@platforma-open/milaboratories.mixcr-amplicon-alignment.workflow 1.18.0 → 1.18.1

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Files changed (13) hide show
  1. package/.turbo/turbo-build.log +1 -1
  2. package/CHANGELOG.md +6 -0
  3. package/dist/tengo/tpl/aggregate-by-clonotype-key.plj.gz +0 -0
  4. package/dist/tengo/tpl/export-report.plj.gz +0 -0
  5. package/dist/tengo/tpl/main.plj.gz +0 -0
  6. package/dist/tengo/tpl/mixcr-analyze.plj.gz +0 -0
  7. package/dist/tengo/tpl/mixcr-export.plj.gz +0 -0
  8. package/dist/tengo/tpl/process.plj.gz +0 -0
  9. package/dist/tengo/tpl/repseqio-library.plj.gz +0 -0
  10. package/package.json +4 -4
  11. package/src/export-report.tpl.tengo +2 -0
  12. package/src/mixcr-analyze.tpl.tengo +3 -1
  13. package/src/mixcr-export.tpl.tengo +1 -0
package/.turbo/turbo-build.log CHANGED
@@ -1,6 +1,6 @@
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   WARN  Issue while reading "/home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
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- > @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow@1.18.0 build /home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/workflow
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+ > @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow@1.18.1 build /home/runner/work/mixcr-amplicon-alignment/mixcr-amplicon-alignment/workflow
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  > rm -rf dist && pl-tengo check && pl-tengo build
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  Processing "src/aggregate-by-clonotype-key.tpl.tengo"...
package/CHANGELOG.md CHANGED
@@ -1,5 +1,11 @@
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  # @platforma-open/milaboratories.mixcr-amplicon-alignment.workflow
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+ ## 1.18.1
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+
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+ ### Patch Changes
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+
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+ - 5198666: Upgrade MiXCR to 4.7.0-300-develop, add MI_LICENSE_DEBUG env, use --use-local-temp, show loading spinner while sample list loads
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+
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  ## 1.18.0
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  ### Minor Changes
package/dist/tengo/tpl/export-report.plj.gz CHANGED
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package/dist/tengo/tpl/main.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-analyze.plj.gz CHANGED
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package/dist/tengo/tpl/mixcr-export.plj.gz CHANGED
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package/dist/tengo/tpl/process.plj.gz CHANGED
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package/package.json CHANGED
@@ -1,16 +1,16 @@
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  {
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  "name": "@platforma-open/milaboratories.mixcr-amplicon-alignment.workflow",
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- "version": "1.18.0",
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+ "version": "1.18.1",
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  "description": "MiXCR Amplicon Alignment Workflow",
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  "type": "module",
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  "dependencies": {
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- "@platforma-sdk/workflow-tengo": "5.8.1",
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- "@platforma-open/milaboratories.software-mixcr": "4.7.0-279-develop",
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+ "@platforma-sdk/workflow-tengo": "5.8.2",
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+ "@platforma-open/milaboratories.software-mixcr": "4.7.0-300-develop",
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  "@platforma-open/milaboratories.software-repseqio": "^2.5.0-13-master",
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  "@platforma-open/milaboratories.mixcr-amplicon-alignment.software": "1.1.0"
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  },
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  "devDependencies": {
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- "@platforma-sdk/tengo-builder": "2.4.12"
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+ "@platforma-sdk/tengo-builder": "2.4.17"
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  },
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  "scripts": {
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  "build": "rm -rf dist && pl-tengo check && pl-tengo build",
package/src/export-report.tpl.tengo CHANGED
@@ -125,6 +125,7 @@ self.body(func(inputs) {
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  software(mixcrSw).
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  env("MI_USE_SYSTEM_CA", "true").
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  arg("exportReportsTable")
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  // Add all clns files as input
@@ -205,6 +206,7 @@ self.body(func(inputs) {
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  software(mixcrSw).
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  env("MI_USE_SYSTEM_CA", "true").
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  arg("exportClones").
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  arg("--dont-split-files").
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  arg("--drop-default-fields").
package/src/mixcr-analyze.tpl.tengo CHANGED
@@ -58,7 +58,9 @@ self.body(func(inputs) {
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  env("MI_PROGRESS_PREFIX", progressPrefix).
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  software(mixcrSw).
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  secret("MI_LICENSE", "MI_LICENSE").
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- arg("analyze")
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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+ arg("analyze").
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+ arg("--use-local-temp")
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  // Select preset based on UMI presence
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  if !is_undefined(params.hasUMI) && params.hasUMI {
package/src/mixcr-export.tpl.tengo CHANGED
@@ -191,6 +191,7 @@ self.body(func(inputs) {
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  printErrStreamToStdout().
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  software(mixcrSw).
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  secret("MI_LICENSE", "MI_LICENSE").
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+ env("MI_LICENSE_DEBUG", "MI_LICENSE_DEBUG").
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  arg("exportClones").
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  arg("--dont-split-files").
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  arg("--drop-default-fields").