@planu/cli 1.5.0 → 1.6.0

package/dist/engine/hooks-reconciler.d.ts

@@ -1,4 +1,10 @@
-import type { HooksReconciliation } from '../types/index.js';
+import type { HooksReconciliation, HooksPatchResult } from '../types/index.js';
+/**
+ * Auto-patch husky hook files with missing quality checks.
+ * Idempotent: checks already present in the file are reported as skipped.
+ * Only works for husky manager — returns empty patch for other managers.
+ */
+export declare function patchHooks(missingChecks: string[], projectPath: string): HooksPatchResult;
 /**
  * Analyse git hooks against detected project capabilities and report drift.
  * Never throws — returns a zero-score result on unexpected errors.

package/dist/engine/hooks-reconciler.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"hooks-reconciler.d.ts","sourceRoot":"","sources":["../../src/engine/hooks-reconciler.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EACV,mBAAmB,EAInB,gBAAgB,EAEjB,MAAM,mBAAmB,CAAC;AAiT3B;;;;GAIG;AACH,wBAAgB,UAAU,CAAC,aAAa,EAAE,MAAM,EAAE,EAAE,WAAW,EAAE,MAAM,GAAG,gBAAgB,CAsCzF;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,WAAW,EAAE,MAAM,GAAG,mBAAmB,CA+CvE"}

package/dist/engine/hooks-reconciler.js

@@ -1,6 +1,6 @@
 // engine/hooks-reconciler.ts — Detect drift between CI/quality pipeline and git hooks.
-// Read-only analysis: never modifies hook scripts.
-import { readFileSync, existsSync, readdirSync } from 'node:fs';
+// Read-only analysis by default; patchHooks() writes fixes when autoFix is enabled.
+import { readFileSync, existsSync, readdirSync, writeFileSync } from 'node:fs';
 import { join } from 'node:path';
 // ---------------------------------------------------------------------------
 // Helpers
@@ -152,8 +152,133 @@ function detectOutdatedChecks(scripts, caps) {
     return outdated;
 }
 // ---------------------------------------------------------------------------
+// Lint-staged detection helpers
+// ---------------------------------------------------------------------------
+function lintStagedCoversPrettier(pkg) {
+    const ls = pkg['lint-staged'];
+    if (!ls || typeof ls !== 'object') {
+        return false;
+    }
+    const entries = Object.values(ls);
+    return entries.some((v) => {
+        if (typeof v === 'string') {
+            return v.includes('prettier');
+        }
+        if (Array.isArray(v)) {
+            return v.some((cmd) => typeof cmd === 'string' && cmd.includes('prettier'));
+        }
+        return false;
+    });
+}
+function lintStagedCoversEslint(pkg) {
+    const ls = pkg['lint-staged'];
+    if (!ls || typeof ls !== 'object') {
+        return false;
+    }
+    const entries = Object.values(ls);
+    return entries.some((v) => {
+        if (typeof v === 'string') {
+            return /eslint|lint/.test(v);
+        }
+        if (Array.isArray(v)) {
+            return v.some((cmd) => typeof cmd === 'string' && /eslint|lint/.test(cmd));
+        }
+        return false;
+    });
+}
+// ---------------------------------------------------------------------------
+// Patch helpers
+// ---------------------------------------------------------------------------
+const HUSKY_SHEBANG = '#!/usr/bin/env sh\n. "$(dirname -- "$0")/_/husky.sh"\n';
+function readHookFile(hookPath) {
+    try {
+        return readFileSync(hookPath, 'utf-8');
+    }
+    catch {
+        return '';
+    }
+}
+function writeHookFile(hookPath, content) {
+    writeFileSync(hookPath, content, { encoding: 'utf-8', mode: 0o755 });
+}
+function buildPatchCandidates(missingChecks, pkg) {
+    const candidates = [];
+    const prettierCoveredByLintStaged = lintStagedCoversPrettier(pkg);
+    const eslintCoveredByLintStaged = lintStagedCoversEslint(pkg);
+    for (const check of missingChecks) {
+        if (check.includes('TypeScript') && check.includes('pre-commit')) {
+            candidates.push({ hook: 'pre-commit', line: 'pnpm typecheck', description: check });
+        }
+        else if (check.includes('ESLint') && check.includes('pre-commit')) {
+            if (!eslintCoveredByLintStaged) {
+                candidates.push({ hook: 'pre-commit', line: 'pnpm lint', description: check });
+            }
+        }
+        else if (check.includes('test') && check.includes('pre-push')) {
+            candidates.push({ hook: 'pre-push', line: 'pnpm test', description: check });
+        }
+        else if (check.includes('commit-msg') && check.includes('no commit-msg hook')) {
+            candidates.push({
+                hook: 'commit-msg',
+                line: 'npx --no -- commitlint --edit "$1"',
+                description: check,
+            });
+        }
+        else if (check.includes('commit-msg') && check.includes('does not invoke commitlint')) {
+            candidates.push({
+                hook: 'commit-msg',
+                line: 'npx --no -- commitlint --edit "$1"',
+                description: check,
+            });
+        }
+        else if (check.includes('prettier') && !prettierCoveredByLintStaged) {
+            candidates.push({
+                hook: 'pre-commit',
+                line: 'npx prettier --check .',
+                description: check,
+            });
+        }
+    }
+    return candidates;
+}
+// ---------------------------------------------------------------------------
 // Public API
 // ---------------------------------------------------------------------------
+/**
+ * Auto-patch husky hook files with missing quality checks.
+ * Idempotent: checks already present in the file are reported as skipped.
+ * Only works for husky manager — returns empty patch for other managers.
+ */
+export function patchHooks(missingChecks, projectPath) {
+    const pkg = readPackageJson(projectPath);
+    const manager = detectHookManager(projectPath, pkg);
+    if (manager !== 'husky') {
+        return { patched: [], skipped: missingChecks.slice(), healthScore: 0 };
+    }
+    const huskyDir = join(projectPath, '.husky');
+    const candidates = buildPatchCandidates(missingChecks, pkg);
+    const patched = [];
+    const skipped = [];
+    for (const candidate of candidates) {
+        const hookPath = join(huskyDir, candidate.hook);
+        let current = readHookFile(hookPath);
+        if (current.includes(candidate.line)) {
+            skipped.push(candidate.description);
+            continue;
+        }
+        if (current === '') {
+            current = HUSKY_SHEBANG;
+        }
+        const updated = current.endsWith('\n')
+            ? `${current}${candidate.line}\n`
+            : `${current}\n${candidate.line}\n`;
+        writeHookFile(hookPath, updated);
+        patched.push({ hook: candidate.hook, added: candidate.line });
+    }
+    // Re-run analysis to get updated health score
+    const afterReconcile = reconcileHooks(projectPath);
+    return { patched, skipped, healthScore: afterReconcile.healthScore };
+}
 /**
  * Analyse git hooks against detected project capabilities and report drift.
  * Never throws — returns a zero-score result on unexpected errors.

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package/dist/engine/skills-reconciler.d.ts

@@ -1,4 +1,4 @@
-import type { SkillsReconciliation, ProjectKnowledge } from '../types/index.js';
+import type { SkillsReconciliation, SkillsAutoFixResult, ProjectKnowledge } from '../types/index.js';
 export type { SkillsReconciliation };
 /**
  * Scan the project's installed skills against the recommended set for its current stack.
@@ -12,4 +12,13 @@ export type { SkillsReconciliation };
  *   6. Compute health score and return the reconciliation report.
  */
 export declare function reconcileSkills(projectPath: string, knowledge: ProjectKnowledge | null): Promise<SkillsReconciliation>;
+/**
+ * Auto-fix the skills installation to match the reconciliation report:
+ *  1. Install each skill listed in `newSkillsDetected` (using the builtin source as fallback).
+ *  2. Remove each skill listed in `staleSkills` from disk and the manifest.
+ *  3. Detect and fix corrupt manifest entries (path does not exist on disk).
+ *
+ * Returns a summary of all actions taken plus the new health score.
+ */
+export declare function autoFixSkills(reconciliation: SkillsReconciliation, projectPath: string): Promise<SkillsAutoFixResult>;
 //# sourceMappingURL=skills-reconciler.d.ts.map

package/dist/engine/skills-reconciler.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"skills-reconciler.d.ts","sourceRoot":"","sources":["../../src/engine/skills-reconciler.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EACV,oBAAoB,EACpB,mBAAmB,EACnB,gBAAgB,EAGjB,MAAM,mBAAmB,CAAC;AAE3B,YAAY,EAAE,oBAAoB,EAAE,CAAC;AAErC;;;;;;;;;;GAUG;AACH,wBAAsB,eAAe,CACnC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,gBAAgB,GAAG,IAAI,GACjC,OAAO,CAAC,oBAAoB,CAAC,CA8B/B;AAsED;;;;;;;GAOG;AACH,wBAAsB,aAAa,CACjC,cAAc,EAAE,oBAAoB,EACpC,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC,mBAAmB,CAAC,CAiB9B"}

package/dist/engine/skills-reconciler.js

@@ -1,9 +1,9 @@
 // engine/skills-reconciler.ts — SPEC-189: Detect stack changes and reconcile skills
+// SPEC-395: autoFixSkills — install missing, remove stale, repair corrupt paths.
 // Compares recommended skills (based on current stack) with installed skills.
-// Read-only analysis — does NOT install or remove anything.
 import * as fs from 'node:fs/promises';
 import * as path from 'node:path';
-import { readSkillManifest } from './skill-registry/installer.js';
+import { readSkillManifest, installSkill } from './skill-registry/installer.js';
 import { fetchRecommendedSkills } from './skills/skills-fetcher.js';
 /**
  * Scan the project's installed skills against the recommended set for its current stack.
@@ -95,4 +95,130 @@ function buildEmptyReconciliation(_reason) {
         healthScore: 0,
     };
 }
+// ---------------------------------------------------------------------------
+// SPEC-395: autoFixSkills — mutating reconciliation
+// ---------------------------------------------------------------------------
+/**
+ * Auto-fix the skills installation to match the reconciliation report:
+ *  1. Install each skill listed in `newSkillsDetected` (using the builtin source as fallback).
+ *  2. Remove each skill listed in `staleSkills` from disk and the manifest.
+ *  3. Detect and fix corrupt manifest entries (path does not exist on disk).
+ *
+ * Returns a summary of all actions taken plus the new health score.
+ */
+export async function autoFixSkills(reconciliation, projectPath) {
+    const installed = await installMissingSkills(reconciliation.newSkillsDetected, projectPath);
+    const removed = await removeStaleSkills(reconciliation.staleSkills, projectPath);
+    const pathsFixed = await fixCorruptPaths(projectPath);
+    // Re-read the manifest after all mutations to compute the new health score.
+    const updatedManifest = await readSkillManifest(projectPath);
+    const totalInstalled = updatedManifest.skills.length;
+    const staleCount = 0; // All stale skills have been removed.
+    const healthScore = computeHealthScore(totalInstalled + reconciliation.newSkillsDetected.length - installed.length, totalInstalled, staleCount);
+    return { installed, removed, pathsFixed, healthScore };
+}
+/** Install each missing skill using the 'builtin' source as a local placeholder. */
+async function installMissingSkills(skillNames, projectPath) {
+    const successfullyInstalled = [];
+    for (const skillName of skillNames) {
+        try {
+            await installSkill(skillName, 'builtin', projectPath);
+            successfullyInstalled.push(skillName);
+        }
+        catch {
+            // Non-blocking — skip skills that fail to install.
+        }
+    }
+    return successfullyInstalled;
+}
+/** Remove stale skills from disk (directory) and from the manifest. */
+async function removeStaleSkills(staleNames, projectPath) {
+    const skillsDir = path.join(projectPath, '.claude', 'skills');
+    const removed = [];
+    for (const skillName of staleNames) {
+        const skillDir = path.join(skillsDir, skillName);
+        const skillFile = path.join(skillsDir, `${skillName}.md`);
+        // Remove directory-based skill.
+        try {
+            await fs.rm(skillDir, { recursive: true, force: true });
+        }
+        catch {
+            /* v8 ignore next 1 */
+        }
+        // Remove flat .md-based skill.
+        try {
+            await fs.rm(skillFile, { force: true });
+        }
+        catch {
+            /* v8 ignore next 1 */
+        }
+        removed.push(skillName);
+    }
+    if (removed.length > 0) {
+        await removeFromManifest(projectPath, new Set(removed));
+    }
+    return removed;
+}
+/** Remove entries from the manifest by name. */
+async function removeFromManifest(projectPath, namesToRemove) {
+    const manifest = await readSkillManifest(projectPath);
+    const updated = {
+        ...manifest,
+        skills: manifest.skills.filter((s) => !namesToRemove.has(s.name)),
+    };
+    const manifestFile = path.join(projectPath, '.claude', 'skills', 'manifest.json');
+    await fs.mkdir(path.dirname(manifestFile), { recursive: true });
+    await fs.writeFile(manifestFile, JSON.stringify(updated, null, 2), 'utf-8');
+}
+/**
+ * Detect manifest entries whose recorded `path` does not exist on disk and attempt to
+ * find the skill by name inside `.claude/skills/`. Updates the manifest in place.
+ */
+async function fixCorruptPaths(projectPath) {
+    const manifest = await readSkillManifest(projectPath);
+    const skillsDir = path.join(projectPath, '.claude', 'skills');
+    const fixed = [];
+    const updatedSkills = [];
+    for (const entry of manifest.skills) {
+        const pathExists = await checkPathExists(entry.path);
+        if (pathExists) {
+            updatedSkills.push(entry);
+            continue;
+        }
+        // Try to locate the skill by its name inside the skills directory.
+        const candidateDir = path.join(skillsDir, entry.name);
+        const candidateFile = path.join(skillsDir, `${entry.name}.md`);
+        const dirExists = await checkPathExists(candidateDir);
+        const fileExists = await checkPathExists(candidateFile);
+        if (dirExists) {
+            updatedSkills.push({ ...entry, path: candidateDir });
+            fixed.push(entry.name);
+        }
+        else if (fileExists) {
+            updatedSkills.push({ ...entry, path: candidateFile });
+            fixed.push(entry.name);
+        }
+        else {
+            // Cannot locate the skill — keep the entry as-is (do not silently remove).
+            updatedSkills.push(entry);
+        }
+    }
+    if (fixed.length > 0) {
+        const updatedManifest = { ...manifest, skills: updatedSkills };
+        const manifestFile = path.join(skillsDir, 'manifest.json');
+        await fs.mkdir(skillsDir, { recursive: true });
+        await fs.writeFile(manifestFile, JSON.stringify(updatedManifest, null, 2), 'utf-8');
+    }
+    return fixed;
+}
+/** Return true if the given path exists (file or directory). */
+async function checkPathExists(targetPath) {
+    try {
+        await fs.access(targetPath);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
 //# sourceMappingURL=skills-reconciler.js.map

package/dist/engine/skills-reconciler.js.map

@@ -1 +1 @@
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package/dist/tools/reconcile-hooks.d.ts

@@ -2,6 +2,11 @@ import type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
 import type { ToolResult } from '../types/index.js';
 export declare function handleReconcileHooks(args: {
     projectPath: string;
+    autoFix?: boolean;
+}): ToolResult;
+export declare function handleReconcileHooksAsync(args: {
+    projectPath: string;
+    autoFix?: boolean;
 }): ToolResult;
 export declare function registerReconcileHooksTool(server: McpServer): void;
 //# sourceMappingURL=reconcile-hooks.d.ts.map

package/dist/tools/reconcile-hooks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"reconcile-hooks.d.ts","sourceRoot":"","sources":["../../src/tools/reconcile-hooks.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAEzE,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAqEpD,wBAAgB,oBAAoB,CAAC,IAAI,EAAE;IAAE,WAAW,EAAE,MAAM,CAAA;CAAE,GAAG,UAAU,CAK9E;AAMD,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAelE"}
+{"version":3,"file":"reconcile-hooks.d.ts","sourceRoot":"","sources":["../../src/tools/reconcile-hooks.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAEzE,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AA8HpD,wBAAgB,oBAAoB,CAAC,IAAI,EAAE;IAAE,WAAW,EAAE,MAAM,CAAC;IAAC,OAAO,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,UAAU,CAKjG;AAED,wBAAgB,yBAAyB,CAAC,IAAI,EAAE;IAC9C,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB,GAAG,UAAU,CAab;AAMD,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAgBlE"}

package/dist/tools/reconcile-hooks.js

@@ -1,7 +1,8 @@
 // tools/reconcile-hooks.ts — MCP tool: reconcile_hooks
 // Detects drift between CI/quality pipeline and git hooks.
+// With autoFix:true, patches husky hook files with missing quality checks.
 import { z } from 'zod';
-import { reconcileHooks } from '../engine/hooks-reconciler.js';
+import { reconcileHooks, patchHooks } from '../engine/hooks-reconciler.js';
 import { safeTracked } from './safe-handler.js';
 // ---------------------------------------------------------------------------
 // Zod schema
@@ -11,6 +12,11 @@ const reconcileHooksSchema = {
         .string()
         .max(4096)
         .describe('Absolute path to the project root to analyse git hooks against CI capabilities'),
+    autoFix: z
+        .boolean()
+        .optional()
+        .describe('When true, automatically patches husky hook files to add missing quality checks. ' +
+        'Idempotent: checks already present are skipped. Default: false.'),
 };
 // ---------------------------------------------------------------------------
 // Formatter
@@ -52,6 +58,44 @@ function formatReconciliation(result) {
     }
     return lines.join('\n');
 }
+function formatPatchResult(reconcileResult, patchResult) {
+    const lines = [];
+    lines.push('# Hooks Reconciliation Report (Auto-Fix Applied)');
+    lines.push('');
+    lines.push(`## Health Score: ${patchResult.healthScore}/100`);
+    lines.push('');
+    lines.push(`- Status: **${reconcileResult.hooksInSync ? 'IN SYNC' : 'DRIFT DETECTED (before fix)'}**`);
+    lines.push('');
+    if (patchResult.patched.length > 0) {
+        lines.push('## Patched Checks');
+        lines.push('');
+        for (const p of patchResult.patched) {
+            lines.push(`  - ${p.hook}: \`${p.added}\``);
+        }
+        lines.push('');
+    }
+    if (patchResult.skipped.length > 0) {
+        lines.push('## Skipped (already present or covered by lint-staged)');
+        lines.push('');
+        for (const s of patchResult.skipped) {
+            lines.push(`  - ${s}`);
+        }
+        lines.push('');
+    }
+    if (patchResult.patched.length === 0 && patchResult.skipped.length === 0) {
+        lines.push('No patches needed — hooks are already up to date.');
+        lines.push('');
+    }
+    if (reconcileResult.outdatedHooks.length > 0) {
+        lines.push('## Enhancement Opportunities (not auto-fixed)');
+        lines.push('');
+        for (const item of reconcileResult.outdatedHooks) {
+            lines.push(`  - ${item}`);
+        }
+        lines.push('');
+    }
+    return lines.join('\n');
+}
 // ---------------------------------------------------------------------------
 // Handler
 // ---------------------------------------------------------------------------
@@ -61,18 +105,31 @@ export function handleReconcileHooks(args) {
     const isError = result.healthScore === 0 && !result.hooksInSync;
     return { content: [{ type: 'text', text }], isError };
 }
+export function handleReconcileHooksAsync(args) {
+    const result = reconcileHooks(args.projectPath);
+    if (!args.autoFix) {
+        const text = formatReconciliation(result);
+        const isError = result.healthScore === 0 && !result.hooksInSync;
+        return { content: [{ type: 'text', text }], isError };
+    }
+    const patch = patchHooks(result.missingHooks, args.projectPath);
+    const text = formatPatchResult(result, patch);
+    const isError = patch.healthScore === 0 && patch.patched.length === 0;
+    return { content: [{ type: 'text', text }], isError };
+}
 // ---------------------------------------------------------------------------
 // Registration
 // ---------------------------------------------------------------------------
 export function registerReconcileHooksTool(server) {
     server.registerTool('reconcile_hooks', {
-        description: 'Detect drift between the project CI/quality pipeline and its git hooks. Checks whether hooks enforce TypeScript, ESLint, tests, commitlint, and Prettier based on what the project has installed. Returns a health score (0-100) and lists missing or outdated steps.',
+        description: 'Detect drift between the project CI/quality pipeline and its git hooks. Checks whether hooks enforce TypeScript, ESLint, tests, commitlint, and Prettier based on what the project has installed. Returns a health score (0-100) and lists missing or outdated steps. ' +
+            'With autoFix:true, automatically patches husky hook files to add missing quality checks (idempotent).',
         inputSchema: reconcileHooksSchema,
         annotations: {
-            readOnlyHint: true,
+            readOnlyHint: false,
             destructiveHint: false,
             title: 'Reconcile Hooks',
         },
-    }, safeTracked('reconcile_hooks', (args) => Promise.resolve(handleReconcileHooks(args))));
+    }, safeTracked('reconcile_hooks', (args) => Promise.resolve(handleReconcileHooksAsync(args))));
 }
 //# sourceMappingURL=reconcile-hooks.js.map

package/dist/tools/reconcile-hooks.js.map

@@ -1 +1 @@
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package/dist/tools/reconcile-skills.d.ts

@@ -3,6 +3,7 @@ import type { ToolResult } from '../types/index.js';
 export declare function handleReconcileSkills(args: {
     projectId: string;
     projectPath: string;
+    autoFix?: boolean;
 }): Promise<ToolResult>;
 export declare function registerReconcileSkillsTool(server: McpServer): void;
 //# sourceMappingURL=reconcile-skills.d.ts.map

package/dist/tools/reconcile-skills.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"reconcile-skills.d.ts","sourceRoot":"","sources":["../../src/tools/reconcile-skills.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAMzE,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAMpD,wBAAsB,qBAAqB,CAAC,IAAI,EAAE;IAChD,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB,GAAG,OAAO,CAAC,UAAU,CAAC,CAWtB;AAmGD,wBAAgB,2BAA2B,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAyBnE"}

package/dist/tools/reconcile-skills.js

@@ -1,9 +1,8 @@
 // tools/reconcile-skills.ts — SPEC-189: reconcile_skills MCP tool registration
-// Read-only analysis: detects new skills needed and stale skills for the current stack.
-// Does NOT install or remove anything — it reports what needs attention.
+// SPEC-395: adds autoFix:boolean to auto-install missing, remove stale, repair paths.
 import { safeTracked } from './safe-handler.js';
 import { ReconcileSkillsInputSchema } from './schemas/reconcile-skills-schemas.js';
-import { reconcileSkills } from '../engine/skills-reconciler.js';
+import { reconcileSkills, autoFixSkills } from '../engine/skills-reconciler.js';
 import { sanitizePath } from './sanitize-path.js';
 import { knowledgeStore } from '../storage/index.js';
 // ---------------------------------------------------------------------------
@@ -12,7 +11,17 @@ import { knowledgeStore } from '../storage/index.js';
 export async function handleReconcileSkills(args) {
     const projectPath = sanitizePath(args.projectPath);
     const knowledge = await knowledgeStore.getKnowledge(args.projectId);
-    const result = await reconcileSkills(projectPath, knowledge);
+    const reconciliation = await reconcileSkills(projectPath, knowledge);
+    if (args.autoFix === true) {
+        const fixResult = await autoFixSkills(reconciliation, projectPath);
+        return buildAutoFixReport(fixResult);
+    }
+    return buildReadOnlyReport(reconciliation);
+}
+// ---------------------------------------------------------------------------
+// Report builders
+// ---------------------------------------------------------------------------
+function buildReadOnlyReport(result) {
     const lines = [];
     lines.push(`## Skills Reconciliation Report`);
     lines.push(`**Health score**: ${result.healthScore}/100`);
@@ -43,9 +52,46 @@ export async function handleReconcileSkills(args) {
     else {
         lines.push('No stale skills detected.');
     }
-    return {
-        content: [{ type: 'text', text: lines.join('\n') }],
-    };
+    return { content: [{ type: 'text', text: lines.join('\n') }] };
+}
+function buildAutoFixReport(fix) {
+    const lines = [];
+    lines.push('## Skills Auto-Fix Report');
+    lines.push(`**Health score after fix**: ${fix.healthScore}/100`);
+    lines.push('');
+    if (fix.installed.length > 0) {
+        lines.push(`### Installed (${fix.installed.length})`);
+        for (const name of fix.installed) {
+            lines.push(`- \`${name}\``);
+        }
+        lines.push('');
+    }
+    else {
+        lines.push('No missing skills to install.');
+        lines.push('');
+    }
+    if (fix.removed.length > 0) {
+        lines.push(`### Removed (${fix.removed.length})`);
+        for (const name of fix.removed) {
+            lines.push(`- \`${name}\``);
+        }
+        lines.push('');
+    }
+    else {
+        lines.push('No stale skills to remove.');
+        lines.push('');
+    }
+    if (fix.pathsFixed.length > 0) {
+        lines.push(`### Paths corrected (${fix.pathsFixed.length})`);
+        for (const name of fix.pathsFixed) {
+            lines.push(`- \`${name}\``);
+        }
+        lines.push('');
+    }
+    else {
+        lines.push('No corrupt manifest paths detected.');
+    }
+    return { content: [{ type: 'text', text: lines.join('\n') }] };
 }
 // ---------------------------------------------------------------------------
 // Registration
@@ -56,14 +102,16 @@ export function registerReconcileSkillsTool(server) {
             'Detects skills that are recommended for the stack but not yet installed (newSkillsDetected) ' +
             'and skills installed for technologies no longer in use (staleSkills). ' +
             'Returns a health score (0–100) indicating how well skills match the current stack. ' +
-            'Read-only — does not install or remove anything.',
+            'Pass autoFix:true to automatically install missing skills, remove stale skills, ' +
+            'and repair corrupt manifest paths (mutates .claude/skills/).',
         inputSchema: {
             projectId: ReconcileSkillsInputSchema.shape.projectId,
             projectPath: ReconcileSkillsInputSchema.shape.projectPath,
+            autoFix: ReconcileSkillsInputSchema.shape.autoFix,
         },
         annotations: {
             title: 'Reconcile Skills',
-            readOnlyHint: true,
+            readOnlyHint: false,
         },
     }, safeTracked('reconcile_skills', async (args) => handleReconcileSkills(args)));
 }

package/dist/tools/reconcile-skills.js.map

@@ -1 +1 @@
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+{"version":3,"file":"reconcile-skills.js","sourceRoot":"","sources":["../../src/tools/reconcile-skills.ts"],"names":[],"mappings":"AAAA,+EAA+E;AAC/E,sFAAsF;AAGtF,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,OAAO,EAAE,0BAA0B,EAAE,MAAM,uCAAuC,CAAC;AACnF,OAAO,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,gCAAgC,CAAC;AAChF,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAGrD,8EAA8E;AAC9E,UAAU;AACV,8EAA8E;AAE9E,MAAM,CAAC,KAAK,UAAU,qBAAqB,CAAC,IAI3C;IACC,MAAM,WAAW,GAAG,YAAY,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;IACnD,MAAM,SAAS,GAAG,MAAM,cAAc,CAAC,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;IACpE,MAAM,cAAc,GAAG,MAAM,eAAe,CAAC,WAAW,EAAE,SAAS,CAAC,CAAC;IAErE,IAAI,IAAI,CAAC,OAAO,KAAK,IAAI,EAAE,CAAC;QAC1B,MAAM,SAAS,GAAG,MAAM,aAAa,CAAC,cAAc,EAAE,WAAW,CAAC,CAAC;QACnE,OAAO,kBAAkB,CAAC,SAAS,CAAC,CAAC;IACvC,CAAC;IAED,OAAO,mBAAmB,CAAC,cAAc,CAAC,CAAC;AAC7C,CAAC;AAED,8EAA8E;AAC9E,kBAAkB;AAClB,8EAA8E;AAE9E,SAAS,mBAAmB,CAAC,MAK5B;IACC,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,KAAK,CAAC,IAAI,CAAC,iCAAiC,CAAC,CAAC;IAC9C,KAAK,CAAC,IAAI,CAAC,qBAAqB,MAAM,CAAC,WAAW,MAAM,CAAC,CAAC;IAC1D,KAAK,CAAC,IAAI,CAAC,gBAAgB,MAAM,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;IACjE,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEf,IAAI,MAAM,CAAC,iBAAiB,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACxC,KAAK,CAAC,IAAI,CAAC,4BAA4B,MAAM,CAAC,iBAAiB,CAAC,MAAM,GAAG,CAAC,CAAC;QAC3E,KAAK,CAAC,IAAI,CAAC,4EAA4E,CAAC,CAAC;QACzF,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,iBAAiB,EAAE,CAAC;YAC5C,KAAK,CAAC,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,CAAC;QAC9B,CAAC;QACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACf,KAAK,CAAC,IAAI,CAAC,gFAAgF,CAAC,CAAC;IAC/F,CAAC;SAAM,CAAC;QACN,KAAK,CAAC,IAAI,CAAC,uCAAuC,CAAC,CAAC;IACtD,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEf,IAAI,MAAM,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAClC,KAAK,CAAC,IAAI,CAAC,qBAAqB,MAAM,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC;QAC9D,KAAK,CAAC,IAAI,CAAC,8EAA8E,CAAC,CAAC;QAC3F,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,WAAW,EAAE,CAAC;YACtC,KAAK,CAAC,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,CAAC;QAC9B,CAAC;QACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACf,KAAK,CAAC,IAAI,CAAC,6EAA6E,CAAC,CAAC;IAC5F,CAAC;SAAM,CAAC;QACN,KAAK,CAAC,IAAI,CAAC,2BAA2B,CAAC,CAAC;IAC1C,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC;AACjE,CAAC;AAED,SAAS,kBAAkB,CAAC,GAK3B;IACC,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,KAAK,CAAC,IAAI,CAAC,2BAA2B,CAAC,CAAC;IACxC,KAAK,CAAC,IAAI,CAAC,+BAA+B,GAAG,CAAC,WAAW,MAAM,CAAC,CAAC;IACjE,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEf,IAAI,GAAG,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC7B,KAAK,CAAC,IAAI,CAAC,kBAAkB,GAAG,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC;QACtD,KAAK,MAAM,IAAI,IAAI,GAAG,CAAC,SAAS,EAAE,CAAC;YACjC,KAAK,CAAC,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,CAAC;QAC9B,CAAC;QACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;SAAM,CAAC;QACN,KAAK,CAAC,IAAI,CAAC,+BAA+B,CAAC,CAAC;QAC5C,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;IAED,IAAI,GAAG,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3B,KAAK,CAAC,IAAI,CAAC,gBAAgB,GAAG,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC;QAClD,KAAK,MAAM,IAAI,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;YAC/B,KAAK,CAAC,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,CAAC;QAC9B,CAAC;QACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;SAAM,CAAC;QACN,KAAK,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC;QACzC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;IAED,IAAI,GAAG,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC9B,KAAK,CAAC,IAAI,CAAC,wBAAwB,GAAG,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,CAAC;QAC7D,KAAK,MAAM,IAAI,IAAI,GAAG,CAAC,UAAU,EAAE,CAAC;YAClC,KAAK,CAAC,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,CAAC;QAC9B,CAAC;QACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;SAAM,CAAC;QACN,KAAK,CAAC,IAAI,CAAC,qCAAqC,CAAC,CAAC;IACpD,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC;AACjE,CAAC;AAED,8EAA8E;AAC9E,eAAe;AACf,8EAA8E;AAE9E,MAAM,UAAU,2BAA2B,CAAC,MAAiB;IAC3D,MAAM,CAAC,YAAY,CACjB,kBAAkB,EAClB;QACE,WAAW,EACT,4FAA4F;YAC5F,8FAA8F;YAC9F,wEAAwE;YACxE,qFAAqF;YACrF,kFAAkF;YAClF,8DAA8D;QAChE,WAAW,EAAE;YACX,SAAS,EAAE,0BAA0B,CAAC,KAAK,CAAC,SAAS;YACrD,WAAW,EAAE,0BAA0B,CAAC,KAAK,CAAC,WAAW;YACzD,OAAO,EAAE,0BAA0B,CAAC,KAAK,CAAC,OAAO;SAClD;QACD,WAAW,EAAE;YACX,KAAK,EAAE,kBAAkB;YACzB,YAAY,EAAE,KAAK;SACpB;KACF,EACD,WAAW,CAAC,kBAAkB,EAAE,KAAK,EAAE,IAAI,EAAE,EAAE,CAC7C,qBAAqB,CAAC,IAAqE,CAAC,CAC7F,CACF,CAAC;AACJ,CAAC"}

package/dist/tools/schemas/reconcile-skills-schemas.d.ts

@@ -3,5 +3,6 @@ import { z } from 'zod';
 export declare const ReconcileSkillsInputSchema: z.ZodObject<{
     projectId: z.ZodString;
     projectPath: z.ZodString;
+    autoFix: z.ZodOptional<z.ZodBoolean>;
 }, z.core.$strip>;
 //# sourceMappingURL=reconcile-skills-schemas.d.ts.map

package/dist/tools/schemas/reconcile-skills-schemas.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"reconcile-skills-schemas.d.ts","sourceRoot":"","sources":["../../../src/tools/schemas/reconcile-skills-schemas.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,kDAAkD;AAClD,eAAO,MAAM,0BAA0B;;;iBAiBrC,CAAC"}
+{"version":3,"file":"reconcile-skills-schemas.d.ts","sourceRoot":"","sources":["../../../src/tools/schemas/reconcile-skills-schemas.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,kDAAkD;AAClD,eAAO,MAAM,0BAA0B;;;;iBAwBrC,CAAC"}

package/dist/tools/schemas/reconcile-skills-schemas.js

@@ -14,5 +14,10 @@ export const ReconcileSkillsInputSchema = z.object({
         .max(2000)
         .describe('Absolute path to the project root directory (e.g. "/home/user/my-project"). ' +
         'Used to scan the .claude/skills/ directory for installed skills.'),
+    autoFix: z
+        .boolean()
+        .optional()
+        .describe('When true, automatically installs missing skills, removes stale skills from disk ' +
+        'and manifest, and corrects corrupt manifest paths. Default: false (read-only analysis).'),
 });
 //# sourceMappingURL=reconcile-skills-schemas.js.map

package/dist/tools/schemas/reconcile-skills-schemas.js.map

@@ -1 +1 @@
-{"version":3,"file":"reconcile-skills-schemas.js","sourceRoot":"","sources":["../../../src/tools/schemas/reconcile-skills-schemas.ts"],"names":[],"mappings":"AAAA,uFAAuF;AAEvF,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,kDAAkD;AAClD,MAAM,CAAC,MAAM,0BAA0B,GAAG,CAAC,CAAC,MAAM,CAAC;IACjD,SAAS,EAAE,CAAC;SACT,MAAM,EAAE;SACR,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,GAAG,CAAC;SACR,QAAQ,CACP,yEAAyE;QACvE,uDAAuD,CAC1D;IACH,WAAW,EAAE,CAAC;SACX,MAAM,EAAE;SACR,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,IAAI,CAAC;SACT,QAAQ,CACP,8EAA8E;QAC5E,kEAAkE,CACrE;CACJ,CAAC,CAAC"}
+{"version":3,"file":"reconcile-skills-schemas.js","sourceRoot":"","sources":["../../../src/tools/schemas/reconcile-skills-schemas.ts"],"names":[],"mappings":"AAAA,uFAAuF;AAEvF,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,kDAAkD;AAClD,MAAM,CAAC,MAAM,0BAA0B,GAAG,CAAC,CAAC,MAAM,CAAC;IACjD,SAAS,EAAE,CAAC;SACT,MAAM,EAAE;SACR,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,GAAG,CAAC;SACR,QAAQ,CACP,yEAAyE;QACvE,uDAAuD,CAC1D;IACH,WAAW,EAAE,CAAC;SACX,MAAM,EAAE;SACR,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,IAAI,CAAC;SACT,QAAQ,CACP,8EAA8E;QAC5E,kEAAkE,CACrE;IACH,OAAO,EAAE,CAAC;SACP,OAAO,EAAE;SACT,QAAQ,EAAE;SACV,QAAQ,CACP,mFAAmF;QACjF,yFAAyF,CAC5F;CACJ,CAAC,CAAC"}

package/dist/types/conventions.d.ts

@@ -52,6 +52,17 @@ export interface SkillsReconciliation {
     updatedSkills: string[];
     healthScore: number;
 }
+/** Result returned when autoFix:true is passed to reconcile_skills (SPEC-395). */
+export interface SkillsAutoFixResult {
+    /** Skills successfully installed during the auto-fix run. */
+    installed: string[];
+    /** Skills removed from disk and manifest during the auto-fix run. */
+    removed: string[];
+    /** Manifest entries whose paths were corrected during the auto-fix run. */
+    pathsFixed: string[];
+    /** Health score after all fixes were applied (0–100). */
+    healthScore: number;
+}
 export interface ComplianceGateResult {
     conventionWarnings: string[];
     constitutionWarnings: {
@@ -83,6 +94,24 @@ export interface HooksReconciliation {
     outdatedHooks: string[];
     healthScore: number;
 }
+/** Internal candidate for patching a single hook step. */
+export interface PatchCandidate {
+    hook: string;
+    line: string;
+    description: string;
+}
+/** Result of auto-patching husky hook files with missing quality checks. */
+export interface HooksPatchResult {
+    /** Checks that were successfully appended to hook files. */
+    patched: {
+        hook: string;
+        added: string;
+    }[];
+    /** Checks skipped because they were already present or covered by lint-staged. */
+    skipped: string[];
+    /** Updated health score after patching (0–100). */
+    healthScore: number;
+}
 export interface ProjectCapabilities {
     hasTypeScript: boolean;
     hasEsLint: boolean;

package/dist/types/conventions.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@planu/cli",
-  "version": "1.5.0",
+  "version": "1.6.0",
   "description": "Planu — MCP Server for Spec Driven Development. Manages specs, estimations, reverse engineering, and auto-learning across any language/framework.",
   "type": "module",
   "main": "dist/index.js",