@pixelzx/genesis 2026.6.13-beta.3 → 2026.6.13

package/dist/prepare.runtime-BIEQIV8L.js

@@ -0,0 +1,815 @@
+import { c as normalizeOptionalString, s as normalizeOptionalLowercaseString } from "./string-coerce-DPP_aYVc.js";
+import { r as normalizeProviderId } from "./provider-id--dmcBtHB.js";
+import { i as applyMergePatch } from "./schema-validator-BRqYaMiV.js";
+import { m as resolveSessionAgentIds } from "./agent-scope-Duyu_T59.js";
+import { D as readClaudeCliCredentialsCached, O as readCodexCliCredentialsCached, s as loadAuthProfileStoreForRuntime } from "./store-CSG8Jr-5.js";
+import { n as mergePluginTextTransforms, t as applyPluginTextReplacements } from "./plugin-text-transforms-DiJR2l88.js";
+import { n as resolvePluginSetupCliBackend } from "./setup-registry-xQXt2XoM.js";
+import { r as loadEnabledBundleMcpConfig, t as extractMcpServerMap } from "./bundle-mcp-3H-qJsum.js";
+import { t as getGlobalHookRunner } from "./hook-runner-global-KWJ-vVaB.js";
+import { Y as resolveRuntimeTextTransforms } from "./provider-runtime-BlF7wSvS.js";
+import { t as resolveGenesisAgentDir } from "./agent-paths-B6ef9_Hd.js";
+import { n as resolveRuntimeCliBackends } from "./model-selection-cli-DaiJ2BMH.js";
+import "./model-selection-Le6XU3cD.js";
+import { i as buildBootstrapTruncationReportMeta, n as buildBootstrapInjectionStats, r as buildBootstrapPromptWarning, t as analyzeBootstrapBudget } from "./bootstrap-budget-AwPM5SCG.js";
+import { i as resolveBootstrapContextForRun, r as makeBootstrapWarn } from "./bootstrap-files-Cs14P9iA.js";
+import { t as resolveHeartbeatPromptForSystemPrompt } from "./heartbeat-system-prompt-D_M4Nkek.js";
+import { h as resolveBootstrapTotalMaxChars, m as resolveBootstrapPromptTruncationWarningMode, p as resolveBootstrapMaxChars } from "./pi-embedded-helpers-DGOg4B7z.js";
+import { n as normalizeConfiguredMcpServers } from "./mcp-config-SY5hxaKj.js";
+import { s as resolveSkillsPromptForRun } from "./workspace-D53YVcOL.js";
+import "./skills-vs6LL8lJ.js";
+import { t as resolveSystemPromptOverride } from "./system-prompt-override-CN-YBXQA.js";
+import { t as buildSystemPromptReport } from "./system-prompt-report-Od6CKNNx.js";
+import { n as composeSystemPromptWithHookContext } from "./attempt.thread-helpers-vnn3lVdg.js";
+import { c as resolvePromptBuildHookResult, s as resolveAttemptPrependSystemContext } from "./attempt.prompt-helpers-z-6VGwRW.js";
+import { n as resolveRunWorkspaceDir, t as redactRunIdentifier } from "./workspace-run-CQ9bvprq.js";
+import { a as hashCliSessionText, o as resolveCliSessionReuse } from "./cli-session-DuAWtTPW.js";
+import { t as loadCliSessionHistoryMessages } from "./session-history-BdEh1c0M.js";
+import { g as cliBackendLog, i as normalizeCliModel, n as buildSystemPrompt, p as serializeTomlInlineValue } from "./helpers-DEG_RuMc.js";
+import { i as getActiveMcpLoopbackRuntime, n as ensureMcpLoopbackServer, r as createMcpLoopbackServerConfig } from "./mcp-http-C8sBBMH1.js";
+import path from "node:path";
+import os from "node:os";
+import fs from "node:fs/promises";
+import crypto from "node:crypto";
+const cliAuthEpochDeps = {
+	readClaudeCliCredentialsCached,
+	readCodexCliCredentialsCached,
+	loadAuthProfileStoreForRuntime
+};
+function hashCliAuthEpochPart(value) {
+	return crypto.createHash("sha256").update(value).digest("hex");
+}
+function encodeUnknown(value) {
+	return JSON.stringify(value ?? null);
+}
+function encodeOAuthIdentity(credential) {
+	return JSON.stringify([
+		"oauth",
+		credential.provider,
+		credential.clientId ?? null,
+		credential.email ?? null,
+		credential.enterpriseUrl ?? null,
+		credential.projectId ?? null,
+		credential.accountId ?? null
+	]);
+}
+function encodeClaudeCredential(credential) {
+	if (credential.type === "oauth") return encodeOAuthIdentity(credential);
+	return JSON.stringify([
+		"token",
+		credential.provider,
+		credential.token
+	]);
+}
+function encodeCodexCredential(credential) {
+	return encodeOAuthIdentity(credential);
+}
+function encodeAuthProfileCredential(credential) {
+	switch (credential.type) {
+		case "api_key": return JSON.stringify([
+			"api_key",
+			credential.provider,
+			credential.key ?? null,
+			encodeUnknown(credential.keyRef),
+			credential.email ?? null,
+			credential.displayName ?? null,
+			encodeUnknown(credential.metadata)
+		]);
+		case "token": return JSON.stringify([
+			"token",
+			credential.provider,
+			credential.token ?? null,
+			encodeUnknown(credential.tokenRef),
+			credential.email ?? null,
+			credential.displayName ?? null
+		]);
+		case "oauth": return encodeOAuthIdentity(credential);
+	}
+	throw new Error("Unsupported auth profile credential type");
+}
+function getLocalCliCredentialFingerprint(provider) {
+	switch (provider) {
+		case "claude-cli": {
+			const credential = cliAuthEpochDeps.readClaudeCliCredentialsCached({
+				ttlMs: 5e3,
+				allowKeychainPrompt: false
+			});
+			return credential ? hashCliAuthEpochPart(encodeClaudeCredential(credential)) : void 0;
+		}
+		case "codex-cli": {
+			const credential = cliAuthEpochDeps.readCodexCliCredentialsCached({ ttlMs: 5e3 });
+			return credential ? hashCliAuthEpochPart(encodeCodexCredential(credential)) : void 0;
+		}
+		default: return;
+	}
+}
+function getAuthProfileCredential(store, authProfileId) {
+	if (!authProfileId) return;
+	return store.profiles[authProfileId];
+}
+async function resolveCliAuthEpoch(params) {
+	const provider = params.provider.trim();
+	const authProfileId = normalizeOptionalString(params.authProfileId);
+	const parts = [];
+	if (params.skipLocalCredential !== true) {
+		const localFingerprint = getLocalCliCredentialFingerprint(provider);
+		if (localFingerprint) parts.push(`local:${provider}:${localFingerprint}`);
+	}
+	if (authProfileId) {
+		const credential = getAuthProfileCredential(cliAuthEpochDeps.loadAuthProfileStoreForRuntime(void 0, {
+			readOnly: true,
+			allowKeychainPrompt: false
+		}), authProfileId);
+		if (credential) parts.push(`profile:${authProfileId}:${hashCliAuthEpochPart(encodeAuthProfileCredential(credential))}`);
+	}
+	if (parts.length === 0) return;
+	return hashCliAuthEpochPart(parts.join("\n"));
+}
+let cliBackendsDeps = {
+	resolvePluginSetupCliBackend,
+	resolveRuntimeCliBackends
+};
+const FALLBACK_CLI_BACKEND_POLICIES = {};
+function normalizeBundleMcpMode(mode, enabled) {
+	if (!enabled) return;
+	return mode ?? "claude-config-file";
+}
+function resolveSetupCliBackendPolicy(provider) {
+	const entry = cliBackendsDeps.resolvePluginSetupCliBackend({ backend: provider });
+	if (!entry) return;
+	return {
+		bundleMcp: entry.backend.bundleMcp === true,
+		bundleMcpMode: normalizeBundleMcpMode(entry.backend.bundleMcpMode, entry.backend.bundleMcp === true),
+		baseConfig: entry.backend.config,
+		normalizeConfig: entry.backend.normalizeConfig,
+		transformSystemPrompt: entry.backend.transformSystemPrompt,
+		textTransforms: entry.backend.textTransforms,
+		defaultAuthProfileId: entry.backend.defaultAuthProfileId,
+		authEpochMode: entry.backend.authEpochMode,
+		prepareExecution: entry.backend.prepareExecution
+	};
+}
+function resolveFallbackCliBackendPolicy(provider) {
+	return FALLBACK_CLI_BACKEND_POLICIES[provider] ?? resolveSetupCliBackendPolicy(provider);
+}
+function normalizeBackendKey(key) {
+	return normalizeProviderId(key);
+}
+function pickBackendConfig(config, normalizedId) {
+	const directKey = Object.keys(config).find((key) => normalizeOptionalLowercaseString(key) === normalizedId);
+	if (directKey) return config[directKey];
+	for (const [key, entry] of Object.entries(config)) if (normalizeBackendKey(key) === normalizedId) return entry;
+}
+function resolveRegisteredBackend(provider) {
+	const normalized = normalizeBackendKey(provider);
+	return cliBackendsDeps.resolveRuntimeCliBackends().find((entry) => normalizeBackendKey(entry.id) === normalized);
+}
+function mergeBackendConfig(base, override) {
+	if (!override) return { ...base };
+	const baseFresh = base.reliability?.watchdog?.fresh ?? {};
+	const baseResume = base.reliability?.watchdog?.resume ?? {};
+	const overrideFresh = override.reliability?.watchdog?.fresh ?? {};
+	const overrideResume = override.reliability?.watchdog?.resume ?? {};
+	return {
+		...base,
+		...override,
+		args: override.args ?? base.args,
+		env: {
+			...base.env,
+			...override.env
+		},
+		modelAliases: {
+			...base.modelAliases,
+			...override.modelAliases
+		},
+		clearEnv: Array.from(new Set([...base.clearEnv ?? [], ...override.clearEnv ?? []])),
+		sessionIdFields: override.sessionIdFields ?? base.sessionIdFields,
+		sessionArgs: override.sessionArgs ?? base.sessionArgs,
+		resumeArgs: override.resumeArgs ?? base.resumeArgs,
+		reliability: {
+			...base.reliability,
+			...override.reliability,
+			watchdog: {
+				...base.reliability?.watchdog,
+				...override.reliability?.watchdog,
+				fresh: {
+					...baseFresh,
+					...overrideFresh
+				},
+				resume: {
+					...baseResume,
+					...overrideResume
+				}
+			}
+		}
+	};
+}
+function resolveCliBackendConfig(provider, cfg, options = {}) {
+	const normalized = normalizeBackendKey(provider);
+	const normalizeContext = {
+		backendId: normalized,
+		...options.agentId ? { agentId: options.agentId } : {},
+		...cfg ? { config: cfg } : {}
+	};
+	const runtimeTextTransforms = resolveRuntimeTextTransforms();
+	const override = pickBackendConfig(cfg?.agents?.defaults?.cliBackends ?? {}, normalized);
+	const registered = resolveRegisteredBackend(normalized);
+	if (registered) {
+		const merged = mergeBackendConfig(registered.config, override);
+		const config = registered.normalizeConfig ? registered.normalizeConfig(merged, normalizeContext) : merged;
+		const command = config.command?.trim();
+		if (!command) return null;
+		return {
+			id: normalized,
+			config: {
+				...config,
+				command
+			},
+			bundleMcp: registered.bundleMcp === true,
+			bundleMcpMode: normalizeBundleMcpMode(registered.bundleMcpMode, registered.bundleMcp === true),
+			pluginId: registered.pluginId,
+			transformSystemPrompt: registered.transformSystemPrompt,
+			textTransforms: mergePluginTextTransforms(runtimeTextTransforms, registered.textTransforms),
+			defaultAuthProfileId: registered.defaultAuthProfileId,
+			authEpochMode: registered.authEpochMode,
+			prepareExecution: registered.prepareExecution
+		};
+	}
+	const fallbackPolicy = resolveFallbackCliBackendPolicy(normalized);
+	if (!override) {
+		if (!fallbackPolicy?.baseConfig) return null;
+		const baseConfig = fallbackPolicy.normalizeConfig ? fallbackPolicy.normalizeConfig(fallbackPolicy.baseConfig, normalizeContext) : fallbackPolicy.baseConfig;
+		const command = baseConfig.command?.trim();
+		if (!command) return null;
+		return {
+			id: normalized,
+			config: {
+				...baseConfig,
+				command
+			},
+			bundleMcp: fallbackPolicy.bundleMcp,
+			bundleMcpMode: fallbackPolicy.bundleMcpMode,
+			transformSystemPrompt: fallbackPolicy.transformSystemPrompt,
+			textTransforms: mergePluginTextTransforms(runtimeTextTransforms, fallbackPolicy.textTransforms),
+			defaultAuthProfileId: fallbackPolicy.defaultAuthProfileId,
+			authEpochMode: fallbackPolicy.authEpochMode,
+			prepareExecution: fallbackPolicy.prepareExecution
+		};
+	}
+	const mergedFallback = fallbackPolicy?.baseConfig ? mergeBackendConfig(fallbackPolicy.baseConfig, override) : override;
+	const config = fallbackPolicy?.normalizeConfig ? fallbackPolicy.normalizeConfig(mergedFallback, normalizeContext) : mergedFallback;
+	const command = config.command?.trim();
+	if (!command) return null;
+	return {
+		id: normalized,
+		config: {
+			...config,
+			command
+		},
+		bundleMcp: fallbackPolicy?.bundleMcp === true,
+		bundleMcpMode: fallbackPolicy?.bundleMcpMode,
+		transformSystemPrompt: fallbackPolicy?.transformSystemPrompt,
+		textTransforms: mergePluginTextTransforms(runtimeTextTransforms, fallbackPolicy?.textTransforms),
+		defaultAuthProfileId: fallbackPolicy?.defaultAuthProfileId,
+		authEpochMode: fallbackPolicy?.authEpochMode,
+		prepareExecution: fallbackPolicy?.prepareExecution
+	};
+}
+//#endregion
+//#region src/agents/cli-runner/bundle-mcp.ts
+function resolveBundleMcpMode(mode) {
+	return mode ?? "claude-config-file";
+}
+async function readExternalMcpConfig(configPath) {
+	try {
+		return { mcpServers: extractMcpServerMap(JSON.parse(await fs.readFile(configPath, "utf-8"))) };
+	} catch {
+		return { mcpServers: {} };
+	}
+}
+async function readJsonObject(filePath) {
+	try {
+		const raw = JSON.parse(await fs.readFile(filePath, "utf-8"));
+		return raw && typeof raw === "object" && !Array.isArray(raw) ? { ...raw } : {};
+	} catch {
+		return {};
+	}
+}
+function findMcpConfigPath(args) {
+	if (!args?.length) return;
+	for (let i = 0; i < args.length; i += 1) {
+		const arg = args[i] ?? "";
+		if (arg === "--mcp-config") return normalizeOptionalString(args[i + 1]);
+		if (arg.startsWith("--mcp-config=")) return normalizeOptionalString(arg.slice(13));
+	}
+}
+function injectClaudeMcpConfigArgs(args, mcpConfigPath) {
+	const next = [];
+	for (let i = 0; i < (args?.length ?? 0); i += 1) {
+		const arg = args?.[i] ?? "";
+		if (arg === "--strict-mcp-config") continue;
+		if (arg === "--mcp-config") {
+			i += 1;
+			continue;
+		}
+		if (arg.startsWith("--mcp-config=")) continue;
+		next.push(arg);
+	}
+	next.push("--strict-mcp-config", "--mcp-config", mcpConfigPath);
+	return next;
+}
+function isRecord(value) {
+	return typeof value === "object" && value !== null && !Array.isArray(value);
+}
+function normalizeStringArray(value) {
+	return Array.isArray(value) && value.every((entry) => typeof entry === "string") ? [...value] : void 0;
+}
+function normalizeStringRecord(value) {
+	if (!isRecord(value)) return;
+	const entries = Object.entries(value).filter((entry) => {
+		return typeof entry[1] === "string";
+	});
+	return entries.length > 0 ? Object.fromEntries(entries) : void 0;
+}
+function decodeHeaderEnvPlaceholder(value) {
+	const bearerMatch = /^Bearer \${([A-Z0-9_]+)}$/.exec(value);
+	if (bearerMatch) return {
+		envVar: bearerMatch[1],
+		bearer: true
+	};
+	const envMatch = /^\${([A-Z0-9_]+)}$/.exec(value);
+	if (envMatch) return {
+		envVar: envMatch[1],
+		bearer: false
+	};
+	return null;
+}
+function applyCommonServerConfig(next, server) {
+	if (typeof server.command === "string") next.command = server.command;
+	const args = normalizeStringArray(server.args);
+	if (args) next.args = args;
+	const env = normalizeStringRecord(server.env);
+	if (env) next.env = env;
+	if (typeof server.cwd === "string") next.cwd = server.cwd;
+	if (typeof server.url === "string") next.url = server.url;
+}
+function isGenesisLoopbackMcpServer(name, server) {
+	return name === "genesis" && typeof server.url === "string" && /^https?:\/\/(?:127\.0\.0\.1|localhost):\d+\/mcp(?:[?#].*)?$/.test(server.url);
+}
+function normalizeCodexServerConfig(name, server) {
+	const next = {};
+	applyCommonServerConfig(next, server);
+	if (isGenesisLoopbackMcpServer(name, server)) next.default_tools_approval_mode = "approve";
+	const httpHeaders = normalizeStringRecord(server.headers);
+	if (httpHeaders) {
+		const staticHeaders = {};
+		const envHeaders = {};
+		for (const [name, value] of Object.entries(httpHeaders)) {
+			const decoded = decodeHeaderEnvPlaceholder(value);
+			if (!decoded) {
+				staticHeaders[name] = value;
+				continue;
+			}
+			if (decoded.bearer && normalizeOptionalLowercaseString(name) === "authorization") {
+				next.bearer_token_env_var = decoded.envVar;
+				continue;
+			}
+			envHeaders[name] = decoded.envVar;
+		}
+		if (Object.keys(staticHeaders).length > 0) next.http_headers = staticHeaders;
+		if (Object.keys(envHeaders).length > 0) next.env_http_headers = envHeaders;
+	}
+	return next;
+}
+function resolveEnvPlaceholder(value, inheritedEnv) {
+	const decoded = decodeHeaderEnvPlaceholder(value);
+	if (!decoded) return value;
+	const resolved = inheritedEnv?.[decoded.envVar] ?? process.env[decoded.envVar] ?? "";
+	return decoded.bearer ? `Bearer ${resolved}` : resolved;
+}
+function normalizeGeminiServerConfig(server, inheritedEnv) {
+	const next = {};
+	applyCommonServerConfig(next, server);
+	if (typeof server.type === "string") next.type = server.type;
+	const headers = normalizeStringRecord(server.headers);
+	if (headers) next.headers = Object.fromEntries(Object.entries(headers).map(([name, value]) => [name, resolveEnvPlaceholder(value, inheritedEnv)]));
+	if (typeof server.trust === "boolean") next.trust = server.trust;
+	return next;
+}
+function injectCodexMcpConfigArgs(args, config) {
+	const overrides = serializeTomlInlineValue(Object.fromEntries(Object.entries(config.mcpServers).map(([name, server]) => [name, normalizeCodexServerConfig(name, server)])));
+	return [
+		...args ?? [],
+		"-c",
+		`mcp_servers=${overrides}`
+	];
+}
+async function writeGeminiSystemSettings(mergedConfig, inheritedEnv) {
+	const tempDir = await fs.mkdtemp(path.join(os.tmpdir(), "genesis-gemini-mcp-"));
+	const settingsPath = path.join(tempDir, "settings.json");
+	const existingSettingsPath = inheritedEnv?.GEMINI_CLI_SYSTEM_SETTINGS_PATH ?? process.env.GEMINI_CLI_SYSTEM_SETTINGS_PATH;
+	const base = typeof existingSettingsPath === "string" && existingSettingsPath.trim() ? await readJsonObject(existingSettingsPath) : {};
+	const normalizedConfig = { mcpServers: Object.fromEntries(Object.entries(mergedConfig.mcpServers).map(([name, server]) => [name, normalizeGeminiServerConfig(server, inheritedEnv)])) };
+	const settings = applyMergePatch(base, {
+		mcp: { allowed: Object.keys(normalizedConfig.mcpServers) },
+		mcpServers: normalizedConfig.mcpServers
+	});
+	await fs.writeFile(settingsPath, `${JSON.stringify(settings, null, 2)}\n`, "utf-8");
+	return {
+		env: {
+			...inheritedEnv,
+			GEMINI_CLI_SYSTEM_SETTINGS_PATH: settingsPath
+		},
+		cleanup: async () => {
+			await fs.rm(tempDir, {
+				recursive: true,
+				force: true
+			});
+		}
+	};
+}
+function sortJsonValue(value) {
+	if (Array.isArray(value)) return value.map((entry) => sortJsonValue(entry));
+	if (!isRecord(value)) return value;
+	return Object.fromEntries(Object.keys(value).toSorted().map((key) => [key, sortJsonValue(value[key])]));
+}
+function normalizeGenesisLoopbackUrl(value) {
+	const match = /^(http:\/\/(?:127\.0\.0\.1|localhost|\[::1\])):\d+(\/mcp)$/.exec(value.trim()) ?? void 0;
+	if (!match) return value;
+	return `${match[1]}:<genesis-loopback>${match[2]}`;
+}
+function canonicalizeBundleMcpConfigForResume(config) {
+	return { mcpServers: sortJsonValue(Object.fromEntries(Object.entries(config.mcpServers).map(([name, server]) => {
+		if (name !== "genesis" || typeof server.url !== "string") return [name, sortJsonValue(server)];
+		return [name, sortJsonValue({
+			...server,
+			url: normalizeGenesisLoopbackUrl(server.url)
+		})];
+	}))) };
+}
+async function prepareModeSpecificBundleMcpConfig(params) {
+	const serializedConfig = `${JSON.stringify(params.mergedConfig, null, 2)}\n`;
+	const mcpConfigHash = crypto.createHash("sha256").update(serializedConfig).digest("hex");
+	const serializedResumeConfig = `${JSON.stringify(canonicalizeBundleMcpConfigForResume(params.mergedConfig), null, 2)}\n`;
+	const mcpResumeHash = crypto.createHash("sha256").update(serializedResumeConfig).digest("hex");
+	if (params.mode === "codex-config-overrides") return {
+		backend: {
+			...params.backend,
+			args: injectCodexMcpConfigArgs(params.backend.args, params.mergedConfig),
+			resumeArgs: injectCodexMcpConfigArgs(params.backend.resumeArgs ?? params.backend.args ?? [], params.mergedConfig)
+		},
+		mcpConfigHash,
+		mcpResumeHash,
+		env: params.env
+	};
+	if (params.mode === "gemini-system-settings") {
+		const settings = await writeGeminiSystemSettings(params.mergedConfig, params.env);
+		return {
+			backend: params.backend,
+			mcpConfigHash,
+			mcpResumeHash,
+			env: settings.env,
+			cleanup: settings.cleanup
+		};
+	}
+	const tempDir = await fs.mkdtemp(path.join(os.tmpdir(), "genesis-cli-mcp-"));
+	const mcpConfigPath = path.join(tempDir, "mcp.json");
+	await fs.writeFile(mcpConfigPath, serializedConfig, "utf-8");
+	return {
+		backend: {
+			...params.backend,
+			args: injectClaudeMcpConfigArgs(params.backend.args, mcpConfigPath),
+			resumeArgs: injectClaudeMcpConfigArgs(params.backend.resumeArgs ?? params.backend.args ?? [], mcpConfigPath)
+		},
+		mcpConfigHash,
+		mcpResumeHash,
+		env: params.env,
+		cleanup: async () => {
+			await fs.rm(tempDir, {
+				recursive: true,
+				force: true
+			});
+		}
+	};
+}
+async function prepareCliBundleMcpConfig(params) {
+	if (!params.enabled) return {
+		backend: params.backend,
+		env: params.env
+	};
+	const mode = resolveBundleMcpMode(params.mode);
+	const existingMcpConfigPath = mode === "claude-config-file" ? findMcpConfigPath(params.backend.resumeArgs) ?? findMcpConfigPath(params.backend.args) : void 0;
+	let mergedConfig = { mcpServers: {} };
+	if (existingMcpConfigPath) {
+		const resolvedExistingPath = path.isAbsolute(existingMcpConfigPath) ? existingMcpConfigPath : path.resolve(params.workspaceDir, existingMcpConfigPath);
+		mergedConfig = applyMergePatch(mergedConfig, await readExternalMcpConfig(resolvedExistingPath));
+	}
+	const bundleConfig = loadEnabledBundleMcpConfig({
+		workspaceDir: params.workspaceDir,
+		cfg: params.config
+	});
+	for (const diagnostic of bundleConfig.diagnostics) params.warn?.(`bundle MCP skipped for ${diagnostic.pluginId}: ${diagnostic.message}`);
+	mergedConfig = applyMergePatch(mergedConfig, bundleConfig.config);
+	const configuredMcp = normalizeConfiguredMcpServers(params.config?.mcp?.servers);
+	if (Object.keys(configuredMcp).length > 0) {
+		const existingMcpServers = mergedConfig.mcpServers;
+		mergedConfig = {
+			...mergedConfig,
+			mcpServers: existingMcpServers ? {
+				...existingMcpServers,
+				...configuredMcp
+			} : configuredMcp
+		};
+	}
+	if (params.additionalConfig) mergedConfig = applyMergePatch(mergedConfig, params.additionalConfig);
+	return await prepareModeSpecificBundleMcpConfig({
+		mode,
+		backend: params.backend,
+		mergedConfig,
+		env: params.env
+	});
+}
+//#endregion
+//#region src/agents/cli-runner/prepare.ts
+const prepareDeps = {
+	makeBootstrapWarn,
+	resolveBootstrapContextForRun,
+	getActiveMcpLoopbackRuntime,
+	ensureMcpLoopbackServer,
+	createMcpLoopbackServerConfig,
+	resolveGenesisDocsPath: async (params) => (await import("./docs-path-CiGxBkIO.js")).resolveGenesisDocsPath(params)
+};
+function shouldSkipLocalCliCredentialEpoch(params) {
+	return Boolean(params.authEpochMode === "profile-only" && params.authProfileId && params.authCredential && params.preparedExecution);
+}
+async function prepareCliRunContext(params) {
+	const started = Date.now();
+	const workspaceResolution = resolveRunWorkspaceDir({
+		workspaceDir: params.workspaceDir,
+		sessionKey: params.sessionKey,
+		agentId: params.agentId,
+		config: params.config
+	});
+	const resolvedWorkspace = workspaceResolution.workspaceDir;
+	const redactedSessionId = redactRunIdentifier(params.sessionId);
+	const redactedSessionKey = redactRunIdentifier(params.sessionKey);
+	const redactedWorkspace = redactRunIdentifier(resolvedWorkspace);
+	if (workspaceResolution.usedFallback) cliBackendLog.warn(`[workspace-fallback] caller=runCliAgent reason=${workspaceResolution.fallbackReason} run=${params.runId} session=${redactedSessionId} sessionKey=${redactedSessionKey} agent=${workspaceResolution.agentId} workspace=${redactedWorkspace}`);
+	const workspaceDir = resolvedWorkspace;
+	const backendResolved = resolveCliBackendConfig(params.provider, params.config, { agentId: params.agentId });
+	if (!backendResolved) throw new Error(`Unknown CLI backend: ${params.provider}`);
+	const agentDir = resolveGenesisAgentDir();
+	const effectiveAuthProfileId = (params.authProfileId?.trim() || void 0) ?? backendResolved.defaultAuthProfileId?.trim() ?? void 0;
+	let authCredential;
+	if (effectiveAuthProfileId) authCredential = loadAuthProfileStoreForRuntime(agentDir, {
+		readOnly: true,
+		allowKeychainPrompt: false
+	}).profiles[effectiveAuthProfileId];
+	const extraSystemPrompt = params.extraSystemPrompt?.trim() ?? "";
+	const extraSystemPromptHash = params.extraSystemPromptStatic !== void 0 ? hashCliSessionText(params.extraSystemPromptStatic.trim() || void 0) : hashCliSessionText(extraSystemPrompt);
+	const modelId = (params.model ?? "default").trim() || "default";
+	const normalizedModel = normalizeCliModel(modelId, backendResolved.config);
+	const modelDisplay = `${params.provider}/${modelId}`;
+	const sessionLabel = params.sessionKey ?? params.sessionId;
+	const { bootstrapFiles, contextFiles } = await prepareDeps.resolveBootstrapContextForRun({
+		workspaceDir,
+		config: params.config,
+		sessionKey: params.sessionKey,
+		sessionId: params.sessionId,
+		warn: prepareDeps.makeBootstrapWarn({
+			sessionLabel,
+			workspaceDir,
+			warn: (message) => cliBackendLog.warn(message)
+		})
+	});
+	const bootstrapMaxChars = resolveBootstrapMaxChars(params.config);
+	const bootstrapTotalMaxChars = resolveBootstrapTotalMaxChars(params.config);
+	const bootstrapAnalysis = analyzeBootstrapBudget({
+		files: buildBootstrapInjectionStats({
+			bootstrapFiles,
+			injectedFiles: contextFiles
+		}),
+		bootstrapMaxChars,
+		bootstrapTotalMaxChars
+	});
+	const bootstrapPromptWarningMode = resolveBootstrapPromptTruncationWarningMode(params.config);
+	const bootstrapPromptWarning = buildBootstrapPromptWarning({
+		analysis: bootstrapAnalysis,
+		mode: bootstrapPromptWarningMode,
+		seenSignatures: params.bootstrapPromptWarningSignaturesSeen,
+		previousSignature: params.bootstrapPromptWarningSignature
+	});
+	const { defaultAgentId, sessionAgentId } = resolveSessionAgentIds({
+		sessionKey: params.sessionKey,
+		config: params.config,
+		agentId: params.agentId
+	});
+	let mcpLoopbackRuntime = backendResolved.bundleMcp ? prepareDeps.getActiveMcpLoopbackRuntime() : void 0;
+	if (backendResolved.bundleMcp && !mcpLoopbackRuntime) {
+		try {
+			await prepareDeps.ensureMcpLoopbackServer();
+		} catch (error) {
+			cliBackendLog.warn(`mcp loopback server failed to start: ${String(error)}`);
+		}
+		mcpLoopbackRuntime = prepareDeps.getActiveMcpLoopbackRuntime();
+	}
+	const preparedBackend = await prepareCliBundleMcpConfig({
+		enabled: backendResolved.bundleMcp,
+		mode: backendResolved.bundleMcpMode,
+		backend: backendResolved.config,
+		workspaceDir,
+		config: params.config,
+		additionalConfig: mcpLoopbackRuntime ? prepareDeps.createMcpLoopbackServerConfig(mcpLoopbackRuntime.port) : void 0,
+		env: mcpLoopbackRuntime ? {
+			GENESIS_MCP_TOKEN: params.senderIsOwner === true ? mcpLoopbackRuntime.ownerToken : mcpLoopbackRuntime.nonOwnerToken,
+			GENESIS_MCP_AGENT_ID: sessionAgentId ?? "",
+			GENESIS_MCP_ACCOUNT_ID: params.agentAccountId ?? "",
+			GENESIS_MCP_SESSION_KEY: params.sessionKey ?? "",
+			GENESIS_MCP_MESSAGE_CHANNEL: params.messageChannel ?? params.messageProvider ?? ""
+		} : void 0,
+		warn: (message) => cliBackendLog.warn(message)
+	});
+	const preparedExecution = await backendResolved.prepareExecution?.({
+		config: params.config,
+		workspaceDir,
+		agentDir,
+		provider: params.provider,
+		modelId,
+		authProfileId: effectiveAuthProfileId
+	});
+	const skipLocalCredentialEpoch = shouldSkipLocalCliCredentialEpoch({
+		authEpochMode: backendResolved.authEpochMode,
+		authProfileId: effectiveAuthProfileId,
+		authCredential,
+		preparedExecution
+	});
+	const authEpoch = await resolveCliAuthEpoch({
+		provider: params.provider,
+		authProfileId: effectiveAuthProfileId,
+		skipLocalCredential: skipLocalCredentialEpoch
+	});
+	const preparedBackendEnv = preparedExecution?.env && Object.keys(preparedExecution.env).length > 0 ? {
+		...preparedBackend.env,
+		...preparedExecution.env
+	} : preparedBackend.env;
+	const preparedBackendCleanup = preparedBackend.cleanup || preparedExecution?.cleanup ? async () => {
+		try {
+			await preparedExecution?.cleanup?.();
+		} finally {
+			await preparedBackend.cleanup?.();
+		}
+	} : void 0;
+	const preparedBackendClearEnv = [...preparedBackend.backend.clearEnv ?? [], ...preparedExecution?.clearEnv ?? []];
+	const preparedBackendFinal = {
+		...preparedBackend,
+		backend: {
+			...preparedBackend.backend,
+			...preparedBackendClearEnv.length > 0 ? { clearEnv: Array.from(new Set(preparedBackendClearEnv)) } : {}
+		},
+		...preparedBackendEnv ? { env: preparedBackendEnv } : {},
+		...preparedBackendCleanup ? { cleanup: preparedBackendCleanup } : {}
+	};
+	const reusableCliSession = params.cliSessionBinding ? resolveCliSessionReuse({
+		binding: params.cliSessionBinding,
+		authProfileId: effectiveAuthProfileId,
+		authEpoch,
+		authEpochVersion: 3,
+		extraSystemPromptHash,
+		mcpConfigHash: preparedBackendFinal.mcpConfigHash,
+		mcpResumeHash: preparedBackendFinal.mcpResumeHash
+	}) : params.cliSessionId ? { sessionId: params.cliSessionId } : {};
+	if (reusableCliSession.invalidatedReason) cliBackendLog.info(`cli session reset: provider=${params.provider} reason=${reusableCliSession.invalidatedReason}`);
+	const heartbeatPrompt = resolveHeartbeatPromptForSystemPrompt({
+		config: params.config,
+		agentId: sessionAgentId,
+		defaultAgentId
+	});
+	const docsPath = await prepareDeps.resolveGenesisDocsPath({
+		workspaceDir,
+		argv1: process.argv[1],
+		cwd: process.cwd(),
+		moduleUrl: import.meta.url
+	});
+	const skillsPrompt = resolveSkillsPromptForRun({
+		skillsSnapshot: params.skillsSnapshot,
+		workspaceDir,
+		config: params.config,
+		agentId: sessionAgentId
+	});
+	const builtSystemPrompt = resolveSystemPromptOverride({
+		config: params.config,
+		agentId: sessionAgentId
+	}) ?? buildSystemPrompt({
+		workspaceDir,
+		config: params.config,
+		defaultThinkLevel: params.thinkLevel,
+		extraSystemPrompt,
+		ownerNumbers: params.ownerNumbers,
+		heartbeatPrompt,
+		docsPath: docsPath ?? void 0,
+		skillsPrompt,
+		tools: [],
+		contextFiles,
+		modelDisplay,
+		agentId: sessionAgentId
+	});
+	let systemPrompt = backendResolved.transformSystemPrompt?.({
+		config: params.config,
+		workspaceDir,
+		provider: params.provider,
+		modelId,
+		modelDisplay,
+		agentId: sessionAgentId,
+		systemPrompt: builtSystemPrompt
+	}) ?? builtSystemPrompt;
+	let preparedPrompt = params.prompt;
+	const hookRunner = getGlobalHookRunner();
+	if (hookRunner?.hasHooks("before_prompt_build") || hookRunner?.hasHooks("before_agent_start")) try {
+		const hookResult = await resolvePromptBuildHookResult({
+			prompt: params.prompt,
+			messages: loadCliSessionHistoryMessages({
+				sessionId: params.sessionId,
+				sessionFile: params.sessionFile,
+				sessionKey: params.sessionKey,
+				agentId: params.agentId,
+				config: params.config
+			}),
+			hookCtx: {
+				runId: params.runId,
+				agentId: sessionAgentId,
+				sessionKey: params.sessionKey,
+				sessionId: params.sessionId,
+				workspaceDir,
+				modelProviderId: params.provider,
+				modelId,
+				messageProvider: params.messageProvider,
+				trigger: params.trigger,
+				channelId: params.messageChannel ?? params.messageProvider
+			},
+			hookRunner
+		});
+		if (hookResult.prependContext) preparedPrompt = `${hookResult.prependContext}\n\n${preparedPrompt}`;
+		const hookSystemPrompt = hookResult.systemPrompt?.trim();
+		if (hookSystemPrompt) systemPrompt = hookSystemPrompt;
+		systemPrompt = composeSystemPromptWithHookContext({
+			baseSystemPrompt: systemPrompt,
+			prependSystemContext: resolveAttemptPrependSystemContext({
+				sessionKey: params.sessionKey,
+				trigger: params.trigger,
+				hookPrependSystemContext: hookResult.prependSystemContext
+			}),
+			appendSystemContext: hookResult.appendSystemContext
+		}) ?? systemPrompt;
+	} catch (error) {
+		cliBackendLog.warn(`cli prompt-build hook preparation failed: ${String(error)}`);
+	}
+	systemPrompt = applyPluginTextReplacements(systemPrompt, backendResolved.textTransforms?.input);
+	const systemPromptReport = buildSystemPromptReport({
+		source: "run",
+		generatedAt: Date.now(),
+		sessionId: params.sessionId,
+		sessionKey: params.sessionKey,
+		provider: params.provider,
+		model: modelId,
+		workspaceDir,
+		bootstrapMaxChars,
+		bootstrapTotalMaxChars,
+		bootstrapTruncation: buildBootstrapTruncationReportMeta({
+			analysis: bootstrapAnalysis,
+			warningMode: bootstrapPromptWarningMode,
+			warning: bootstrapPromptWarning
+		}),
+		sandbox: {
+			mode: "off",
+			sandboxed: false
+		},
+		systemPrompt,
+		bootstrapFiles,
+		injectedFiles: contextFiles,
+		skillsPrompt,
+		tools: []
+	});
+	return {
+		params: preparedPrompt === params.prompt ? params : {
+			...params,
+			prompt: preparedPrompt
+		},
+		effectiveAuthProfileId,
+		started,
+		workspaceDir,
+		backendResolved,
+		preparedBackend: preparedBackendFinal,
+		reusableCliSession,
+		modelId,
+		normalizedModel,
+		systemPrompt,
+		systemPromptReport,
+		bootstrapPromptWarningLines: bootstrapPromptWarning.lines,
+		heartbeatPrompt,
+		authEpoch,
+		authEpochVersion: 3,
+		extraSystemPromptHash
+	};
+}
+//#endregion
+export { prepareCliRunContext };