@platforma-open/milaboratories.clonotype-enrichment.model 3.1.2 → 3.2.1

package/.turbo/turbo-build.log

@@ -1,16 +1,16 @@
  WARN  Issue while reading "/home/runner/work/clonotype-enrichment/clonotype-enrichment/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.clonotype-enrichment.model@3.1.2 build /home/runner/work/clonotype-enrichment/clonotype-enrichment/model
+> @platforma-open/milaboratories.clonotype-enrichment.model@3.2.1 build /home/runner/work/clonotype-enrichment/clonotype-enrichment/model
 > ts-builder build --target block-model && block-tools build-model
 
 Building block-model project...
 ↳ rollup -c /home/runner/work/clonotype-enrichment/clonotype-enrichment/node_modules/.pnpm/@milaboratories+ts-builder@1.2.9_@types+node@24.5.2_sass-embedded@1.89.0_tslib@2.8.1_yaml@2.8.2/node_modules/@milaboratories/ts-builder/dist/configs/rollup.block-model.config.js
 
 ./src/index.ts → dist, dist...
-created dist, dist in 3.4s
+created dist, dist in 3s
 
 ./src/index.ts → dist...
 (!) Circular dependency
 ../node_modules/.pnpm/@platforma-sdk+model@1.53.15/node_modules/@platforma-sdk/model/dist/components/PFrameForGraphs.js -> ../node_modules/.pnpm/@platforma-sdk+model@1.53.15/node_modules/@platforma-sdk/model/dist/pframe_utils/columns.js -> ../node_modules/.pnpm/@platforma-sdk+model@1.53.15/node_modules/@platforma-sdk/model/dist/components/PFrameForGraphs.js
-created dist in 4.3s
+created dist in 3.6s
 Build completed successfully

package/.turbo/turbo-lint.log

@@ -1,5 +1,5 @@
  WARN  Issue while reading "/home/runner/work/clonotype-enrichment/clonotype-enrichment/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.clonotype-enrichment.model@3.1.2 lint /home/runner/work/clonotype-enrichment/clonotype-enrichment/model
+> @platforma-open/milaboratories.clonotype-enrichment.model@3.2.1 lint /home/runner/work/clonotype-enrichment/clonotype-enrichment/model
 > eslint .
 

package/.turbo/turbo-type-check.log

@@ -1,6 +1,6 @@
  WARN  Issue while reading "/home/runner/work/clonotype-enrichment/clonotype-enrichment/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.clonotype-enrichment.model@3.1.2 type-check /home/runner/work/clonotype-enrichment/clonotype-enrichment/model
+> @platforma-open/milaboratories.clonotype-enrichment.model@3.2.1 type-check /home/runner/work/clonotype-enrichment/clonotype-enrichment/model
 > ts-builder type-check --target block-model
 
 ↳ tsc --noEmit --project ./tsconfig.json --customConditions ,

package/CHANGELOG.md

@@ -1,5 +1,17 @@
 # @platforma-open/milaboratories.clonotype-enrichment.model
 
+## 3.2.1
+
+### Patch Changes
+
+- bf55aca: Modify default pseudocount
+
+## 3.2.0
+
+### Minor Changes
+
+- 8956099: Library selection by metadata and bug fixes
+
 ## 3.1.2
 
 ### Patch Changes

package/dist/bundle.js

@@ -8652,6 +8652,7 @@
                 rounds: [],
                 logic: 'OR',
             },
+            excludeSequencedLibrary: true,
         },
         additionalEnrichmentExports: [],
         antigenControlConfig: {
@@ -8663,12 +8664,12 @@
             singleControlFrequencyThreshold: 0.01,
             controlConditionsOrder: [],
             sequencedLibraryEnabled: false,
-            sequencedLibrarySampleId: undefined,
+            sequencedLibraryAntigen: undefined,
             hasSingleConditionNegativeControl: false,
             hasMultiConditionNegativeControl: false,
         },
         enrichmentThreshold: 2.0,
-        pseudoCount: 100,
+        pseudoCount: 1,
     })
         .withUiState({
         tableState: createPlDataTableStateV2(),
@@ -8733,6 +8734,16 @@
                 || antigenControlConfig.singleControlFrequencyThreshold === undefined)
                 return false;
         }
+        if (antigenControlConfig.sequencedLibraryEnabled) {
+            if (!antigenControlConfig.sequencedLibraryAntigen)
+                return false;
+            if (conditionOrder.length === 0)
+                return false; // no conditions to compare to
+        }
+        else {
+            if (conditionOrder.length <= 1)
+                return false; // no conditions to compare to
+        }
         return true;
     })
         .output('abundanceOptions', (ctx) => ctx.resultPool.getOptions([{
@@ -8808,16 +8819,6 @@
             antigenColId = antigenCols?.[0]?.id;
         }
         return { conditionColId, antigenColId };
-    })
-        // Sample id → label map for all datasets from sample Samples & Data block
-        .output('sampleLabels', (ctx) => {
-        const { abundanceRef: anchor } = ctx.args;
-        if (!anchor)
-            return undefined;
-        const spec = ctx.resultPool.getPColumnSpecByRef(anchor);
-        if (!spec || !spec.axesSpec[0])
-            return undefined;
-        return ctx.resultPool.findLabels(spec.axesSpec[0]);
     })
         // Get only the sample IDs from the selected abundance column
         .output('sampleIds', (ctx) => {
@@ -8971,14 +8972,13 @@
             { type: 'link', href: '/stacked', label: 'Frequency Bar Plot' },
         ];
         if (ctx.args.antigenControlConfig.controlEnabled) {
-            if (ctx.args.antigenControlConfig.hasMultiConditionNegativeControl
-                && !(ctx.args.antigenControlConfig.sequencedLibraryEnabled === false
+            if (ctx.args.antigenControlConfig.controlConditionsOrder.length > 1
+                || (ctx.args.antigenControlConfig.sequencedLibraryEnabled === true
                     && ctx.args.antigenControlConfig.controlConditionsOrder.length === 1)) {
                 sections.push({ type: 'link', href: '/scatter', label: 'Control Scatter Plot' });
             }
-            if (ctx.args.antigenControlConfig.hasSingleConditionNegativeControl
-                || (ctx.args.antigenControlConfig.sequencedLibraryEnabled === false
-                    && ctx.args.antigenControlConfig.controlConditionsOrder.length === 1)) {
+            if (ctx.args.antigenControlConfig.sequencedLibraryEnabled === false
+                && ctx.args.antigenControlConfig.controlConditionsOrder.length === 1) {
                 sections.push({ type: 'link', href: '/box', label: 'Control Box Plot' });
             }
         }