@platforma-open/milaboratories.immune-assay-data.model 1.5.2 → 1.5.4

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.immune-assay-data.model",
-  "version": "1.5.2",
+  "version": "1.5.4",
   "description": "Block model",
   "type": "module",
   "main": "./dist/index.js",
@@ -15,13 +15,13 @@
     "./dist/model.json": "./dist/model.json"
   },
   "dependencies": {
-    "@platforma-sdk/model": "1.53.2",
-    "@milaboratories/graph-maker": "1.1.216"
+    "@platforma-sdk/model": "1.58.3",
+    "@milaboratories/graph-maker": "1.2.0"
   },
   "devDependencies": {
-    "@milaboratories/ts-builder": "1.2.4",
-    "@milaboratories/ts-configs": "1.2.0",
-    "@platforma-sdk/block-tools": "2.6.35",
+    "@milaboratories/ts-builder": "1.2.11",
+    "@milaboratories/ts-configs": "1.2.1",
+    "@platforma-sdk/block-tools": "2.6.62",
     "@platforma-sdk/eslint-config": "1.2.0",
     "eslint": "^9.25.1",
     "typescript": "~5.6.3",
@@ -30,7 +30,7 @@
   "scripts": {
     "build": "ts-builder build --target block-model && block-tools build-model",
     "watch": "ts-builder build --target block-model --watch",
-    "type-check": "ts-builder types --target block-model",
+    "type-check": "ts-builder type-check --target block-model",
     "lint": "eslint ."
   }
 }

package/src/index.ts

@@ -17,6 +17,7 @@ import {
   createPlDataTableStateV2,
   createPlDataTableV2,
 } from '@platforma-sdk/model';
+import { getDefaultBlockLabel } from './label';
 
 type Settings = {
   coverageThreshold: number; // fraction of aligned residues required
@@ -83,7 +84,11 @@ function getColumns(ctx: RenderCtxLegacy<BlockArgs, UiState>): Columns | undefin
 export const model = BlockModel.create()
 
   .withArgs<BlockArgs>({
-    defaultBlockLabel: '',
+    defaultBlockLabel: getDefaultBlockLabel({
+      similarityType: 'alignment-score',
+      identity: 0.9,
+      coverageThreshold: 0.95,
+    }),
     customBlockLabel: '',
     settings: {
       coverageThreshold: 0.95, // default value matching MMseqs2 default
@@ -120,7 +125,7 @@ export const model = BlockModel.create()
         { name: 'pl7.app/vdj/scClonotypeKey' },
       ],
       annotations: { 'pl7.app/isAnchor': 'true' },
-    }], { refsWithEnrichments: true }),
+    }], {}),
   )
 
   .output('targetOptions', (ctx) => {
@@ -236,3 +241,5 @@ export const model = BlockModel.create()
   ]))
 
   .done(2);
+
+export { getDefaultBlockLabel } from './label';

package/src/label.ts

@@ -0,0 +1,27 @@
+export function getDefaultBlockLabel(data: {
+  fileName?: string;
+  similarityType: 'alignment-score' | 'sequence-identity';
+  identity: number;
+  coverageThreshold: number;
+}) {
+  const parts: string[] = [];
+
+  // Add file name if available
+  if (data.fileName) {
+    parts.push(data.fileName);
+  }
+
+  // Add similarity type label
+  const similarityLabel = data.similarityType === 'alignment-score' ? 'BLOSUM' : 'Exact Match';
+  if (similarityLabel) {
+    parts.push(similarityLabel);
+  }
+
+  // Add identity threshold
+  parts.push(`ident:${data.identity}`);
+
+  // Add coverage threshold
+  parts.push(`cov:${data.coverageThreshold}`);
+
+  return parts.filter(Boolean).join(', ');
+}