@platforma-open/milaboratories.clonotype-clustering.software 3.9.6 → 3.9.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/artifacts/create-empty-files/archive.json +1 -0
- package/dist/artifacts/create-empty-files/docker_x64.json +1 -0
- package/dist/artifacts/empty-check/archive.json +1 -1
- package/dist/artifacts/empty-check/docker_x64.json +1 -1
- package/dist/artifacts/prepare-fasta/archive.json +1 -1
- package/dist/artifacts/prepare-fasta/docker_x64.json +1 -1
- package/dist/artifacts/process-results/archive.json +1 -1
- package/dist/artifacts/process-results/docker_x64.json +1 -1
- package/dist/docker/Dockerfile-create-empty-files +22 -0
- package/dist/docker/Dockerfile-empty-check +3 -3
- package/dist/docker/Dockerfile-prepare-fasta +3 -3
- package/dist/docker/Dockerfile-process-results +3 -3
- package/dist/tengo/software/create-empty-files.sw.json +1 -0
- package/dist/tengo/software/empty-check.sw.json +1 -1
- package/dist/tengo/software/prepare-fasta.sw.json +1 -1
- package/dist/tengo/software/process-results.sw.json +1 -1
- package/package.json +21 -3
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{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.clonotype-clustering.software/create-empty-files/3.9.8.tgz","uploadPath":"software/platforma-open/milaboratories.clonotype-clustering.software/create-empty-files/3.9.8.tgz"}
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{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.create-empty-files.be57004d460c"}
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{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.clonotype-clustering.software/empty-check/3.9.
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{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.clonotype-clustering.software/empty-check/3.9.8.tgz","uploadPath":"software/platforma-open/milaboratories.clonotype-clustering.software/empty-check/3.9.8.tgz"}
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{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.empty-check.
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{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.empty-check.1b5c10cf2e83"}
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{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.clonotype-clustering.software/prepare-fasta/3.9.
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{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.clonotype-clustering.software/prepare-fasta/3.9.8.tgz","uploadPath":"software/platforma-open/milaboratories.clonotype-clustering.software/prepare-fasta/3.9.8.tgz"}
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{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.prepare-fasta.
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{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.prepare-fasta.1d7593ab8a3a"}
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{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.clonotype-clustering.software/process-results/3.9.
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{"type":"python","platform":"linux-x64","registryURL":"https://bin.pl-open.science/","registryName":"platforma-open","remoteArtifactLocation":"software/platforma-open/milaboratories.clonotype-clustering.software/process-results/3.9.8.tgz","uploadPath":"software/platforma-open/milaboratories.clonotype-clustering.software/process-results/3.9.8.tgz"}
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{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.process-results.
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{"type":"docker","platform":"linux-x64","remoteArtifactLocation":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.process-results.bff61eaa25ba"}
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# Auto-generated Dockerfile for Python package
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FROM python:3.12-slim
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WORKDIR /app
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# Always keep basic python packaging tools fresh to avoid CVEs even in old python versions
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RUN pip install --upgrade pip wheel setuptools
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# Install dependencies to leverage Docker cache
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COPY requirements.txt .
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RUN pip install --no-cache-dir -r requirements.txt
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# Copy package source
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COPY . /app
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# Set Python path
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ENV PYTHONPATH=/app
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# Default command (will be overridden by entrypoint)
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CMD ["bash"]
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# Auto-generated Dockerfile for Python package
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FROM python:3.12-slim
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WORKDIR /app
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WORKDIR /app
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RUN pip install --no-cache-dir -r requirements.txt
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# Copy package source
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COPY . /app
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COPY . /app
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# Set Python path
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ENV PYTHONPATH=/app
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ENV PYTHONPATH=/app
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# Default command (will be overridden by entrypoint)
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CMD ["bash"]
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# Auto-generated Dockerfile for Python package
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FROM python:3.12-slim
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WORKDIR /app
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WORKDIR /app
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# Copy package source
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COPY . /app
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COPY . /app
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# Set Python path
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ENV PYTHONPATH=/app
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ENV PYTHONPATH=/app
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# Default command (will be overridden by entrypoint)
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CMD ["bash"]
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# Auto-generated Dockerfile for Python package
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WORKDIR /app
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COPY . /app
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COPY . /app
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# Set Python path
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ENV PYTHONPATH=/app
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ENV PYTHONPATH=/app
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# Default command (will be overridden by entrypoint)
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CMD ["bash"]
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{"name":"@platforma-open/milaboratories.clonotype-clustering.software:create-empty-files","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.clonotype-clustering.software/create-empty-files/3.9.8.tgz","cmd":["python","{pkg}/create-empty-files.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.2-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.create-empty-files.be57004d460c","entrypoint":[],"cmd":["python","{pkg}/create-empty-files.py"],"pkg":"/app"}}
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{"name":"@platforma-open/milaboratories.clonotype-clustering.software:empty-check","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.clonotype-clustering.software/empty-check/3.9.
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{"name":"@platforma-open/milaboratories.clonotype-clustering.software:empty-check","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.clonotype-clustering.software/empty-check/3.9.8.tgz","cmd":["python","{pkg}/emptyCheck.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.2-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.empty-check.1b5c10cf2e83","entrypoint":[],"cmd":["python","{pkg}/emptyCheck.py"],"pkg":"/app"}}
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{"name":"@platforma-open/milaboratories.clonotype-clustering.software:prepare-fasta","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.clonotype-clustering.software/prepare-fasta/3.9.
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{"name":"@platforma-open/milaboratories.clonotype-clustering.software:prepare-fasta","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.clonotype-clustering.software/prepare-fasta/3.9.8.tgz","cmd":["python","{pkg}/prepare_fasta.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.2-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.prepare-fasta.1d7593ab8a3a","entrypoint":[],"cmd":["python","{pkg}/prepare_fasta.py"],"pkg":"/app"}}
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{"name":"@platforma-open/milaboratories.clonotype-clustering.software:process-results","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.clonotype-clustering.software/process-results/3.9.
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{"name":"@platforma-open/milaboratories.clonotype-clustering.software:process-results","binary":{"type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.clonotype-clustering.software/process-results/3.9.8.tgz","cmd":["python","{pkg}/process_results.py"],"envVars":[],"runEnv":{"name":"@platforma-open/milaboratories.runenv-python-3:3.12.10","type":"python","registry":"platforma-open","package":"software/platforma-open/milaboratories.runenv-python-3.12.10/main/1.3.2-{os}-{arch}.tgz","python-version":"3.12.10","envVars":[],"binDir":"bin"},"toolset":"pip","dependencies":{"requirements":"requirements.txt"}},"docker":{"tag":"containers.pl-open.science/milaboratories/pl-containers:platforma-open.milaboratories.clonotype-clustering.software.process-results.bff61eaa25ba","entrypoint":[],"cmd":["python","{pkg}/process_results.py"],"pkg":"/app"}}
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package/package.json
CHANGED
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{
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"name": "@platforma-open/milaboratories.clonotype-clustering.software",
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"version": "3.9.
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"version": "3.9.8",
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"files": [
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"./dist/**/*"
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],
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"dependencies": {},
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"devDependencies": {
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"@platforma-sdk/package-builder": "^3.
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"@platforma-open/milaboratories.runenv-python-3": "^1.
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"@platforma-sdk/package-builder": "^3.10.7",
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"@platforma-open/milaboratories.runenv-python-3": "^1.7.3"
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},
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"block-software": {
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"entrypoints": {
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"{pkg}/emptyCheck.py"
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]
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}
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},
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"create-empty-files": {
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"binary": {
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"artifact": {
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"type": "python",
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"registry": "platforma-open",
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"environment": "@platforma-open/milaboratories.runenv-python-3:3.12.10",
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"dependencies": {
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"toolset": "pip",
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"requirements": "requirements.txt"
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},
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"root": "./src"
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},
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"cmd": [
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"python",
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"{pkg}/create-empty-files.py"
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]
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}
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}
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}
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},
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