@platforma-open/milaboratories.mixcr-amplicon-alignment.workflow 1.21.3 → 1.21.5

package/.turbo/turbo-build.log

@@ -1,6 +1,6 @@
  WARN  Issue while reading "/home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow@1.21.3 build /home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/workflow
+> @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow@1.21.5 build /home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/workflow
 > rm -rf dist && pl-tengo check && pl-tengo build
 
 Processing "src/aggregate-by-clonotype-key.tpl.tengo"...

package/CHANGELOG.md

@@ -1,5 +1,17 @@
 # @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow
 
+## 1.21.5
+
+### Patch Changes
+
+- 4a61ea6: update limits
+
+## 1.21.4
+
+### Patch Changes
+
+- b93d463: fix memory for export
+
 ## 1.21.3
 
 ### Patch Changes

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.mixcr-amplicon-alignment.workflow",
-  "version": "1.21.3",
+  "version": "1.21.5",
   "description": "MiXCR Amplicon Alignment Workflow",
   "type": "module",
   "dependencies": {

package/src/export-report.tpl.tengo

@@ -24,7 +24,7 @@ ptablerSw := assets.importSoftware("@platforma-open/milaboratories.software-ptab
 
 self.body(func(inputs) {
     clnsData := inputs.clnsData
-	params := inputs.params
+	perProcessMemGB := inputs.perProcessMemGB
     presetSpecForBack := inputs.presetSpecForBack
     sampleIdAxisSpec := inputs.sampleIdAxisSpec
     chains := inputs.chains
@@ -200,8 +200,8 @@ self.body(func(inputs) {
 
     // Memory for downstream operations, linked to user override with hardcoded floors
 	baseMemGB := 64
-	if !is_undefined(params.perProcessMemGB) {
-		baseMemGB = params.perProcessMemGB
+	if !is_undefined(perProcessMemGB) {
+		baseMemGB = perProcessMemGB
 	}
 	memGB := func(floorGB, divisor) {
 		return string(int(math.max(floorGB, baseMemGB / divisor))) + "GB"
@@ -214,7 +214,7 @@ self.body(func(inputs) {
 		sampleId := json.decode(key)[0]
 		exportFiltersCmd := exec.builder().
 			inMediumQueue().
-			mem(memGB(16, 3)).
+			mem(memGB(16, 2)).
 			cpu(2).
 			software(mixcrSw).
 			env("MI_USE_SYSTEM_CA", "true").

package/src/mixcr-export.tpl.tengo

@@ -196,7 +196,7 @@ self.body(func(inputs) {
 	createExport := func(additionalAction) {
 		mixcrCmdBuilder := exec.builder().
 			inMediumQueue().
-			mem(memGB(16, 3)).
+			mem(memGB(16, 2)).
 		    cpu(2).
 			printErrStreamToStdout().
 			software(mixcrSw).

package/src/process.tpl.tengo

@@ -357,6 +357,7 @@ self.body(func(inputs) {
 		clonotypeTablesData: clonotypeTablesData,
 		hasUmi: hasUMI,
 		umiTags: umiTags,
+		perProcessMemGB: perProcessMemGB,
 		productiveFeature: productiveFeature,
 		stopCodonTypes: params.stopCodonTypes,
 		stopCodonReplacements: params.stopCodonReplacements