@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.12.0 → 2.13.0

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Files changed (17) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/.turbo/turbo-test.log +10 -10
  3. package/CHANGELOG.md +6 -0
  4. package/dist/tengo/lib/calculate-export-specs.lib.tengo +1 -1
  5. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  6. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  7. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  8. package/dist/tengo/tpl/main.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  10. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  11. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  12. package/dist/tengo/tpl/process-single-cell.plj.gz +0 -0
  13. package/dist/tengo/tpl/process.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  15. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  16. package/package.json +4 -4
  17. package/src/calculate-export-specs.lib.tengo +1 -1
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.12.0 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.13.0 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  info: Skipping unknown file type: test/columns.test.ts
package/.turbo/turbo-test.log CHANGED
@@ -1,21 +1,21 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.12.0 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.13.0 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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  > vitest
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   RUN  v2.1.8 /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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- ✓ src/test/columns.test.ts (6 tests) 54404ms
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- ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 12330ms
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- ✓ checking preset for '10x-sc-xcr-vdj' 8645ms
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- ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 8791ms
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- ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 8369ms
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- ✓ checking preset for 'rna-seq' 7949ms
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- ✓ checking preset for 'generic-single-cell-gex' 8319ms
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+ ✓ src/test/columns.test.ts (6 tests) 53338ms
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+ ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 13323ms
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+ ✓ checking preset for '10x-sc-xcr-vdj' 8239ms
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+ ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 8196ms
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+ ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 8030ms
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+ ✓ checking preset for 'rna-seq' 7570ms
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+ ✓ checking preset for 'generic-single-cell-gex' 7979ms
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   Test Files  1 passed (1)
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   Tests  6 passed (6)
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-  Start at  10:21:30
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-  Duration  55.25s (transform 47ms, setup 0ms, collect 610ms, tests 54.40s, environment 0ms, prepare 67ms)
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+  Start at  16:55:46
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+  Duration  54.14s (transform 43ms, setup 0ms, collect 576ms, tests 53.34s, environment 0ms, prepare 59ms)
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package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 2.13.0
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+
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+ ### Minor Changes
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+
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+ - b1f6427: species added, visibility of chain columns set to optional, mixcr updated to 4.7.0-164-develop
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+
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  ## 2.12.0
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  ### Minor Changes
package/dist/tengo/lib/calculate-export-specs.lib.tengo CHANGED
@@ -568,7 +568,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  spec: {
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  valueType: "String",
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  name: "pl7.app/vdj/chain",
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- annotations: a(orderP, true, {
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+ annotations: a(orderP, false, {
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  "pl7.app/label": "Chain",
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  "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/discreteValues": "['TRA','TRB','TRG','TRD','IGH','IGK','IGL']"
package/dist/tengo/tpl/list-presets.plj.gz CHANGED
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package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/prerun.plj.gz CHANGED
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package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,15 +1,15 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "2.12.0",
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+ "version": "2.13.0",
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  "description": "Tengo-based template",
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  "dependencies": {
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  "@platforma-sdk/workflow-tengo": "^4.1.2",
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- "@platforma-open/milaboratories.mixcr-clonotyping-2.hash-column": "1.1.1",
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- "@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.1.3"
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+ "@platforma-open/milaboratories.mixcr-clonotyping-2.single-cell-scripts": "1.1.3",
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+ "@platforma-open/milaboratories.mixcr-clonotyping-2.hash-column": "1.1.1"
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  },
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  "devDependencies": {
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  "@platforma-sdk/tengo-builder": "^2.1.0",
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- "@platforma-open/milaboratories.software-mixcr": "4.7.0-150-develop",
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+ "@platforma-open/milaboratories.software-mixcr": "4.7.0-164-develop",
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  "@platforma-open/milaboratories.software-ptransform": "^1.3.1",
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  "@platforma-sdk/test": "^1.29.17",
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  "vitest": "~2.1.8",
package/src/calculate-export-specs.lib.tengo CHANGED
@@ -568,7 +568,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  spec: {
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  valueType: "String",
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  name: "pl7.app/vdj/chain",
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- annotations: a(orderP, true, {
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+ annotations: a(orderP, false, {
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  "pl7.app/label": "Chain",
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  "pl7.app/isDiscreteFilter": "true",
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  "pl7.app/discreteValues": "['TRA','TRB','TRG','TRD','IGH','IGK','IGL']"