@platforma-open/milaboratories.mixcr-clonotyping-2.workflow 2.1.1 → 2.2.0

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Files changed (17) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/.turbo/turbo-test.log +10 -10
  3. package/CHANGELOG.md +6 -0
  4. package/dist/tengo/lib/calculate-export-specs.lib.tengo +4 -4
  5. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  6. package/dist/tengo/tpl/calculate-preset-info.plj.gz +0 -0
  7. package/dist/tengo/tpl/list-presets.plj.gz +0 -0
  8. package/dist/tengo/tpl/main.plj.gz +0 -0
  9. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  10. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  11. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  12. package/dist/tengo/tpl/process.plj.gz +0 -0
  13. package/dist/tengo/tpl/test.columns-calculate.plj.gz +0 -0
  14. package/dist/tengo/tpl/test.columns.test.plj.gz +0 -0
  15. package/package.json +1 -1
  16. package/src/calculate-export-specs.lib.tengo +4 -4
  17. package/src/process.tpl.tengo +5 -5
package/.turbo/turbo-build.log CHANGED
@@ -1,5 +1,5 @@
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.1.1 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.2.0 build /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  Processing "src/aggregate-by-clonotype-key.tpl.tengo"...
package/.turbo/turbo-test.log CHANGED
@@ -1,20 +1,20 @@
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- > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.1.1 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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+ > @platforma-open/milaboratories.mixcr-clonotyping-2.workflow@2.2.0 test /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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  > vitest
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   RUN  v2.1.8 /home/runner/work/mixcr-clonotyping-2/mixcr-clonotyping-2/workflow
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- ✓ src/test/columns.test.ts (6 tests) 49169ms
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- ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 13728ms
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- ✓ checking preset for '10x-sc-xcr-vdj' 7394ms
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- ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 7337ms
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- ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 7115ms
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- ✓ checking preset for 'rna-seq' 6700ms
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- ✓ checking preset for 'generic-single-cell-gex' 6894ms
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+ ✓ src/test/columns.test.ts (6 tests) 49261ms
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+ ✓ checking preset for 'milab-human-dna-xcr-7genes-multiplex' 12586ms
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+ ✓ checking preset for '10x-sc-xcr-vdj' 7814ms
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+ ✓ checking preset for 'cellecta-human-rna-xcr-umi-drivermap-…' 7347ms
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+ ✓ checking preset for 'takara-human-rna-bcr-umi-smartseq' 7319ms
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+ ✓ checking preset for 'rna-seq' 6912ms
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+ ✓ checking preset for 'generic-single-cell-gex' 7281ms
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   Test Files  1 passed (1)
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   Tests  6 passed (6)
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-  Start at  18:50:45
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-  Duration  49.93s (transform 43ms, setup 0ms, collect 537ms, tests 49.17s, environment 0ms, prepare 56ms)
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+  Start at  08:44:46
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+  Duration  50.16s (transform 54ms, setup 0ms, collect 636ms, tests 49.26s, environment 0ms, prepare 69ms)
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package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-clonotyping.workflow
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+ ## 2.2.0
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+
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+ ### Minor Changes
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+
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+ - 4b82d2d: Source domain for output columns changed from pl7.app/blockId to pl7.app/vdj/clonotypingRunId
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+
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  ## 2.1.1
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  ### Patch Changes
package/dist/tengo/lib/calculate-export-specs.lib.tengo CHANGED
@@ -472,7 +472,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  }
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  columnsSpecPerSample = addSpec(columnsSpecPerSample, { spec: { domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  } } })
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@@ -482,10 +482,10 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  columnsSpecPerClonotype = addSpec(columnsSpecPerClonotype, { spec: {
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  domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  },
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  annotations: {
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- "pl7.app/segmentedBy": string(json.encode(["pl7.app/blockId"]))
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+ "pl7.app/segmentedBy": string(json.encode(["pl7.app/vdj/clonotypingRunId"]))
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  }
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  } })
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@@ -567,7 +567,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  type: "String",
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  domain: {
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  "pl7.app/vdj/cellTagId": tag,
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  },
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  annotations: a(orderP, true, {
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  "pl7.app/label": label
package/dist/tengo/tpl/list-presets.plj.gz CHANGED
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package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/prerun.plj.gz CHANGED
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package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-clonotyping-2.workflow",
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- "version": "2.1.1",
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+ "version": "2.2.0",
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  "description": "Tengo-based template",
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  "dependencies": {
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  "@platforma-open/milaboratories.mixcr-clonotyping-2.sc-clonotype-builder": "1.0.1"
package/src/calculate-export-specs.lib.tengo CHANGED
@@ -472,7 +472,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  }
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  columnsSpecPerSample = addSpec(columnsSpecPerSample, { spec: { domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  } } })
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  // "pl7.app/segmentedBy" annotation indicates columns that can be meaningfully merged across
@@ -482,10 +482,10 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  columnsSpecPerClonotype = addSpec(columnsSpecPerClonotype, { spec: {
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  domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  },
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  annotations: {
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- "pl7.app/segmentedBy": string(json.encode(["pl7.app/blockId"]))
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+ "pl7.app/segmentedBy": string(json.encode(["pl7.app/vdj/clonotypingRunId"]))
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  }
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  } })
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@@ -567,7 +567,7 @@ calculateExportSpecs := func(presetSpecForBack, blockId) {
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  type: "String",
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  domain: {
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  "pl7.app/vdj/cellTagId": tag,
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  },
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  annotations: a(orderP, true, {
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  "pl7.app/label": label
package/src/process.tpl.tengo CHANGED
@@ -132,7 +132,7 @@ self.body(func(inputs) {
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  valueType: "File",
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  name: "mixcr.com/qc",
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  domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  }
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  },
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  name: "qc"
@@ -142,7 +142,7 @@ self.body(func(inputs) {
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  kind: "PColumn",
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  name: "pl7.app/log",
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  domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  },
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  valueType: "Log"
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  },
@@ -153,7 +153,7 @@ self.body(func(inputs) {
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  kind: "PColumn",
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  name: "mixcr.com/clns",
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  domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  },
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  annotations: clnsAnnotations,
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  valueType: "File"
@@ -166,7 +166,7 @@ self.body(func(inputs) {
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  kind: "PColumn",
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  name: "mixcr.com/report",
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  domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  },
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  valueType: "File",
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  axesSpec: [ {
@@ -266,7 +266,7 @@ self.body(func(inputs) {
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  kind: "PColumn",
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  name: "mixcr.com/clonotypeTable",
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  domain: {
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- "pl7.app/blockId": blockId
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+ "pl7.app/vdj/clonotypingRunId": blockId
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  },
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  valueType: "File"
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  },