@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.3.0 → 2.3.1

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Files changed (21) hide show
  1. package/.turbo/turbo-build.log +2 -1
  2. package/.turbo/turbo-test.log +26 -10
  3. package/CHANGELOG.md +8 -0
  4. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  5. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  6. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  7. package/dist/tengo/tpl/main.plj.gz +0 -0
  8. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  10. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  11. package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
  12. package/dist/tengo/tpl/process.plj.gz +0 -0
  13. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  15. package/package.json +5 -5
  16. package/src/main.tpl.tengo +0 -5
  17. package/src/mixcr-analyze.tpl.tengo +0 -4
  18. package/src/mixcr-export.tpl.tengo +1 -1
  19. package/src/process-single-cell.tpl.tengo +1 -2
  20. package/src/process.tpl.tengo +0 -7
  21. package/src/test/columns-calculate.tpl.tengo +1 -1
package/.turbo/turbo-build.log CHANGED
@@ -1,5 +1,6 @@
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+  WARN  Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.3.0 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.3.1 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  info: Skipping unknown file type: test/columns.test.ts
package/.turbo/turbo-test.log CHANGED
@@ -1,20 +1,36 @@
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+  WARN  Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.3.0 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.3.1 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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  > vitest
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   RUN  v2.1.8 /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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- ✓ src/test/columns.test.ts (6 tests) 48797ms
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- ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 11601ms
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- ✓ checking preset for '10x-sc-xcr-vdj' 7631ms
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- ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 7583ms
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- ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 7661ms
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- ✓ checking preset for 'rna-seq' 6966ms
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- ✓ checking preset for 'generic-single-cell-gex' 7354ms
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+ stdout | src/test/columns.test.ts > checking preset for 'milab-human-dna-xcr-7genes-multiplex'
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+ {
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+ type: 'ok',
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+ value: undefined,
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+ stable: false,
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+ uTag: '6c11bfb3-e54c-4d9e-93d9-04ecc8a6e3c8',
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+ unstableMarker: 'field_not_resolved:exportSpecs'
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+ }
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+
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+ stdout | src/test/columns.test.ts > checking preset for 'milab-human-dna-xcr-7genes-multiplex'
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+ TEST FAILED SO ALTERNATIVE ROOT IS PRESETVED IN PL: test_1743445608218_96df81f8-dd85-4a6f-9cf9-a38dbe8ceb56 (NG:0x7e)
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+
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+ stdout | src/test/columns.test.ts > checking preset for 'milab-human-dna-xcr-7genes-multiplex'
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+ TEST FAILED SO ALTERNATIVE ROOT IS PRESETVED IN PL: test_1743445629470_e3d0e207-7f5d-412a-92dd-ea4d171cbb48 (NG:0x188)
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+
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+ ✓ src/test/columns.test.ts (6 tests) 64043ms
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+ ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 23412ms
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+ ✓ checking preset for '10x-sc-xcr-vdj' 8462ms
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+ ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 8304ms
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+ ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 8239ms
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+ ✓ checking preset for 'rna-seq' 7620ms
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+ ✓ checking preset for 'generic-single-cell-gex' 8004ms
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   Test Files  1 passed (1)
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   Tests  6 passed (6)
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-  Start at  08:07:13
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-  Duration  49.76s (transform 62ms, setup 0ms, collect 691ms, tests 48.80s, environment 0ms, prepare 72ms)
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+  Start at  18:26:47
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+  Duration  64.84s (transform 40ms, setup 0ms, collect 562ms, tests 64.04s, environment 0ms, prepare 66ms)
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package/CHANGELOG.md CHANGED
@@ -1,5 +1,13 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 2.3.1
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+
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+ ### Patch Changes
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+
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+ - e108f59: Dependency upgrade
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+ - Updated dependencies [e108f59]
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+ - @platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts@1.1.0
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+
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  ## 2.3.0
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  ### Minor Changes
package/dist/tengo/tpl/list-presets.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/main.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/prerun.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,16 +1,16 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "2.3.0",
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+ "version": "2.3.1",
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  "description": "Tengo-based template",
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  "dependencies": {
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- "@platforma-sdk/workflow-tengo": "^3.0.0",
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- "@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.0.2"
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+ "@platforma-sdk/workflow-tengo": "^3.1.0",
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+ "@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.1.0"
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  },
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  "devDependencies": {
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- "@platforma-sdk/tengo-builder": "^2.0.0",
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+ "@platforma-sdk/tengo-builder": "^2.0.2",
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  "@platforma-open/milaboratories.software-mixcr": "4.7.0-148-develop",
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  "@platforma-open/milaboratories.software-ptransform": "^1.3.1",
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- "@platforma-sdk/test": "^1.24.0",
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+ "@platforma-sdk/test": "^1.25.0",
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  "vitest": "^2.1.8",
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  "typescript": "~5.5.4"
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  },
package/src/main.tpl.tengo CHANGED
@@ -7,12 +7,7 @@ ll := import("@platforma-sdk/workflow-tengo:ll")
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  assets := import("@platforma-sdk/workflow-tengo:assets")
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  smart := import("@platforma-sdk/workflow-tengo:smart")
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  file := import("@platforma-sdk/workflow-tengo:file")
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- llPFrames := import("@platforma-sdk/workflow-tengo:pframes.ll")
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  pframes := import("@platforma-sdk/workflow-tengo:pframes")
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- exec := import("@platforma-sdk/workflow-tengo:exec")
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- self := import("@platforma-sdk/workflow-tengo:tpl")
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-
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- json := import("json")
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  calculatePresetInfoTpl := assets.importTemplate(":calculate-preset-info")
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  processTpl := assets.importTemplate(":process")
package/src/mixcr-analyze.tpl.tengo CHANGED
@@ -6,11 +6,7 @@ pConstants := import("@platforma-sdk/workflow-tengo:pframes.constants")
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  ll := import("@platforma-sdk/workflow-tengo:ll")
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  exec := import("@platforma-sdk/workflow-tengo:exec")
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  assets := import("@platforma-sdk/workflow-tengo:assets")
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- render := import("@platforma-sdk/workflow-tengo:render")
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- pframes := import("@platforma-sdk/workflow-tengo:pframes")
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  pcolumn := import("@platforma-sdk/workflow-tengo:pframes.pcolumn")
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- xsv := import("@platforma-sdk/workflow-tengo:pframes.xsv")
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- file := import("@platforma-sdk/workflow-tengo:file")
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  times := import("times")
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  json := import("json")
package/src/mixcr-export.tpl.tengo CHANGED
@@ -1,5 +1,5 @@
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  ll := import("@platforma-sdk/workflow-tengo:ll")
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- self := import("@platforma-sdk/workflow-tengo:tpl")
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+ self := import("@platforma-sdk/workflow-tengo:tpl.light")
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  pConstants := import("@platforma-sdk/workflow-tengo:pframes.constants")
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  smart := import("@platforma-sdk/workflow-tengo:smart")
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  assets := import("@platforma-sdk/workflow-tengo:assets")
package/src/process-single-cell.tpl.tengo CHANGED
@@ -1,7 +1,6 @@
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  ll := import("@platforma-sdk/workflow-tengo:ll")
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- self := import("@platforma-sdk/workflow-tengo:tpl")
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+ self := import("@platforma-sdk/workflow-tengo:tpl.light")
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  pConstants := import("@platforma-sdk/workflow-tengo:pframes.constants")
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- slices := import("@platforma-sdk/workflow-tengo:slices")
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  assets := import("@platforma-sdk/workflow-tengo:assets")
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  exec := import("@platforma-sdk/workflow-tengo:exec")
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package/src/process.tpl.tengo CHANGED
@@ -3,17 +3,10 @@
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  self := import("@platforma-sdk/workflow-tengo:tpl")
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  ll := import("@platforma-sdk/workflow-tengo:ll")
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- render := import("@platforma-sdk/workflow-tengo:render")
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  assets := import("@platforma-sdk/workflow-tengo:assets")
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  pframes := import("@platforma-sdk/workflow-tengo:pframes")
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- smart := import("@platforma-sdk/workflow-tengo:smart")
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  slices := import("@platforma-sdk/workflow-tengo:slices")
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  maps := import("@platforma-sdk/workflow-tengo:maps")
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- file := import("@platforma-sdk/workflow-tengo:file")
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- llPFrames := import("@platforma-sdk/workflow-tengo:pframes.ll")
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- pSpec := import("@platforma-sdk/workflow-tengo:pframes.spec")
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- pUtil := import("@platforma-sdk/workflow-tengo:pframes.util")
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- pConstants := import("@platforma-sdk/workflow-tengo:pframes.constants")
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  calculateExportSpecs := import(":calculate-export-specs")
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package/src/test/columns-calculate.tpl.tengo CHANGED
@@ -1,4 +1,4 @@
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- self := import("@platforma-sdk/workflow-tengo:tpl")
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+ self := import("@platforma-sdk/workflow-tengo:tpl.light")
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  ll := import("@platforma-sdk/workflow-tengo:ll")
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  calculateExportSpecs := import(":calculate-export-specs")