@platforma-open/milaboratories.feature-integration.per-cell-metrics 2.0.0 → 2.1.1

package/dist/artifacts/emit-csv-meta/archive.json

@@ -1 +1 @@
-{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-csv-meta/2.0.0.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-csv-meta/2.0.0.tgz"}
+{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-csv-meta/2.1.1.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-csv-meta/2.1.1.tgz"}

package/dist/artifacts/emit-csv-meta/docker_x64.json

@@ -1 +1 @@
-{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"quay.io/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.emit-csv-meta.9617c02c1fc9","entrypoint":[]}
+{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.emit-csv-meta.a40e028530de","entrypoint":[]}

package/dist/artifacts/emit-panel/archive.json

@@ -1 +1 @@
-{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-panel/2.0.0.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-panel/2.0.0.tgz"}
+{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-panel/2.1.1.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-panel/2.1.1.tgz"}

package/dist/artifacts/emit-panel/docker_x64.json

@@ -1 +1 @@
-{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"quay.io/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.emit-panel.58eb713ff2f6","entrypoint":[]}
+{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.emit-panel.dcb6e8208940","entrypoint":[]}

package/dist/artifacts/main/archive.json

@@ -1 +1 @@
-{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/main/2.0.0.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/main/2.0.0.tgz"}
+{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/main/2.1.1.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/main/2.1.1.tgz"}

package/dist/artifacts/main/docker_x64.json

@@ -1 +1 @@
-{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"quay.io/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.main.a45bca6e8518","entrypoint":[]}
+{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.main.d7aa92eba349","entrypoint":[]}

package/dist/artifacts/parse-gate/archive.json

@@ -0,0 +1 @@
+{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/parse-gate/2.1.1.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/parse-gate/2.1.1.tgz"}

package/dist/artifacts/parse-gate/docker_x64.json

@@ -0,0 +1 @@
+{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.parse-gate.480f7c940ff6","entrypoint":[]}

package/dist/artifacts/qc-report/archive.json

@@ -1 +1 @@
-{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/qc-report/2.0.0.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/qc-report/2.0.0.tgz"}
+{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/qc-report/2.1.1.tgz","uploadPath":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/qc-report/2.1.1.tgz"}

package/dist/artifacts/qc-report/docker_x64.json

@@ -1 +1 @@
-{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"quay.io/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.qc-report.9cc123f05a61","entrypoint":[]}
+{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.qc-report.8c11075b06dd","entrypoint":[]}

package/dist/docker/Dockerfile-parse-gate

@@ -0,0 +1,22 @@
+# Auto-generated Dockerfile for Python package
+FROM python:3.12-slim
+
+WORKDIR /app
+
+
+
+# Always keep basic python packaging tools fresh to avoid CVEs even in old python versions
+RUN pip install --upgrade pip wheel setuptools
+
+# Install dependencies to leverage Docker cache
+COPY requirements.txt .
+RUN pip install --no-cache-dir -r requirements.txt
+
+# Copy package source
+COPY . /app
+
+# Set Python path
+ENV PYTHONPATH=/app
+
+# Default command (will be overridden by entrypoint)
+CMD ["bash"]

package/dist/tengo/software/emit-csv-meta.sw.json

@@ -1 +1 @@
-{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:emit-csv-meta","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-csv-meta/2.0.0.tgz","cmd":["python","{pkg}/emit_csv_meta.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"quay.io/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.emit-csv-meta.9617c02c1fc9","entrypoint":[],"cmd":["python","{pkg}/emit_csv_meta.py"],"pkg":"/app"}}
+{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:emit-csv-meta","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-csv-meta/2.1.1.tgz","cmd":["python","{pkg}/emit_csv_meta.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.emit-csv-meta.a40e028530de","entrypoint":[],"cmd":["python","{pkg}/emit_csv_meta.py"],"pkg":"/app"}}

package/dist/tengo/software/emit-panel.sw.json

@@ -1 +1 @@
-{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:emit-panel","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-panel/2.0.0.tgz","cmd":["python","{pkg}/emit_panel.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"quay.io/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.emit-panel.58eb713ff2f6","entrypoint":[],"cmd":["python","{pkg}/emit_panel.py"],"pkg":"/app"}}
+{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:emit-panel","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/emit-panel/2.1.1.tgz","cmd":["python","{pkg}/emit_panel.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.emit-panel.dcb6e8208940","entrypoint":[],"cmd":["python","{pkg}/emit_panel.py"],"pkg":"/app"}}

package/dist/tengo/software/main.sw.json

@@ -1 +1 @@
-{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:main","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/main/2.0.0.tgz","cmd":["python","{pkg}/per_cell_metrics.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"quay.io/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.main.a45bca6e8518","entrypoint":[],"cmd":["python","{pkg}/per_cell_metrics.py"],"pkg":"/app"}}
+{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:main","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/main/2.1.1.tgz","cmd":["python","{pkg}/per_cell_metrics.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.main.d7aa92eba349","entrypoint":[],"cmd":["python","{pkg}/per_cell_metrics.py"],"pkg":"/app"}}

package/dist/tengo/software/parse-gate.sw.json

@@ -0,0 +1 @@
+{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:parse-gate","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/parse-gate/2.1.1.tgz","cmd":["python","{pkg}/parse_gate.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.parse-gate.480f7c940ff6","entrypoint":[],"cmd":["python","{pkg}/parse_gate.py"],"pkg":"/app"}}

package/dist/tengo/software/qc-report.sw.json

@@ -1 +1 @@
-{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:qc-report","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/qc-report/2.0.0.tgz","cmd":["python","{pkg}/qc_report.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"quay.io/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.qc-report.9cc123f05a61","entrypoint":[],"cmd":["python","{pkg}/qc_report.py"],"pkg":"/app"}}
+{"name":"@platforma-open/milaboratories.feature-integration.per-cell-metrics:qc-report","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.feature-integration.per-cell-metrics/qc-report/2.1.1.tgz","cmd":["python","{pkg}/qc_report.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.6-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.feature-integration.per-cell-metrics.qc-report.8c11075b06dd","entrypoint":[],"cmd":["python","{pkg}/qc_report.py"],"pkg":"/app"}}

package/package.json

@@ -1,13 +1,13 @@
 {
   "name": "@platforma-open/milaboratories.feature-integration.per-cell-metrics",
-  "version": "2.0.0",
+  "version": "2.1.1",
   "files": [
     "./dist/**/*"
   ],
   "type": "module",
   "devDependencies": {
     "@platforma-open/milaboratories.runenv-python-3": "1.7.8",
-    "@platforma-sdk/block-tools": "2.12.2"
+    "@platforma-sdk/block-tools": "2.12.7"
   },
   "block-software": {
     "entrypoints": {
@@ -82,6 +82,24 @@
             "{pkg}/qc_report.py"
           ]
         }
+      },
+      "parse-gate": {
+        "binary": {
+          "artifact": {
+            "type": "python",
+            "registry": "platforma-open",
+            "environment": "@platforma-open/milaboratories.runenv-python-3:3.12.10",
+            "dependencies": {
+              "toolset": "pip",
+              "requirements": "requirements.txt"
+            },
+            "root": "./src"
+          },
+          "cmd": [
+            "python",
+            "{pkg}/parse_gate.py"
+          ]
+        }
       }
     }
   },