@platforma-open/milaboratories.immune-assay-data.model 1.0.1 → 1.1.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@platforma-open/milaboratories.immune-assay-data.model",
-  "version": "1.0.1",
+  "version": "1.1.0",
   "description": "Block model",
   "type": "module",
   "main": "dist/index.cjs",

package/src/index.ts

@@ -12,7 +12,8 @@ import {
 
 type Settings = {
   coverageThreshold: number; // fraction of aligned residues required
-  coverageMode: 0 | 1 | 2 | 3 | 4 | 5; // MMseqs2 coverage modes
+  identity: number;
+  similarityType: 'sequence-identity' | 'alignment-score';
 };
 
 export type ImportColumnInfo = {
@@ -29,6 +30,7 @@ export type BlockArgs = {
   fileExtension?: string;
   importColumns?: ImportColumnInfo[];
   sequenceColumnHeader?: string;
+  selectedColumns: string[];
   settings: Settings;
 };
 
@@ -42,9 +44,11 @@ export const model = BlockModel.create()
 
   .withArgs<BlockArgs>({
     settings: {
-      coverageMode: 2, // default to coverage of clone,
       coverageThreshold: 0.95, // default value matching MMseqs2 default
+      identity: 0.9,
+      similarityType: 'alignment-score',
     },
+    selectedColumns: [],
   })
 
   .withUiState<UiState>({
@@ -126,6 +130,9 @@ export const model = BlockModel.create()
   )
 
   .output('table', (ctx) => {
+    if (ctx.outputs?.resolve('emptyResults')?.getDataAsJson<boolean>()) {
+      return undefined;
+    }
     const cols = ctx.outputs?.resolve('table')?.getPColumns();
     if (cols === undefined)
       return undefined;