@platforma-open/milaboratories.import-vdj 1.7.0 → 1.8.0

package/dist/index.js

@@ -12795,6 +12795,8 @@ function bareSetValid(bare) {
 }
 //#endregion
 //#region ../model/dist/index.js
+/** Unpartitioned inline-JSON p-column storage; payload is `{ keyLength, data }`. */
+const RT_JSON = "PColumnData/Json";
 /**
 * The mapping fields that belong to the dataset door and mean nothing on a bare set: the bare
 * path in the workflow reads `bareSet`, `fileSource` and `datasetRef` and nothing else.
@@ -13090,13 +13092,37 @@ const platforma$1 = BlockModelV3.create(blockDataModel).args(projectArgs).prerun
 }).outputWithStatus("stats", (ctx) => {
 	const pCols = ctx.outputs?.resolve("stats")?.getPColumns();
 	if (pCols === void 0) return;
-	const primary = pCols.find((c) => c.spec.name.endsWith("/annotatedCount"));
+	const primary = pCols.find((c) => c.spec.name.endsWith("/annotatedCount")) ?? pCols.find((c) => c.spec.name === "pl7.app/vdj/stat/clonotypeCount");
 	if (primary === void 0) return;
 	return createPlDataTableV3(ctx, {
 		primaryColumns: [DataColumn.fromColumn(primary)],
 		columns: pCols.filter((c) => c.id !== primary.id).map((c) => DataColumn.fromColumn(c)),
 		tableState: ctx.data.tableState
 	});
+}).output("emptyChainSamples", (ctx) => {
+	const pCols = ctx.outputs?.resolve("stats")?.getPColumns();
+	if (pCols === void 0) return;
+	const countCols = pCols.filter((c) => c.spec.name === "pl7.app/vdj/stat/clonotypeCount");
+	const [firstCol] = countCols;
+	if (firstCol === void 0) return;
+	const totals = /* @__PURE__ */ new Map();
+	for (const col of countCols) {
+		const data = col.data;
+		if (!(data instanceof TreeNodeAccessor) || data.resourceType.name !== RT_JSON) return;
+		const json = data.getDataAsJsonOrUndefined();
+		if (json === void 0) return;
+		for (const [keyStr, value] of Object.entries(json.data)) {
+			const [sampleId] = JSON.parse(keyStr);
+			if (sampleId === void 0) continue;
+			const count = typeof value === "number" ? value : 0;
+			totals.set(sampleId, (totals.get(sampleId) ?? 0) + count);
+		}
+	}
+	const labels = ctx.resultPool.findLabelsForColumnAxis(firstCol.spec, 0);
+	return {
+		emptySamples: [...totals.entries()].filter(([, total]) => total === 0).map(([sampleId]) => labels?.[sampleId] ?? String(sampleId)).sort((a, b) => a.localeCompare(b)),
+		sampleCount: totals.size
+	};
 }).sections((_ctx) => [{
 	type: "link",
 	href: "/",