m✓[22m[39m checking preset for 'milab-human-dna-xcr-7genes-multiplex' [
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[33m[2m✓[22m[39m checking preset for '10x-sc-xcr-vdj' [
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[33m[2m✓[22m[39m checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' [
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[33m[2m✓[22m[39m checking preset for 'takara-human-rna-bcr-umi-smartseq' [
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[33m[2m✓[22m[39m checking preset for 'rna-seq' [
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[33m[2m✓[22m[39m checking preset for 'generic-single-cell-gex' [
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[32m✓[39m src/test/columns.test.ts [2m([22m[2m6 tests[22m[2m)[22m[33m 54369[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for 'milab-human-dna-xcr-7genes-multiplex' [33m14157[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for '10x-sc-xcr-vdj' [33m8552[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' [33m8021[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for 'takara-human-rna-bcr-umi-smartseq' [33m8026[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for 'rna-seq' [33m7808[2mms[22m[39m
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[33m[2m✓[22m[39m checking preset for 'generic-single-cell-gex' [33m7805[2mms[22m[39m
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[2m Test Files [22m [1m[32m1 passed[39m[22m[90m (1)[39m
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[2m Tests [22m [1m[32m6 passed[39m[22m[90m (6)[39m
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[2m Start at [22m
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[2m Duration [22m
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[2m Start at [22m 10:42:09
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[2m Duration [22m 55.30s[2m (transform 51ms, setup 0ms, collect 584ms, tests 54.37s, environment 0ms, prepare 94ms)[22m
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-clonotyping.workflow
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## 2.3.2
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### Patch Changes
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- 43d3a75: updated MiXCR
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## 2.3.1
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### Patch Changes
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- e108f59: Dependency upgrade
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- Updated dependencies [e108f59]
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- @platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts@1.1.0
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## 2.3.0
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### Minor Changes
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package/package.json
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{
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"name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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"version": "2.3.
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"version": "2.3.2",
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"description": "Tengo-based template",
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"dependencies": {
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"@platforma-sdk/workflow-tengo": "^3.
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"@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.0
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"@platforma-sdk/workflow-tengo": "^3.1.0",
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"@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.1.0"
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},
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"devDependencies": {
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"@platforma-sdk/tengo-builder": "^2.0.
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-
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"@platforma-sdk/tengo-builder": "^2.0.2",
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"@platforma-open/milaboratories.software-mixcr": "4.7.0-149-develop",
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"@platforma-open/milaboratories.software-ptransform": "^1.3.1",
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"@platforma-sdk/test": "^1.
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"@platforma-sdk/test": "^1.25.0",
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"vitest": "^2.1.8",
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"typescript": "~5.5.4"
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},
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package/src/main.tpl.tengo
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assets := import("@platforma-sdk/workflow-tengo:assets")
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smart := import("@platforma-sdk/workflow-tengo:smart")
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file := import("@platforma-sdk/workflow-tengo:file")
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llPFrames := import("@platforma-sdk/workflow-tengo:pframes.ll")
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pframes := import("@platforma-sdk/workflow-tengo:pframes")
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exec := import("@platforma-sdk/workflow-tengo:exec")
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self := import("@platforma-sdk/workflow-tengo:tpl")
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json := import("json")
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calculatePresetInfoTpl := assets.importTemplate(":calculate-preset-info")
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processTpl := assets.importTemplate(":process")
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ll := import("@platforma-sdk/workflow-tengo:ll")
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exec := import("@platforma-sdk/workflow-tengo:exec")
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assets := import("@platforma-sdk/workflow-tengo:assets")
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render := import("@platforma-sdk/workflow-tengo:render")
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pframes := import("@platforma-sdk/workflow-tengo:pframes")
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pcolumn := import("@platforma-sdk/workflow-tengo:pframes.pcolumn")
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xsv := import("@platforma-sdk/workflow-tengo:pframes.xsv")
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file := import("@platforma-sdk/workflow-tengo:file")
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times := import("times")
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json := import("json")
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ll := import("@platforma-sdk/workflow-tengo:ll")
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self := import("@platforma-sdk/workflow-tengo:tpl")
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self := import("@platforma-sdk/workflow-tengo:tpl.light")
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pConstants := import("@platforma-sdk/workflow-tengo:pframes.constants")
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smart := import("@platforma-sdk/workflow-tengo:smart")
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assets := import("@platforma-sdk/workflow-tengo:assets")
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ll := import("@platforma-sdk/workflow-tengo:ll")
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self := import("@platforma-sdk/workflow-tengo:tpl")
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self := import("@platforma-sdk/workflow-tengo:tpl.light")
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pConstants := import("@platforma-sdk/workflow-tengo:pframes.constants")
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slices := import("@platforma-sdk/workflow-tengo:slices")
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assets := import("@platforma-sdk/workflow-tengo:assets")
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exec := import("@platforma-sdk/workflow-tengo:exec")
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package/src/process.tpl.tengo
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self := import("@platforma-sdk/workflow-tengo:tpl")
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ll := import("@platforma-sdk/workflow-tengo:ll")
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render := import("@platforma-sdk/workflow-tengo:render")
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assets := import("@platforma-sdk/workflow-tengo:assets")
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pframes := import("@platforma-sdk/workflow-tengo:pframes")
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smart := import("@platforma-sdk/workflow-tengo:smart")
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slices := import("@platforma-sdk/workflow-tengo:slices")
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maps := import("@platforma-sdk/workflow-tengo:maps")
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file := import("@platforma-sdk/workflow-tengo:file")
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llPFrames := import("@platforma-sdk/workflow-tengo:pframes.ll")
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pSpec := import("@platforma-sdk/workflow-tengo:pframes.spec")
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pUtil := import("@platforma-sdk/workflow-tengo:pframes.util")
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pConstants := import("@platforma-sdk/workflow-tengo:pframes.constants")
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calculateExportSpecs := import(":calculate-export-specs")
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