@platforma-open/milaboratories.immune-assay-data.workflow 1.5.0 → 1.6.0

package/.turbo/turbo-build.log

@@ -1,6 +1,6 @@
  WARN  Issue while reading "/home/runner/work/immune-assay-data/immune-assay-data/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.immune-assay-data.workflow@1.5.0 build /home/runner/work/immune-assay-data/immune-assay-data/workflow
+> @platforma-open/milaboratories.immune-assay-data.workflow@1.6.0 build /home/runner/work/immune-assay-data/immune-assay-data/workflow
 > rm -rf dist && pl-tengo check && pl-tengo build
 
 Processing "src/build-outputs.tpl.tengo"...

package/CHANGELOG.md

@@ -1,5 +1,22 @@
 # @platforma-open/milaboratories.immune-assay-data.workflow
 
+## 1.6.0
+
+### Minor Changes
+
+- a47580b: Support custom block title
+
+## 1.5.1
+
+### Patch Changes
+
+- 35cde6e: Show running state for tables and graphs
+- Updated dependencies [35cde6e]
+  - @platforma-open/milaboratories.immune-assay-data.coverage-mode-calc@1.1.3
+  - @platforma-open/milaboratories.immune-assay-data.prepare-fasta@1.1.3
+  - @platforma-open/milaboratories.immune-assay-data.add-header@1.1.3
+  - @platforma-open/milaboratories.immune-assay-data.fasta-to-tsv@1.1.3
+
 ## 1.5.0
 
 ### Minor Changes

package/package.json

@@ -1,24 +1,22 @@
 {
   "name": "@platforma-open/milaboratories.immune-assay-data.workflow",
-  "version": "1.5.0",
+  "version": "1.6.0",
   "type": "module",
-  "description": "Block Workflow",
+  "description": "Tengo-based template",
   "dependencies": {
-    "@platforma-sdk/workflow-tengo": "^5.6.3",
+    "@platforma-sdk/workflow-tengo": "5.8.0",
     "@platforma-open/soedinglab.software-mmseqs2": "^1.17.2",
-    "@platforma-open/milaboratories.immune-assay-data.prepare-fasta": "1.1.2",
-    "@platforma-open/milaboratories.immune-assay-data.add-header": "1.1.2",
-    "@platforma-open/milaboratories.immune-assay-data.coverage-mode-calc": "1.1.2",
-    "@platforma-open/milaboratories.immune-assay-data.fasta-to-tsv": "1.1.2"
+    "@platforma-open/milaboratories.immune-assay-data.add-header": "1.1.3",
+    "@platforma-open/milaboratories.immune-assay-data.fasta-to-tsv": "1.1.3",
+    "@platforma-open/milaboratories.immune-assay-data.coverage-mode-calc": "1.1.3",
+    "@platforma-open/milaboratories.immune-assay-data.prepare-fasta": "1.1.3"
   },
   "devDependencies": {
-    "@platforma-sdk/tengo-builder": "^2.3.13",
-    "@platforma-sdk/test": "^1.46.0",
-    "vitest": "^2.1.8"
+    "@platforma-sdk/tengo-builder": "2.4.8"
   },
   "scripts": {
     "build": "rm -rf dist && pl-tengo check && pl-tengo build",
-    "test": "vitest",
-    "format": "/usr/bin/env emacs --script ./format.el"
+    "format": "/usr/bin/env emacs --script ./format.el",
+    "do-pack": "rm -f *.tgz && pnpm pack && mv *.tgz package.tgz"
   }
 }

package/src/build-outputs.tpl.tengo

@@ -206,7 +206,9 @@ self.body(func(inputs) {
 	coverageStr := string(inputs.settings.coverageThreshold)
 	similarityTypeStr := inputs.settings.similarityType == "sequence-identity" ? "Exact Match" : "BLOSUM"
 	
-	traceLabel := "Assay Data (sim:" + similarityTypeStr + ", ident:" + identityStr + ", cov:" + coverageStr + ")"
+	// Use block label if provided, otherwise fall back to default technical label
+	blockLabel := inputs.customBlockLabel || inputs.defaultBlockLabel || ""
+	traceLabel := blockLabel != "" ? blockLabel : "Assay Data (sim:" + similarityTypeStr + ", ident:" + identityStr + ", cov:" + coverageStr + ")"
 	
 	trace := pSpec.makeTrace(inputs.datasetSpec,
 		{

package/src/main.tpl.tengo

@@ -377,7 +377,9 @@ wf.body(func(args) {
 			assayDataTsv: ptw.getFile("assayData.tsv"),
 			clonesDataTsv: ptw.getFile("clonesData.tsv"),
 			uniqueValuesMap: uniqueValuesMap,
-			settings: args.settings
+			settings: args.settings,
+			customBlockLabel: args.customBlockLabel,
+			defaultBlockLabel: args.defaultBlockLabel
 		})
 		assayPframe = buildOutputsResult.output("assayPframe")
 		epf = buildOutputsResult.output("epf")

package/index.d.ts

@@ -1,4 +0,0 @@
-declare type TemplateFromFile = { readonly type: "from-file"; readonly path: string; };
-declare type TplName = "main";
-declare const Templates: Record<TplName, TemplateFromFile>;
-export { Templates };

package/index.js

@@ -1,3 +0,0 @@
-module.exports = { Templates: {
-  'main': { type: 'from-file', path: require.resolve('./dist/tengo/tpl/main.plj.gz') }
-}}

package/tsconfig.json

@@ -1,16 +0,0 @@
-{
-  "compilerOptions": {
-    "target": "es2022",
-    "module": "commonjs",
-    "moduleResolution": "node",
-    "esModuleInterop": true,
-    "strict": true,
-    "outDir": "./dist",
-    "rootDir": "./src",
-    "sourceMap": true,
-    "declaration": true
-  },
-  "types": [],
-  "include": ["src/**/*"],
-  "exclude": ["node_modules", "dist"]
-}

package/vitest.config.mts

@@ -1,9 +0,0 @@
-import { defineConfig } from 'vitest/config';
-
-export default defineConfig({
-  test: {
-    watch: false,
-    maxConcurrency: 3,
-    testTimeout: 5000
-  }
-});