@platforma-open/milaboratories.mixcr-amplicon-alignment.workflow 1.21.9 → 1.21.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.turbo/turbo-build.log +1 -1
- package/CHANGELOG.md +12 -0
- package/dist/tengo/lib/calculate-export-specs.lib.tengo +1 -1
- package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
- package/dist/tengo/tpl/export-report.plj.gz +0 -0
- package/dist/tengo/tpl/main.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
- package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
- package/dist/tengo/tpl/prerun.plj.gz +0 -0
- package/dist/tengo/tpl/process.plj.gz +0 -0
- package/dist/tengo/tpl/repseqio-library.plj.gz +0 -0
- package/package.json +1 -1
- package/src/calculate-export-specs.lib.tengo +1 -1
- package/src/main.tpl.tengo +1 -0
- package/src/mixcr-analyze.tpl.tengo +6 -0
- package/src/process.tpl.tengo +1 -0
package/.turbo/turbo-build.log
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@@ -1,6 +1,6 @@
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WARN Issue while reading "/home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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> @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow@1.21.
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> @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow@1.21.11 build /home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/workflow
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> rm -rf dist && pl-tengo check && pl-tengo build
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Processing "src/aggregate-by-clonotype-key.tpl.tengo"...
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package/CHANGELOG.md
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# @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow
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## 1.21.11
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### Patch Changes
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- a44cc33: Add an option to disable low-quality read mapping
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## 1.21.10
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### Patch Changes
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- d26daa1: Make axis label visible by default
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## 1.21.9
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### Patch Changes
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package/package.json
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package/src/main.tpl.tengo
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@@ -144,6 +144,7 @@ wf.body(func(args) {
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assemblingFeature: args.assemblingFeature,
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imputeGermline: args.imputeGermline,
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badQualityThreshold: args.badQualityThreshold,
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disableLowQualityMapping: args.disableLowQualityMapping,
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isLibraryFileGzipped: isLibraryFileGzipped,
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stopCodonTypes: args.stopCodonTypes,
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stopCodonReplacements: args.stopCodonReplacements
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mixcrCmdBuilder.arg("-Massemble.cloneAssemblerParameters.minimalQuality=" + string(int(badQualityThreshold)))
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}
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// Disable the deferred-reads mapping phase
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disableLowQualityMapping := params.disableLowQualityMapping
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if !is_undefined(disableLowQualityMapping) && disableLowQualityMapping {
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mixcrCmdBuilder.arg("-Massemble.cloneAssemblerParameters.maxBadPointsPercent=0")
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}
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// if (!is_undefined(threePrimePrimer)) {
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// mixcrCmdBuilder.arg("--floating-left-alignment-boundary")
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// } else {
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package/src/process.tpl.tengo
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assemblingFeature: params.assemblingFeature,
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imputeGermline: params.imputeGermline,
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badQualityThreshold: params.badQualityThreshold,
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disableLowQualityMapping: params.disableLowQualityMapping,
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isLibraryFileGzipped: params.isLibraryFileGzipped
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}, { removeUndefs: true }),
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limitInput: limitInput
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