@platforma-open/milaboratories.mixcr-amplicon-alignment.workflow 1.21.3 → 1.21.4

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Files changed (13) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +6 -0
  3. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  4. package/dist/tengo/tpl/export-report.plj.gz +0 -0
  5. package/dist/tengo/tpl/main.plj.gz +0 -0
  6. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  7. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  8. package/dist/tengo/tpl/prerun.plj.gz +0 -0
  9. package/dist/tengo/tpl/process.plj.gz +0 -0
  10. package/dist/tengo/tpl/repseqio-library.plj.gz +0 -0
  11. package/package.json +1 -1
  12. package/src/export-report.tpl.tengo +3 -3
  13. package/src/process.tpl.tengo +1 -0
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow@1.21.3 build /home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/workflow
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+ > @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow@1.21.4 build /home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  Processing "src/aggregate-by-clonotype-key.tpl.tengo"...
package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow
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+ ## 1.21.4
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+
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+ ### Patch Changes
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+
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+ - b93d463: fix memory for export
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+
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  ## 1.21.3
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  ### Patch Changes
package/dist/tengo/tpl/export-report.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/prerun.plj.gz CHANGED
Binary file
package/dist/tengo/tpl/process.plj.gz CHANGED
Binary file
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-amplicon-alignment.workflow",
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- "version": "1.21.3",
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+ "version": "1.21.4",
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  "description": "MiXCR Amplicon Alignment Workflow",
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  "type": "module",
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  "dependencies": {
package/src/export-report.tpl.tengo CHANGED
@@ -24,7 +24,7 @@ ptablerSw := assets.importSoftware("@platforma-open/milaboratories.software-ptab
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  self.body(func(inputs) {
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  clnsData := inputs.clnsData
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- params := inputs.params
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+ perProcessMemGB := inputs.perProcessMemGB
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  presetSpecForBack := inputs.presetSpecForBack
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  sampleIdAxisSpec := inputs.sampleIdAxisSpec
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  chains := inputs.chains
@@ -200,8 +200,8 @@ self.body(func(inputs) {
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  // Memory for downstream operations, linked to user override with hardcoded floors
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  baseMemGB := 64
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- if !is_undefined(params.perProcessMemGB) {
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- baseMemGB = params.perProcessMemGB
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+ if !is_undefined(perProcessMemGB) {
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+ baseMemGB = perProcessMemGB
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  }
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  memGB := func(floorGB, divisor) {
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  return string(int(math.max(floorGB, baseMemGB / divisor))) + "GB"
package/src/process.tpl.tengo CHANGED
@@ -357,6 +357,7 @@ self.body(func(inputs) {
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  clonotypeTablesData: clonotypeTablesData,
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  hasUmi: hasUMI,
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  umiTags: umiTags,
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+ perProcessMemGB: perProcessMemGB,
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  productiveFeature: productiveFeature,
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  stopCodonTypes: params.stopCodonTypes,
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  stopCodonReplacements: params.stopCodonReplacements