@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.14.1 → 2.14.2

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Files changed (16) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/.turbo/turbo-test.log +10 -25
  3. package/CHANGELOG.md +6 -0
  4. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  5. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  6. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  7. package/dist/tengo/tpl/main.plj.gz +0 -0
  8. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  10. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  11. package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
  12. package/dist/tengo/tpl/process.plj.gz +0 -0
  13. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  15. package/package.json +3 -3
  16. package/src/mixcr-export.tpl.tengo +3 -1
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.14.1 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.14.2 build /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  info: Skipping unknown file type: test/columns.test.ts
package/.turbo/turbo-test.log CHANGED
@@ -1,36 +1,21 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping/mixcr-clonotyping/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.14.1 test /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.14.2 test /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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  > vitest
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   RUN  v2.1.8 /home/runner/work/mixcr-clonotyping/mixcr-clonotyping/workflow
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- stdout | src/test/columns.test.ts > checking preset for 'milab-human-dna-xcr-7genes-multiplex'
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- {
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- type: 'ok',
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- value: undefined,
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- stable: false,
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- uTag: 'fc1997c6-5b87-4c86-8aa6-0ea9d2014b38',
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- unstableMarker: 'field_not_resolved:exportSpecs'
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- }
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-
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- stdout | src/test/columns.test.ts > checking preset for 'milab-human-dna-xcr-7genes-multiplex'
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- TEST FAILED SO ALTERNATIVE ROOT IS PRESETVED IN PL: test_1745591248072_67adc363-cf48-41ba-82a1-fe7e00142ad8 (NG:0x82)
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-
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- stdout | src/test/columns.test.ts > checking preset for 'milab-human-dna-xcr-7genes-multiplex'
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- TEST FAILED SO ALTERNATIVE ROOT IS PRESETVED IN PL: test_1745591269056_11ea8a8b-adb0-49ca-b74e-a9b287bc1ae3 (NG:0x138)
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-
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- ✓ src/test/columns.test.ts (6 tests) 67551ms
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- ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 27568ms
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- ✓ checking preset for '10x-sc-xcr-vdj' 8418ms
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- ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 8182ms
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- ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 7939ms
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- ✓ checking preset for 'rna-seq' 7749ms
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- ✓ checking preset for 'generic-single-cell-gex' 7693ms
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+ ✓ src/test/columns.test.ts (6 tests) 53783ms
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+ ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 13009ms
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+ ✓ checking preset for '10x-sc-xcr-vdj' 8376ms
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+ ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 8245ms
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+ ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 8167ms
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+ ✓ checking preset for 'rna-seq' 7998ms
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+ ✓ checking preset for 'generic-single-cell-gex' 7987ms
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   Test Files  1 passed (1)
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   Tests  6 passed (6)
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-  Start at  14:27:27
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-  Duration  68.34s (transform 42ms, setup 0ms, collect 576ms, tests 67.55s, environment 0ms, prepare 60ms)
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+  Start at  08:20:54
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+  Duration  54.58s (transform 43ms, setup 0ms, collect 565ms, tests 53.78s, environment 0ms, prepare 59ms)
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package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 2.14.2
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+
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+ ### Patch Changes
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+
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+ - 7a78090: Drop logs in mixcr export to prevent CID conflicts in results deduplication
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+
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  ## 2.14.1
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  ### Patch Changes
package/dist/tengo/tpl/list-presets.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/prerun.plj.gz CHANGED
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package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,11 +1,11 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "2.14.1",
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+ "version": "2.14.2",
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  "description": "Tengo-based template",
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  "dependencies": {
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  "@platforma-sdk/workflow-tengo": "^4.1.2",
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- "@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.1.3",
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- "@platforma-open/milaboratories.mixcr-clonotyping-2.hash-column": "1.1.1"
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+ "@platforma-open/milaboratories.mixcr-clonotyping-2.hash-column": "1.1.1",
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+ "@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.1.3"
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  },
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  "devDependencies": {
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  "@platforma-sdk/tengo-builder": "^2.1.0",
package/src/mixcr-export.tpl.tengo CHANGED
@@ -32,6 +32,7 @@ self.body(func(inputs) {
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  mixcrCmdBuilder := exec.builder().
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  inMediumQueue().
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  printErrStreamToStdout().
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+ dontSaveStdoutOrStderr().
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  software(mixcrSw).
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  secret("MI_LICENSE", "MI_LICENSE").
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  arg("exportClones").
@@ -56,6 +57,7 @@ self.body(func(inputs) {
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  addFile("clones.clns", clnsFile).
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  arg("clones.tsv").
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  saveFile("clones.tsv").
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+ cacheHours(3).
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  run()
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  }
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@@ -75,7 +77,7 @@ self.body(func(inputs) {
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  if is_undefined(clonotypeKeyColumns) {
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  result.tsv = unprocessedTsv
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-
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+
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  } else if is_undefined(cellTagColumns) {
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  hashCmdBuilder := exec.builder().
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  printErrStreamToStdout().