@platforma-open/milaboratories.clonotype-clustering.model 2.5.1 → 2.6.0

package/.turbo/turbo-build.log

@@ -1,6 +1,6 @@
  WARN  Issue while reading "/home/runner/work/clonotype-clustering/clonotype-clustering/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
 
-> @platforma-open/milaboratories.clonotype-clustering.model@2.5.1 build /home/runner/work/clonotype-clustering/clonotype-clustering/model
+> @platforma-open/milaboratories.clonotype-clustering.model@2.6.0 build /home/runner/work/clonotype-clustering/clonotype-clustering/model
 > tsup && vite build && block-tools build-model
 
 CLI Building entry: src/index.ts
@@ -11,21 +11,21 @@
 CLI Cleaning output folder
 CJS Build start
 ESM Build start
-ESM dist/index.js     3.42 KB
-ESM dist/index.js.map 8.21 KB
-ESM ⚡️ Build success in 113ms
-CJS dist/index.cjs     3.42 KB
-CJS dist/index.cjs.map 8.27 KB
-CJS ⚡️ Build success in 114ms
+ESM dist/index.js     4.51 KB
+ESM dist/index.js.map 10.87 KB
+ESM ⚡️ Build success in 157ms
+CJS dist/index.cjs     4.52 KB
+CJS dist/index.cjs.map 10.94 KB
+CJS ⚡️ Build success in 158ms
 DTS Build start
-DTS ⚡️ Build success in 2251ms
-DTS dist/index.d.cts 4.12 KB
-DTS dist/index.d.ts  4.12 KB
+DTS ⚡️ Build success in 2353ms
+DTS dist/index.d.cts 5.17 KB
+DTS dist/index.d.ts  5.17 KB
 vite v6.3.5 building for production...
 transforming...
 ✓ 11 modules transformed.
 rendering chunks...
 computing gzip size...
-dist/bundle.js  191.12 kB │ gzip: 37.52 kB │ map: 406.27 kB
-dist/bundle.js  204.19 kB │ gzip: 38.19 kB │ map: 407.89 kB
-✓ built in 696ms
+dist/bundle.js  192.45 kB │ gzip: 37.73 kB │ map: 408.53 kB
+dist/bundle.js  205.60 kB │ gzip: 38.40 kB │ map: 410.16 kB
+✓ built in 721ms

package/CHANGELOG.md

@@ -1,5 +1,11 @@
 # @platforma-open/milaboratories.clonotype-clustering.model
 
+## 2.6.0
+
+### Minor Changes
+
+- d536272: MSA for clusters
+
 ## 2.5.1
 
 ### Patch Changes

package/dist/bundle.js

@@ -6228,7 +6228,8 @@
           normalizationDirection: null
         }
       }
-    }
+    },
+    alignmentModel: {}
   }).argsValid((ctx) => ctx.args.datasetRef !== void 0 && ctx.args.sequencesRef.length > 0).output(
     "datasetOptions",
     (ctx) => ctx.resultPool.getOptions(
@@ -6279,7 +6280,12 @@
     return ctx.resultPool.getCanonicalOptions(
       { main: ref },
       sequenceMatchers,
-      { ignoreMissingDomains: true }
+      {
+        ignoreMissingDomains: true,
+        labelOps: {
+          includeNativeLabel: true
+        }
+      }
     );
   }).output("isSingleCell", (ctx) => {
     if (ctx.args.datasetRef === void 0) return void 0;
@@ -6300,11 +6306,44 @@
       (_) => true,
       (_c = ctx.uiState) == null ? void 0 : _c.tableState
     );
+  }).output("msaPf", (ctx) => {
+    var _a, _b;
+    const msaCols = (_b = (_a = ctx.outputs) == null ? void 0 : _a.resolve("msaPf")) == null ? void 0 : _b.getPColumns();
+    if (!msaCols) return void 0;
+    const datasetRef = ctx.args.datasetRef;
+    if (datasetRef === void 0)
+      return void 0;
+    const sequencesRef = ctx.args.sequencesRef;
+    if (sequencesRef.length === 0)
+      return void 0;
+    const seqCols = ctx.resultPool.getAnchoredPColumns(
+      { main: datasetRef },
+      sequencesRef.map((s2) => JSON.parse(s2))
+    );
+    if (seqCols === void 0)
+      return void 0;
+    return Dn(ctx, [...msaCols, ...seqCols]);
+  }).output("linkerColumnId", (ctx) => {
+    var _a, _b, _c;
+    const pCols = (_b = (_a = ctx.outputs) == null ? void 0 : _a.resolve("msaPf")) == null ? void 0 : _b.getPColumns();
+    if (!pCols) return void 0;
+    return (_c = pCols.find((p2) => {
+      var _a2;
+      return ((_a2 = p2.spec.annotations) == null ? void 0 : _a2["pl7.app/isLinkerColumn"]) === "true";
+    })) == null ? void 0 : _c.id;
   }).output("clusterAbundanceSpec", (ctx) => {
     var _a, _b;
     const spec = (_b = (_a = ctx.outputs) == null ? void 0 : _a.resolve("clusterAbundanceSpec")) == null ? void 0 : _b.getDataAsJson();
     if (spec === void 0) return void 0;
     return spec;
+  }).output("inputSpec", (ctx) => {
+    const anchor = ctx.args.datasetRef;
+    if (anchor === void 0)
+      return void 0;
+    const anchorSpec = ctx.resultPool.getPColumnSpecByRef(anchor);
+    if (anchorSpec === void 0)
+      return void 0;
+    return anchorSpec;
   }).output("clustersPf", (ctx) => {
     var _a, _b;
     const pCols = (_b = (_a = ctx.outputs) == null ? void 0 : _a.resolve("pf")) == null ? void 0 : _b.getPColumns();