@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.20.6 → 2.20.8

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Files changed (17) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +14 -0
  3. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  4. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  5. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  6. package/dist/tengo/tpl/main.plj.gz +0 -0
  7. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  8. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  9. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  10. package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
  11. package/dist/tengo/tpl/process.plj.gz +0 -0
  12. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  13. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  14. package/package.json +3 -3
  15. package/src/calculate-preset-info.tpl.tengo +2 -2
  16. package/src/list-presets.tpl.tengo +1 -3
  17. package/src/mixcr-export.tpl.tengo +2 -2
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.20.6 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.20.8 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  info: Skipping unknown file type: test/columns.test.ts
package/CHANGELOG.md CHANGED
@@ -1,5 +1,19 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 2.20.8
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+
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+ ### Patch Changes
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+
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+ - 26b311c: - MiXCR upgrade
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+ - fix for file lock safeguard error
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+ - better memory management
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+
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+ ## 2.20.7
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+
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+ ### Patch Changes
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+
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+ - da51497: Fix for missing C gene and null clonotype key as a result
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+
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  ## 2.20.6
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  ### Patch Changes
package/dist/tengo/tpl/list-presets.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/main.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/prerun.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/process.plj.gz CHANGED
Binary file
package/package.json CHANGED
@@ -1,14 +1,14 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "2.20.6",
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+ "version": "2.20.8",
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  "description": "Tengo-based template",
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  "dependencies": {
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  "@platforma-sdk/workflow-tengo": "^4.8.0",
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- "@platforma-open/milaboratories.software-mixcr": "4.7.0-183-develop"
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+ "@platforma-open/milaboratories.software-mixcr": "4.7.0-190-develop"
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  },
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  "devDependencies": {
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  "@platforma-sdk/tengo-builder": "^2.1.10",
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- "@platforma-sdk/test": "^1.34.6",
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+ "@platforma-sdk/test": "^1.34.14",
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  "vitest": "~2.1.9",
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  "typescript": "~5.5.4"
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  },
package/src/calculate-preset-info.tpl.tengo CHANGED
@@ -25,7 +25,7 @@ self.body(func(inputs) {
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  mixcrExportPresetCmdBuilder := exec.builder().
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  inUiQueue().
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- mem("1GiB").
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+ mem("512MiB").
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  software(mixcrSw).
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  secret("MI_LICENSE", "MI_LICENSE").
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  printErrStreamToStdout().
@@ -56,7 +56,7 @@ self.body(func(inputs) {
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  mixcrForBackCmd := exec.builder().
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  inUiQueue().
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- mem("1GiB").
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+ mem("512MiB").
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  software(mixcrSw).
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  secret("MI_LICENSE", "MI_LICENSE").
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  printErrStreamToStdout().
package/src/list-presets.tpl.tengo CHANGED
@@ -12,11 +12,9 @@ self.defineOutputs("presets")
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  mixcrSw := assets.importSoftware("@platforma-open/milaboratories.software-mixcr:memory-from-limits")
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  self.body(func(inputs) {
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- // ll.print("__THE_LOG__ feats.computeLimits " + feats.computeLimits)
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- ll.print("__THE_LOG__ asdhjkajsdjasdjk")
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  listPresets := exec.builder().
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  inUiQueue().
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- mem("1GiB").
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+ mem("512MiB").
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  software(mixcrSw).
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  secret("MI_LICENSE", "MI_LICENSE").
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  arg("listPresetSpecificationsForUI").
package/src/mixcr-export.tpl.tengo CHANGED
@@ -32,8 +32,8 @@ self.body(func(inputs) {
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  hashKeyDerivationExpressionPt := func(sourceColumns) {
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  return pt.concatStr(
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- slices.map(sourceColumns, func(colName) { return pt.col(colName) }),
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- {delimiter: "#"}
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+ slices.map(sourceColumns, func(colName) { return pt.col(colName).fillNull("") }),
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+ { delimiter: "#" }
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  ).hash("sha256", "base64_alphanumeric", 120)
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  }
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