@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.2.0 → 2.2.2

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Files changed (16) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/.turbo/turbo-test.log +10 -10
  3. package/CHANGELOG.md +12 -0
  4. package/dist/tengo/lib/calculate-export-specs.lib.tengo +1 -1
  5. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  6. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  7. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  8. package/dist/tengo/tpl/main.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  10. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  11. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  12. package/dist/tengo/tpl/process.plj.gz +0 -0
  13. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  15. package/package.json +2 -2
  16. package/src/calculate-export-specs.lib.tengo +1 -1
package/.turbo/turbo-build.log CHANGED
@@ -1,5 +1,5 @@
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.2.0 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.2.2 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  Processing "src/aggregate-by-clonotype-key.tpl.tengo"...
package/.turbo/turbo-test.log CHANGED
@@ -1,20 +1,20 @@
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.2.0 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.2.2 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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  > vitest
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   RUN  v2.1.8 /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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- ✓ src/test/columns.test.ts (6 tests) 49261ms
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- ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 12586ms
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- ✓ checking preset for '10x-sc-xcr-vdj' 7814ms
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- ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 7347ms
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- ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 7319ms
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- ✓ checking preset for 'rna-seq' 6912ms
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- ✓ checking preset for 'generic-single-cell-gex' 7281ms
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+ ✓ src/test/columns.test.ts (6 tests) 46738ms
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+ ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 11338ms
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+ ✓ checking preset for '10x-sc-xcr-vdj' 7608ms
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+ ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 7124ms
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+ ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 7116ms
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+ ✓ checking preset for 'rna-seq' 6691ms
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+ ✓ checking preset for 'generic-single-cell-gex' 6860ms
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   Test Files  1 passed (1)
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   Tests  6 passed (6)
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-  Start at  08:44:46
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-  Duration  50.16s (transform 54ms, setup 0ms, collect 636ms, tests 49.26s, environment 0ms, prepare 69ms)
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+  Start at  11:23:07
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+  Duration  47.64s (transform 53ms, setup 0ms, collect 631ms, tests 46.74s, environment 0ms, prepare 85ms)
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package/CHANGELOG.md CHANGED
@@ -1,5 +1,17 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 2.2.2
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+
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+ ### Patch Changes
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+
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+ - eeed3eb: Allow N/A in topChain
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+
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+ ## 2.2.1
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+
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+ ### Patch Changes
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+
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+ - 40f2800: MiXCR upgrade, higher memory limit in export
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+
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  ## 2.2.0
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  ### Minor Changes
package/dist/tengo/lib/calculate-export-specs.lib.tengo CHANGED
@@ -445,7 +445,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  column: "topChains",
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  id: "top-chains",
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  naRegex: "",
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- allowNA: false,
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+ allowNA: true,
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  spec: {
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  valueType: "String",
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  name: "pl7.app/vdj/chain",
package/dist/tengo/tpl/list-presets.plj.gz CHANGED
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package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/prerun.plj.gz CHANGED
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package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "2.2.0",
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+ "version": "2.2.2",
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  "description": "Tengo-based template",
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  "dependencies": {
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  "@platforma-open/milaboratories.mixcr-clonotyping-2.sc-clonotype-builder": "1.0.1"
@@ -10,7 +10,7 @@
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  "@platforma-sdk/workflow-tengo": "^2.15.6",
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  "@milaboratories/software-pframes-conv": "2.1.16",
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  "@platforma-open/milaboratories.software-small-binaries": "^1.15.16",
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- "@platforma-open/milaboratories.software-mixcr": "4.7.0-147-develop",
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+ "@platforma-open/milaboratories.software-mixcr": "4.7.0-148-develop",
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  "@platforma-open/milaboratories.software-ptransform": "^1.3.1",
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  "@platforma-sdk/test": "^1.22.100",
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  "vitest": "^2.1.8",
package/src/calculate-export-specs.lib.tengo CHANGED
@@ -445,7 +445,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  column: "topChains",
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  id: "top-chains",
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  naRegex: "",
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- allowNA: false,
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+ allowNA: true,
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  spec: {
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  valueType: "String",
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  name: "pl7.app/vdj/chain",