@pixelzx/genesis 2026.5.10-6 → 2026.5.14

package/dist/cli.runtime-DLaMMW9D.js

@@ -0,0 +1,1261 @@
+import { i as formatErrorMessage } from "./errors-Jbvi20TW.js";
+import { w as setVerbose } from "./logger-QwLssHIf.js";
+import { _ as shortenHomePath, g as shortenHomeInString } from "./utils-DaGfogP-.js";
+import { n as defaultRuntime } from "./runtime-CQ7eH0le.js";
+import { n as resolvePreferredGenesisTmpDir } from "./tmp-genesis-dir-B4F3mzr8.js";
+import { n as isRich, r as theme, t as colorize } from "./theme-BrRleVfL.js";
+import { _ as resolveStateDir } from "./paths-DmR9mjUX.js";
+import { a as loadConfig } from "./io-DK8qz7fQ.js";
+import { n as asNullableRecord } from "./record-coerce-BpObaVhi.js";
+import { x as resolveDefaultAgentId } from "./agent-scope-CDjZLqNk.js";
+import { V as resolveMemoryRemDreamingConfig } from "./dreaming-kMhzCdpd.js";
+import { l as resolveSessionTranscriptsDirForAgent } from "./paths-DD6L4IvS.js";
+import { t as resolveCommandSecretRefsViaGateway } from "./command-secret-gateway-CeBdQ0UB.js";
+import { t as buildAgentSessionKey } from "./resolve-route-CKpyD4Rx.js";
+import "./routing-CXjMOYdN.js";
+import { n as withProgress, r as withProgressTotals } from "./progress-B0hhA4sH.js";
+import { r as withManager } from "./cli-utils-D3GqJh_O.js";
+import "./memory-core-host-runtime-core-B_HGCWqS.js";
+import "./memory-core-host-runtime-cli-sTNTqMrk.js";
+import "./memory-core-host-status-CbKj2-Sz.js";
+import { c as listMemoryFiles, l as normalizeExtraMemoryPaths } from "./internal-B6Rn4x9J.js";
+import "./memory-core-host-runtime-files-D5aPIbRT.js";
+import { a as readShortTermRecallEntries, c as recordShortTermRecalls, d as resolveShortTermRecallLockPath, f as resolveShortTermRecallStorePath, i as rankShortTermPromotionCandidates, l as removeGroundedShortTermCandidates, n as applyShortTermPromotions, r as auditShortTermPromotionArtifacts, s as recordGroundedShortTermCandidates, u as repairShortTermPromotionArtifacts } from "./short-term-promotion-BzwA5B6a.js";
+import "./dreaming-shared-DDVZZqmZ.js";
+import { i as seedHistoricalDailyMemorySignals, n as resolveShortTermPromotionDreamingConfig, r as previewRemDreaming } from "./dreaming-zJ9qLCLz.js";
+import { a as writeBackfillDiaryEntries, i as removeBackfillDiaryEntries } from "./dreaming-narrative-CJu_lIBP.js";
+import { n as getMemorySearchManager } from "./memory-_0rMQr4I.js";
+import { t as previewGroundedRemMarkdown } from "./rem-evidence-DGQNrMS5.js";
+import { n as repairDreamingArtifacts, t as auditDreamingArtifacts } from "./dreaming-repair-BP4pk2uR.js";
+import fs from "node:fs";
+import path from "node:path";
+import os from "node:os";
+import fs$1 from "node:fs/promises";
+//#region extensions/memory-core/src/cli.runtime.ts
+function getMemoryCommandSecretTargetIds() {
+	return new Set(["agents.defaults.memorySearch.remote.apiKey", "agents.list[].memorySearch.remote.apiKey"]);
+}
+async function loadMemoryCommandConfig(commandName) {
+	const { resolvedConfig, diagnostics } = await resolveCommandSecretRefsViaGateway({
+		config: loadConfig(),
+		commandName,
+		targetIds: getMemoryCommandSecretTargetIds()
+	});
+	return {
+		config: resolvedConfig,
+		diagnostics
+	};
+}
+function emitMemorySecretResolveDiagnostics(diagnostics, params) {
+	if (diagnostics.length === 0) return;
+	const toStderr = params?.json === true;
+	for (const entry of diagnostics) {
+		const message = theme.warn(`[secrets] ${entry}`);
+		if (toStderr) defaultRuntime.error(message);
+		else defaultRuntime.log(message);
+	}
+}
+function resolveMemoryPluginConfig(cfg) {
+	return asNullableRecord(asNullableRecord(cfg.plugins?.entries?.["memory-core"])?.config) ?? {};
+}
+const DAILY_MEMORY_FILE_NAME_RE = /^(\d{4}-\d{2}-\d{2})\.md$/;
+async function listHistoricalDailyFiles(inputPath) {
+	const resolvedPath = path.resolve(inputPath);
+	let stat;
+	try {
+		stat = await fs$1.stat(resolvedPath);
+	} catch (err) {
+		if (err?.code === "ENOENT") return [];
+		throw err;
+	}
+	if (stat.isFile()) return DAILY_MEMORY_FILE_NAME_RE.test(path.basename(resolvedPath)) ? [resolvedPath] : [];
+	if (!stat.isDirectory()) return [];
+	return (await fs$1.readdir(resolvedPath, { withFileTypes: true })).filter((entry) => entry.isFile() && DAILY_MEMORY_FILE_NAME_RE.test(entry.name)).map((entry) => path.join(resolvedPath, entry.name)).toSorted((a, b) => path.basename(a).localeCompare(path.basename(b)));
+}
+async function createHistoricalRemHarnessWorkspace(params) {
+	const sourceFiles = await listHistoricalDailyFiles(params.inputPath);
+	const workspaceDir = await fs$1.mkdtemp(path.join(resolvePreferredGenesisTmpDir(), "genesis-rem-harness-"));
+	const memoryDir = path.join(workspaceDir, "memory");
+	await fs$1.mkdir(memoryDir, { recursive: true });
+	for (const filePath of sourceFiles) await fs$1.copyFile(filePath, path.join(memoryDir, path.basename(filePath)));
+	const workspaceSourceFiles = sourceFiles.map((entry) => path.join(memoryDir, path.basename(entry)));
+	const seeded = await seedHistoricalDailyMemorySignals({
+		workspaceDir,
+		filePaths: workspaceSourceFiles,
+		limit: params.remLimit,
+		nowMs: params.nowMs,
+		timezone: params.timezone
+	});
+	return {
+		workspaceDir,
+		sourceFiles,
+		workspaceSourceFiles,
+		importedFileCount: seeded.importedFileCount,
+		importedSignalCount: seeded.importedSignalCount,
+		skippedPaths: seeded.skippedPaths
+	};
+}
+async function listWorkspaceDailyFiles(workspaceDir, limit) {
+	const memoryDir = path.join(workspaceDir, "memory");
+	try {
+		const files = await listHistoricalDailyFiles(memoryDir);
+		if (!Number.isFinite(limit) || limit <= 0 || files.length <= limit) return files;
+		return files.slice(-limit);
+	} catch (err) {
+		if (err.code === "ENOENT") return [];
+		throw err;
+	}
+}
+function formatDreamingSummary(cfg) {
+	const dreaming = resolveShortTermPromotionDreamingConfig({
+		pluginConfig: resolveMemoryPluginConfig(cfg),
+		cfg
+	});
+	if (!dreaming.enabled) return "off";
+	const timezone = dreaming.timezone ? ` (${dreaming.timezone})` : "";
+	return `${dreaming.cron}${timezone} · limit=${dreaming.limit} · minScore=${dreaming.minScore} · minRecallCount=${dreaming.minRecallCount} · minUniqueQueries=${dreaming.minUniqueQueries} · recencyHalfLifeDays=${dreaming.recencyHalfLifeDays} · maxAgeDays=${dreaming.maxAgeDays ?? "none"}`;
+}
+function formatAuditCounts(audit) {
+	const scriptCoverage = audit.conceptTagScripts ? [
+		audit.conceptTagScripts.latinEntryCount > 0 ? `${audit.conceptTagScripts.latinEntryCount} latin` : null,
+		audit.conceptTagScripts.cjkEntryCount > 0 ? `${audit.conceptTagScripts.cjkEntryCount} cjk` : null,
+		audit.conceptTagScripts.mixedEntryCount > 0 ? `${audit.conceptTagScripts.mixedEntryCount} mixed` : null,
+		audit.conceptTagScripts.otherEntryCount > 0 ? `${audit.conceptTagScripts.otherEntryCount} other` : null
+	].filter(Boolean).join(", ") : "";
+	const suffix = scriptCoverage ? ` · scripts=${scriptCoverage}` : "";
+	return `${audit.entryCount} entries · ${audit.promotedCount} promoted · ${audit.conceptTaggedEntryCount} concept-tagged · ${audit.spacedEntryCount} spaced${suffix}`;
+}
+function formatRepairSummary(repair) {
+	const actions = [];
+	if (repair.rewroteStore) actions.push(`rewrote store${repair.removedInvalidEntries > 0 ? ` (-${repair.removedInvalidEntries} invalid)` : ""}`);
+	if (repair.removedStaleLock) actions.push("removed stale lock");
+	return actions.length > 0 ? actions.join(" · ") : "no changes";
+}
+function formatDreamingAuditSummary(audit) {
+	return [
+		audit.dreamsPath ? "diary present" : "diary absent",
+		`${audit.sessionCorpusFileCount} corpus files`,
+		audit.sessionIngestionExists ? "ingestion state present" : "ingestion state absent",
+		audit.suspiciousSessionCorpusLineCount > 0 ? `${audit.suspiciousSessionCorpusLineCount} suspicious lines` : null
+	].filter(Boolean).join(" · ");
+}
+function formatDreamingRepairSummary(repair) {
+	const actions = [];
+	if (repair.archivedSessionCorpus) actions.push("archived session corpus");
+	if (repair.archivedSessionIngestion) actions.push("archived ingestion state");
+	if (repair.archivedDreamsDiary) actions.push("archived diary");
+	if (repair.warnings.length > 0) actions.push(`${repair.warnings.length} warning${repair.warnings.length === 1 ? "" : "s"}`);
+	return actions.length > 0 ? actions.join(" · ") : "no changes";
+}
+function formatSourceLabel(source, workspaceDir, agentId) {
+	if (source === "memory") return shortenHomeInString(`memory (MEMORY.md + ${path.join(workspaceDir, "memory")}${path.sep}*.md)`);
+	if (source === "sessions") {
+		const stateDir = resolveStateDir(process.env, os.homedir);
+		return shortenHomeInString(`sessions (${path.join(stateDir, "agents", agentId, "sessions")}${path.sep}*.jsonl)`);
+	}
+	return source;
+}
+function resolveAgent(cfg, agent) {
+	const trimmed = agent?.trim();
+	if (trimmed) return trimmed;
+	return resolveDefaultAgentId(cfg);
+}
+function buildCliMemorySearchSessionKey(agentId) {
+	return buildAgentSessionKey({
+		agentId,
+		channel: "cli",
+		peer: {
+			kind: "direct",
+			id: "memory-search"
+		},
+		dmScope: "per-channel-peer"
+	});
+}
+function resolveAgentIds(cfg, agent) {
+	const trimmed = agent?.trim();
+	if (trimmed) return [trimmed];
+	const list = cfg.agents?.list ?? [];
+	if (list.length > 0) return list.map((entry) => entry.id).filter(Boolean);
+	return [resolveDefaultAgentId(cfg)];
+}
+function formatExtraPaths(workspaceDir, extraPaths) {
+	return normalizeExtraMemoryPaths(workspaceDir, extraPaths).map((entry) => shortenHomePath(entry));
+}
+function extractIsoDayFromPath(filePath) {
+	return path.basename(filePath).match(DAILY_MEMORY_FILE_NAME_RE)?.[1] ?? null;
+}
+function groundedMarkdownToDiaryLines(markdown) {
+	return markdown.split(/\r?\n/).map((line) => line.replace(/^##\s+/, "").trimEnd()).filter((line, index, lines) => !(line.length === 0 && lines[index - 1]?.length === 0));
+}
+function parseGroundedRef(fallbackPath, ref) {
+	const trimmed = ref.trim();
+	if (!trimmed) return null;
+	const match = trimmed.match(/^(.*?):(\d+)(?:-(\d+))?$/);
+	if (!match) return null;
+	return {
+		path: (match[1] ?? fallbackPath).replaceAll("\\", "/").replace(/^\.\//, ""),
+		startLine: Math.max(1, Number(match[2])),
+		endLine: Math.max(1, Number(match[3] ?? match[2]))
+	};
+}
+function collectGroundedShortTermSeedItems(previews) {
+	const items = [];
+	const seen = /* @__PURE__ */ new Set();
+	for (const file of previews) {
+		const dayBucket = extractIsoDayFromPath(file.path) ?? void 0;
+		const signals = [...file.memoryImplications.map((item) => ({
+			text: item.text,
+			refs: item.refs,
+			score: .92,
+			query: "__dreaming_grounded_backfill__:lasting-update",
+			signalCount: 2
+		})), ...file.candidates.filter((candidate) => candidate.lean === "likely_durable").map((candidate) => ({
+			text: candidate.text,
+			refs: candidate.refs,
+			score: .82,
+			query: "__dreaming_grounded_backfill__:candidate",
+			signalCount: 1
+		}))];
+		for (const signal of signals) {
+			if (!signal.text.trim()) continue;
+			const firstRef = signal.refs.find((ref) => ref.trim().length > 0);
+			const parsedRef = firstRef ? parseGroundedRef(file.path, firstRef) : null;
+			if (!parsedRef) continue;
+			const key = `${parsedRef.path}:${parsedRef.startLine}:${parsedRef.endLine}:${signal.query}:${signal.text.toLowerCase()}`;
+			if (seen.has(key)) continue;
+			seen.add(key);
+			items.push({
+				path: parsedRef.path,
+				startLine: parsedRef.startLine,
+				endLine: parsedRef.endLine,
+				snippet: signal.text,
+				score: signal.score,
+				query: signal.query,
+				signalCount: signal.signalCount,
+				...dayBucket ? { dayBucket } : {}
+			});
+		}
+	}
+	return items;
+}
+function matchesPromotionSelector(candidate, selector) {
+	const trimmed = selector.trim().toLowerCase();
+	if (!trimmed) return false;
+	return candidate.key.toLowerCase() === trimmed || candidate.key.toLowerCase().includes(trimmed) || candidate.path.toLowerCase().includes(trimmed) || candidate.snippet.toLowerCase().includes(trimmed);
+}
+async function withMemoryManagerForAgent(params) {
+	const managerParams = {
+		cfg: params.cfg,
+		agentId: params.agentId
+	};
+	if (params.purpose) managerParams.purpose = params.purpose;
+	await withManager({
+		getManager: () => getMemorySearchManager(managerParams),
+		onMissing: (error) => defaultRuntime.log(error ?? "Memory search disabled."),
+		onCloseError: (err) => defaultRuntime.error(`Memory manager close failed: ${formatErrorMessage(err)}`),
+		close: async (manager) => {
+			await manager.close?.();
+		},
+		run: params.run
+	});
+}
+async function checkReadableFile(pathname) {
+	try {
+		await fs$1.access(pathname, fs.constants.R_OK);
+		return { exists: true };
+	} catch (err) {
+		const code = err.code;
+		if (code === "ENOENT") return { exists: false };
+		return {
+			exists: true,
+			issue: `${shortenHomePath(pathname)} not readable (${code ?? "error"})`
+		};
+	}
+}
+async function scanSessionFiles(agentId) {
+	const issues = [];
+	const sessionsDir = resolveSessionTranscriptsDirForAgent(agentId);
+	try {
+		return {
+			source: "sessions",
+			totalFiles: (await fs$1.readdir(sessionsDir, { withFileTypes: true })).filter((entry) => entry.isFile() && entry.name.endsWith(".jsonl")).length,
+			issues
+		};
+	} catch (err) {
+		const code = err.code;
+		if (code === "ENOENT") {
+			issues.push(`sessions directory missing (${shortenHomePath(sessionsDir)})`);
+			return {
+				source: "sessions",
+				totalFiles: 0,
+				issues
+			};
+		}
+		issues.push(`sessions directory not accessible (${shortenHomePath(sessionsDir)}): ${code ?? "error"}`);
+		return {
+			source: "sessions",
+			totalFiles: null,
+			issues
+		};
+	}
+}
+async function scanMemoryFiles(workspaceDir, extraPaths = []) {
+	const issues = [];
+	const memoryFile = path.join(workspaceDir, "MEMORY.md");
+	const memoryDir = path.join(workspaceDir, "memory");
+	const primary = await checkReadableFile(memoryFile);
+	if (primary.issue) issues.push(primary.issue);
+	const resolvedExtraPaths = normalizeExtraMemoryPaths(workspaceDir, extraPaths);
+	for (const extraPath of resolvedExtraPaths) try {
+		if ((await fs$1.lstat(extraPath)).isSymbolicLink()) continue;
+		const extraCheck = await checkReadableFile(extraPath);
+		if (extraCheck.issue) issues.push(extraCheck.issue);
+	} catch (err) {
+		const code = err.code;
+		if (code === "ENOENT") issues.push(`additional memory path missing (${shortenHomePath(extraPath)})`);
+		else issues.push(`additional memory path not accessible (${shortenHomePath(extraPath)}): ${code ?? "error"}`);
+	}
+	let dirReadable = null;
+	try {
+		await fs$1.access(memoryDir, fs.constants.R_OK);
+		dirReadable = true;
+	} catch (err) {
+		const code = err.code;
+		if (code === "ENOENT") {
+			issues.push(`memory directory missing (${shortenHomePath(memoryDir)})`);
+			dirReadable = false;
+		} else {
+			issues.push(`memory directory not accessible (${shortenHomePath(memoryDir)}): ${code ?? "error"}`);
+			dirReadable = null;
+		}
+	}
+	let listed = [];
+	let listedOk = false;
+	try {
+		listed = await listMemoryFiles(workspaceDir, resolvedExtraPaths);
+		listedOk = true;
+	} catch (err) {
+		const code = err.code;
+		if (dirReadable !== null) {
+			issues.push(`memory directory scan failed (${shortenHomePath(memoryDir)}): ${code ?? "error"}`);
+			dirReadable = null;
+		}
+	}
+	let totalFiles = 0;
+	if (dirReadable === null) totalFiles = null;
+	else {
+		const files = new Set(listedOk ? listed : []);
+		if (!listedOk) {
+			if (primary.exists) files.add(memoryFile);
+		}
+		totalFiles = files.size;
+	}
+	if ((totalFiles ?? 0) === 0 && issues.length === 0) issues.push(`no memory files found in ${shortenHomePath(workspaceDir)}`);
+	return {
+		source: "memory",
+		totalFiles,
+		issues
+	};
+}
+async function summarizeQmdIndexArtifact(manager) {
+	const status = manager.status?.();
+	if (!status || status.backend !== "qmd") return null;
+	const dbPath = status.dbPath?.trim();
+	if (!dbPath) return null;
+	let stat;
+	try {
+		stat = await fs$1.stat(dbPath);
+	} catch (err) {
+		const code = err.code;
+		if (code === "ENOENT") throw new Error(`QMD index file not found: ${shortenHomePath(dbPath)}`, { cause: err });
+		throw new Error(`QMD index file check failed: ${shortenHomePath(dbPath)} (${code ?? "error"})`, { cause: err });
+	}
+	if (!stat.isFile() || stat.size <= 0) throw new Error(`QMD index file is empty: ${shortenHomePath(dbPath)}`);
+	return `QMD index: ${shortenHomePath(dbPath)} (${stat.size} bytes)`;
+}
+async function scanMemorySources(params) {
+	const scans = [];
+	const extraPaths = params.extraPaths ?? [];
+	for (const source of params.sources) {
+		if (source === "memory") scans.push(await scanMemoryFiles(params.workspaceDir, extraPaths));
+		if (source === "sessions") scans.push(await scanSessionFiles(params.agentId));
+	}
+	const issues = scans.flatMap((scan) => scan.issues);
+	const totals = scans.map((scan) => scan.totalFiles);
+	const numericTotals = totals.filter((total) => total !== null);
+	return {
+		sources: scans,
+		totalFiles: totals.some((total) => total === null) ? null : numericTotals.reduce((sum, total) => sum + total, 0),
+		issues
+	};
+}
+async function runMemoryStatus(opts) {
+	setVerbose(Boolean(opts.verbose));
+	const { config: cfg, diagnostics } = await loadMemoryCommandConfig("memory status");
+	emitMemorySecretResolveDiagnostics(diagnostics, { json: Boolean(opts.json) });
+	const agentIds = resolveAgentIds(cfg, opts.agent);
+	const allResults = [];
+	for (const agentId of agentIds) await withMemoryManagerForAgent({
+		cfg,
+		agentId,
+		purpose: opts.index ? "default" : "status",
+		run: async (manager) => {
+			const deep = Boolean(opts.deep || opts.index);
+			let embeddingProbe;
+			let indexError;
+			const syncFn = manager.sync ? manager.sync.bind(manager) : void 0;
+			if (deep) {
+				await withProgress({
+					label: "Checking memory…",
+					total: 2
+				}, async (progress) => {
+					progress.setLabel("Probing vector…");
+					await manager.probeVectorAvailability();
+					progress.tick();
+					progress.setLabel("Probing embeddings…");
+					embeddingProbe = await manager.probeEmbeddingAvailability();
+					progress.tick();
+				});
+				if (opts.index && syncFn) await withProgressTotals({
+					label: "Indexing memory…",
+					total: 0,
+					fallback: opts.verbose ? "line" : void 0
+				}, async (update, progress) => {
+					try {
+						await syncFn({
+							reason: "cli",
+							force: Boolean(opts.force),
+							progress: (syncUpdate) => {
+								update({
+									completed: syncUpdate.completed,
+									total: syncUpdate.total,
+									label: syncUpdate.label
+								});
+								if (syncUpdate.label) progress.setLabel(syncUpdate.label);
+							}
+						});
+					} catch (err) {
+						indexError = formatErrorMessage(err);
+						defaultRuntime.error(`Memory index failed: ${indexError}`);
+						process.exitCode = 1;
+					}
+				});
+				else if (opts.index && !syncFn) defaultRuntime.log("Memory backend does not support manual reindex.");
+			} else await manager.probeVectorAvailability();
+			const status = manager.status();
+			const sources = status.sources?.length ? status.sources : ["memory"];
+			const workspaceDir = status.workspaceDir;
+			const scan = workspaceDir ? await scanMemorySources({
+				workspaceDir,
+				agentId,
+				sources,
+				extraPaths: status.extraPaths
+			}) : void 0;
+			let audit;
+			let repair;
+			let dreamingAudit;
+			let dreamingRepair;
+			if (workspaceDir) {
+				dreamingAudit = await auditDreamingArtifacts({ workspaceDir });
+				if (opts.fix && dreamingAudit.issues.some((issue) => issue.fixable)) {
+					dreamingRepair = await repairDreamingArtifacts({ workspaceDir });
+					dreamingAudit = await auditDreamingArtifacts({ workspaceDir });
+				}
+				if (opts.fix) repair = await repairShortTermPromotionArtifacts({ workspaceDir });
+				const customQmd = asNullableRecord(asNullableRecord(status.custom)?.qmd);
+				audit = await auditShortTermPromotionArtifacts({
+					workspaceDir,
+					qmd: status.backend === "qmd" ? {
+						dbPath: status.dbPath,
+						collections: typeof customQmd?.collections === "number" ? customQmd.collections : void 0
+					} : void 0
+				});
+			}
+			allResults.push({
+				agentId,
+				status,
+				embeddingProbe,
+				indexError,
+				scan,
+				audit,
+				repair,
+				dreamingAudit,
+				dreamingRepair
+			});
+		}
+	});
+	if (opts.json) {
+		defaultRuntime.writeJson(allResults);
+		return;
+	}
+	const rich = isRich();
+	const heading = (text) => colorize(rich, theme.heading, text);
+	const muted = (text) => colorize(rich, theme.muted, text);
+	const info = (text) => colorize(rich, theme.info, text);
+	const success = (text) => colorize(rich, theme.success, text);
+	const warn = (text) => colorize(rich, theme.warn, text);
+	const accent = (text) => colorize(rich, theme.accent, text);
+	const label = (text) => muted(`${text}:`);
+	for (const result of allResults) {
+		const { agentId, status, embeddingProbe, indexError, scan, audit, repair, dreamingAudit, dreamingRepair } = result;
+		const filesIndexed = status.files ?? 0;
+		const chunksIndexed = status.chunks ?? 0;
+		const totalFiles = scan?.totalFiles ?? null;
+		const indexedLabel = totalFiles === null ? `${filesIndexed}/? files · ${chunksIndexed} chunks` : `${filesIndexed}/${totalFiles} files · ${chunksIndexed} chunks`;
+		if (opts.index) {
+			const line = indexError ? `Memory index failed: ${indexError}` : "Memory index complete.";
+			defaultRuntime.log(line);
+		}
+		const requestedProvider = status.requestedProvider ?? status.provider;
+		const modelLabel = status.model ?? status.provider;
+		const storePath = status.dbPath ? shortenHomePath(status.dbPath) : "<unknown>";
+		const workspacePath = status.workspaceDir ? shortenHomePath(status.workspaceDir) : "<unknown>";
+		const sourceList = status.sources?.length ? status.sources.join(", ") : null;
+		const extraPaths = status.workspaceDir ? formatExtraPaths(status.workspaceDir, status.extraPaths ?? []) : [];
+		const lines = [
+			`${heading("Memory Search")} ${muted(`(${agentId})`)}`,
+			`${label("Provider")} ${info(status.provider)} ${muted(`(requested: ${requestedProvider})`)}`,
+			`${label("Model")} ${info(modelLabel)}`,
+			sourceList ? `${label("Sources")} ${info(sourceList)}` : null,
+			extraPaths.length ? `${label("Extra paths")} ${info(extraPaths.join(", "))}` : null,
+			`${label("Indexed")} ${success(indexedLabel)}`,
+			`${label("Dirty")} ${status.dirty ? warn("yes") : muted("no")}`,
+			`${label("Store")} ${info(storePath)}`,
+			`${label("Workspace")} ${info(workspacePath)}`,
+			`${label("Dreaming")} ${info(formatDreamingSummary(cfg))}`
+		].filter(Boolean);
+		if (embeddingProbe) {
+			const state = embeddingProbe.ok ? "ready" : "unavailable";
+			const stateColor = embeddingProbe.ok ? theme.success : theme.warn;
+			lines.push(`${label("Embeddings")} ${colorize(rich, stateColor, state)}`);
+			if (embeddingProbe.error) lines.push(`${label("Embeddings error")} ${warn(embeddingProbe.error)}`);
+		}
+		if (status.sourceCounts?.length) {
+			lines.push(label("By source"));
+			for (const entry of status.sourceCounts) {
+				const total = scan?.sources?.find((scanEntry) => scanEntry.source === entry.source)?.totalFiles;
+				const counts = total === null ? `${entry.files}/? files · ${entry.chunks} chunks` : `${entry.files}/${total} files · ${entry.chunks} chunks`;
+				lines.push(`  ${accent(entry.source)} ${muted("·")} ${muted(counts)}`);
+			}
+		}
+		if (status.fallback) lines.push(`${label("Fallback")} ${warn(status.fallback.from)}`);
+		if (status.vector) {
+			const vectorState = status.vector.enabled ? status.vector.available === void 0 ? "unknown" : status.vector.available ? "ready" : "unavailable" : "disabled";
+			const vectorColor = vectorState === "ready" ? theme.success : vectorState === "unavailable" ? theme.warn : theme.muted;
+			lines.push(`${label("Vector")} ${colorize(rich, vectorColor, vectorState)}`);
+			if (status.vector.dims) lines.push(`${label("Vector dims")} ${info(String(status.vector.dims))}`);
+			if (status.vector.extensionPath) lines.push(`${label("Vector path")} ${info(shortenHomePath(status.vector.extensionPath))}`);
+			if (status.vector.loadError) lines.push(`${label("Vector error")} ${warn(status.vector.loadError)}`);
+		}
+		if (status.fts) {
+			const ftsState = status.fts.enabled ? status.fts.available ? "ready" : "unavailable" : "disabled";
+			const ftsColor = ftsState === "ready" ? theme.success : ftsState === "unavailable" ? theme.warn : theme.muted;
+			lines.push(`${label("FTS")} ${colorize(rich, ftsColor, ftsState)}`);
+			if (status.fts.error) lines.push(`${label("FTS error")} ${warn(status.fts.error)}`);
+		}
+		if (status.cache) {
+			const cacheState = status.cache.enabled ? "enabled" : "disabled";
+			const cacheColor = status.cache.enabled ? theme.success : theme.muted;
+			const suffix = status.cache.enabled && typeof status.cache.entries === "number" ? ` (${status.cache.entries} entries)` : "";
+			lines.push(`${label("Embedding cache")} ${colorize(rich, cacheColor, cacheState)}${suffix}`);
+			if (status.cache.enabled && typeof status.cache.maxEntries === "number") lines.push(`${label("Cache cap")} ${info(String(status.cache.maxEntries))}`);
+		}
+		if (status.batch) {
+			const batchState = status.batch.enabled ? "enabled" : "disabled";
+			const batchColor = status.batch.enabled ? theme.success : theme.warn;
+			const batchSuffix = ` (failures ${status.batch.failures}/${status.batch.limit})`;
+			lines.push(`${label("Batch")} ${colorize(rich, batchColor, batchState)}${muted(batchSuffix)}`);
+			if (status.batch.lastError) lines.push(`${label("Batch error")} ${warn(status.batch.lastError)}`);
+		}
+		if (audit) {
+			lines.push(`${label("Recall store")} ${info(formatAuditCounts(audit))}`);
+			lines.push(`${label("Recall path")} ${info(shortenHomePath(audit.storePath))}`);
+			if (audit.updatedAt) lines.push(`${label("Recall updated")} ${info(audit.updatedAt)}`);
+			if (status.backend === "qmd" && audit.qmd) {
+				const qmdBits = [
+					audit.qmd.dbPath ? shortenHomePath(audit.qmd.dbPath) : "<unknown>",
+					typeof audit.qmd.dbBytes === "number" ? `${audit.qmd.dbBytes} bytes` : null,
+					typeof audit.qmd.collections === "number" ? `${audit.qmd.collections} collections` : null
+				].filter(Boolean);
+				lines.push(`${label("QMD audit")} ${info(qmdBits.join(" · "))}`);
+			}
+		}
+		if (dreamingAudit) {
+			lines.push(`${label("Dreaming artifacts")} ${info(formatDreamingAuditSummary(dreamingAudit))}`);
+			lines.push(`${label("Dream corpus")} ${info(shortenHomePath(dreamingAudit.sessionCorpusDir))}`);
+			lines.push(`${label("Dream ingestion")} ${info(shortenHomePath(dreamingAudit.sessionIngestionPath))}`);
+			if (dreamingAudit.dreamsPath) lines.push(`${label("Dream diary")} ${info(shortenHomePath(dreamingAudit.dreamsPath))}`);
+		}
+		if (repair) lines.push(`${label("Repair")} ${info(formatRepairSummary(repair))}`);
+		if (dreamingRepair) {
+			lines.push(`${label("Dream repair")} ${info(formatDreamingRepairSummary(dreamingRepair))}`);
+			if (dreamingRepair.archiveDir) lines.push(`${label("Dream archive")} ${info(shortenHomePath(dreamingRepair.archiveDir))}`);
+		}
+		if (status.fallback?.reason) lines.push(muted(status.fallback.reason));
+		if (indexError) lines.push(`${label("Index error")} ${warn(indexError)}`);
+		if (scan?.issues.length) {
+			lines.push(label("Issues"));
+			for (const issue of scan.issues) lines.push(`  ${warn(issue)}`);
+		}
+		if (audit?.issues.length) {
+			if (!scan?.issues.length) lines.push(label("Issues"));
+			for (const issue of audit.issues) lines.push(`  ${issue.severity === "error" ? warn(issue.message) : muted(issue.message)}`);
+			if (!opts.fix) lines.push(`  ${muted(`Fix: genesis memory status --fix --agent ${agentId}`)}`);
+		}
+		if (dreamingAudit?.issues.length) {
+			if (!scan?.issues.length && !audit?.issues.length) lines.push(label("Issues"));
+			for (const issue of dreamingAudit.issues) lines.push(`  ${issue.severity === "error" ? warn(issue.message) : muted(issue.message)}`);
+			if (!opts.fix) lines.push(`  ${muted(`Fix: genesis memory status --fix --agent ${agentId}`)}`);
+		}
+		defaultRuntime.log(lines.join("\n"));
+		defaultRuntime.log("");
+	}
+}
+async function runMemoryIndex(opts) {
+	setVerbose(Boolean(opts.verbose));
+	const { config: cfg, diagnostics } = await loadMemoryCommandConfig("memory index");
+	emitMemorySecretResolveDiagnostics(diagnostics);
+	const agentIds = resolveAgentIds(cfg, opts.agent);
+	for (const agentId of agentIds) await withMemoryManagerForAgent({
+		cfg,
+		agentId,
+		run: async (manager) => {
+			try {
+				const syncFn = manager.sync ? manager.sync.bind(manager) : void 0;
+				if (opts.verbose) {
+					const status = manager.status();
+					const rich = isRich();
+					const heading = (text) => colorize(rich, theme.heading, text);
+					const muted = (text) => colorize(rich, theme.muted, text);
+					const info = (text) => colorize(rich, theme.info, text);
+					const warn = (text) => colorize(rich, theme.warn, text);
+					const label = (text) => muted(`${text}:`);
+					const sourceLabels = (status.sources ?? []).map((source) => formatSourceLabel(source, status.workspaceDir ?? "", agentId));
+					const extraPaths = status.workspaceDir ? formatExtraPaths(status.workspaceDir, status.extraPaths ?? []) : [];
+					const requestedProvider = status.requestedProvider ?? status.provider;
+					const modelLabel = status.model ?? status.provider;
+					const lines = [
+						`${heading("Memory Index")} ${muted(`(${agentId})`)}`,
+						`${label("Provider")} ${info(status.provider)} ${muted(`(requested: ${requestedProvider})`)}`,
+						`${label("Model")} ${info(modelLabel)}`,
+						sourceLabels.length ? `${label("Sources")} ${info(sourceLabels.join(", "))}` : null,
+						extraPaths.length ? `${label("Extra paths")} ${info(extraPaths.join(", "))}` : null
+					].filter(Boolean);
+					if (status.fallback) lines.push(`${label("Fallback")} ${warn(status.fallback.from)}`);
+					defaultRuntime.log(lines.join("\n"));
+					defaultRuntime.log("");
+				}
+				const startedAt = Date.now();
+				let lastLabel = "Indexing memory…";
+				let lastCompleted = 0;
+				let lastTotal = 0;
+				const formatElapsed = () => {
+					const elapsedMs = Math.max(0, Date.now() - startedAt);
+					const seconds = Math.floor(elapsedMs / 1e3);
+					const minutes = Math.floor(seconds / 60);
+					const remainingSeconds = seconds % 60;
+					return `${minutes}:${String(remainingSeconds).padStart(2, "0")}`;
+				};
+				const formatEta = () => {
+					if (lastTotal <= 0 || lastCompleted <= 0) return null;
+					const elapsedMs = Math.max(1, Date.now() - startedAt);
+					const rate = lastCompleted / elapsedMs;
+					if (!Number.isFinite(rate) || rate <= 0) return null;
+					const remainingMs = Math.max(0, (lastTotal - lastCompleted) / rate);
+					const seconds = Math.floor(remainingMs / 1e3);
+					const minutes = Math.floor(seconds / 60);
+					const remainingSeconds = seconds % 60;
+					return `${minutes}:${String(remainingSeconds).padStart(2, "0")}`;
+				};
+				const buildLabel = () => {
+					const elapsed = formatElapsed();
+					const eta = formatEta();
+					return eta ? `${lastLabel} · elapsed ${elapsed} · eta ${eta}` : `${lastLabel} · elapsed ${elapsed}`;
+				};
+				if (!syncFn) {
+					defaultRuntime.log("Memory backend does not support manual reindex.");
+					return;
+				}
+				await withProgressTotals({
+					label: "Indexing memory…",
+					total: 0,
+					fallback: opts.verbose ? "line" : void 0
+				}, async (update, progress) => {
+					const interval = setInterval(() => {
+						progress.setLabel(buildLabel());
+					}, 1e3);
+					try {
+						await syncFn({
+							reason: "cli",
+							force: Boolean(opts.force),
+							progress: (syncUpdate) => {
+								if (syncUpdate.label) lastLabel = syncUpdate.label;
+								lastCompleted = syncUpdate.completed;
+								lastTotal = syncUpdate.total;
+								update({
+									completed: syncUpdate.completed,
+									total: syncUpdate.total,
+									label: buildLabel()
+								});
+								progress.setLabel(buildLabel());
+							}
+						});
+					} finally {
+						clearInterval(interval);
+					}
+				});
+				const qmdIndexSummary = await summarizeQmdIndexArtifact(manager);
+				if (qmdIndexSummary) defaultRuntime.log(qmdIndexSummary);
+				const postIndexStatus = manager.status();
+				const vectorEnabled = postIndexStatus.vector?.enabled ?? false;
+				const vectorAvailable = postIndexStatus.vector?.available;
+				const vectorLoadErr = postIndexStatus.vector?.loadError;
+				if (vectorEnabled && vectorAvailable === false) {
+					const errDetail = vectorLoadErr ? `: ${vectorLoadErr}` : "";
+					defaultRuntime.error(`Memory index WARNING (${agentId}): chunks_vec not updated — sqlite-vec unavailable${errDetail}. Vector recall degraded.`);
+				} else defaultRuntime.log(`Memory index updated (${agentId}).`);
+			} catch (err) {
+				const message = formatErrorMessage(err);
+				defaultRuntime.error(`Memory index failed (${agentId}): ${message}`);
+				process.exitCode = 1;
+			}
+		}
+	});
+}
+async function runMemorySearch(queryArg, opts) {
+	const query = opts.query ?? queryArg;
+	if (!query) {
+		defaultRuntime.error("Missing search query. Provide a positional query or use --query <text>.");
+		process.exitCode = 1;
+		return;
+	}
+	const { config: cfg, diagnostics } = await loadMemoryCommandConfig("memory search");
+	emitMemorySecretResolveDiagnostics(diagnostics, { json: Boolean(opts.json) });
+	const agentId = resolveAgent(cfg, opts.agent);
+	const dreaming = resolveShortTermPromotionDreamingConfig({
+		pluginConfig: resolveMemoryPluginConfig(cfg),
+		cfg
+	});
+	await withMemoryManagerForAgent({
+		cfg,
+		agentId,
+		run: async (manager) => {
+			const sessionKey = buildCliMemorySearchSessionKey(agentId);
+			let results;
+			try {
+				results = await manager.search(query, {
+					maxResults: opts.maxResults,
+					minScore: opts.minScore,
+					sessionKey
+				});
+			} catch (err) {
+				const message = formatErrorMessage(err);
+				defaultRuntime.error(`Memory search failed: ${message}`);
+				process.exitCode = 1;
+				return;
+			}
+			recordShortTermRecalls({
+				workspaceDir: typeof manager.status === "function" ? manager.status().workspaceDir : void 0,
+				query,
+				results,
+				timezone: dreaming.timezone
+			}).catch(() => {});
+			if (opts.json) {
+				defaultRuntime.writeJson({ results });
+				return;
+			}
+			if (results.length === 0) {
+				defaultRuntime.log("No matches.");
+				return;
+			}
+			const rich = isRich();
+			const lines = [];
+			for (const result of results) {
+				lines.push(`${colorize(rich, theme.success, result.score.toFixed(3))} ${colorize(rich, theme.accent, `${shortenHomePath(result.path)}:${result.startLine}-${result.endLine}`)}`);
+				lines.push(colorize(rich, theme.muted, result.snippet));
+				lines.push("");
+			}
+			defaultRuntime.log(lines.join("\n").trim());
+		}
+	});
+}
+async function runMemoryPromote(opts) {
+	const { config: cfg, diagnostics } = await loadMemoryCommandConfig("memory promote");
+	emitMemorySecretResolveDiagnostics(diagnostics, { json: Boolean(opts.json) });
+	const agentId = resolveAgent(cfg, opts.agent);
+	await withMemoryManagerForAgent({
+		cfg,
+		agentId,
+		purpose: "status",
+		run: async (manager) => {
+			const status = manager.status();
+			const workspaceDir = status.workspaceDir?.trim();
+			const dreaming = resolveShortTermPromotionDreamingConfig({
+				pluginConfig: resolveMemoryPluginConfig(cfg),
+				cfg
+			});
+			if (!workspaceDir) {
+				defaultRuntime.error("Memory promote requires a resolvable workspace directory.");
+				process.exitCode = 1;
+				return;
+			}
+			let candidates;
+			try {
+				candidates = await rankShortTermPromotionCandidates({
+					workspaceDir,
+					limit: opts.limit,
+					minScore: opts.minScore ?? dreaming.minScore,
+					minRecallCount: opts.minRecallCount ?? dreaming.minRecallCount,
+					minUniqueQueries: opts.minUniqueQueries ?? dreaming.minUniqueQueries,
+					recencyHalfLifeDays: dreaming.recencyHalfLifeDays,
+					maxAgeDays: dreaming.maxAgeDays,
+					includePromoted: Boolean(opts.includePromoted)
+				});
+			} catch (err) {
+				defaultRuntime.error(`Memory promote ranking failed: ${formatErrorMessage(err)}`);
+				process.exitCode = 1;
+				return;
+			}
+			let applyResult;
+			if (opts.apply) try {
+				applyResult = await applyShortTermPromotions({
+					workspaceDir,
+					candidates,
+					limit: opts.limit,
+					minScore: opts.minScore ?? dreaming.minScore,
+					minRecallCount: opts.minRecallCount ?? dreaming.minRecallCount,
+					minUniqueQueries: opts.minUniqueQueries ?? dreaming.minUniqueQueries,
+					maxAgeDays: dreaming.maxAgeDays,
+					timezone: dreaming.timezone
+				});
+			} catch (err) {
+				defaultRuntime.error(`Memory promote apply failed: ${formatErrorMessage(err)}`);
+				process.exitCode = 1;
+				return;
+			}
+			const storePath = resolveShortTermRecallStorePath(workspaceDir);
+			const lockPath = resolveShortTermRecallLockPath(workspaceDir);
+			const customQmd = asNullableRecord(asNullableRecord(status.custom)?.qmd);
+			const audit = await auditShortTermPromotionArtifacts({
+				workspaceDir,
+				qmd: status.backend === "qmd" ? {
+					dbPath: status.dbPath,
+					collections: typeof customQmd?.collections === "number" ? customQmd.collections : void 0
+				} : void 0
+			});
+			if (opts.json) {
+				defaultRuntime.writeJson({
+					workspaceDir,
+					storePath,
+					lockPath,
+					audit,
+					candidates,
+					apply: applyResult ? {
+						applied: applyResult.applied,
+						appended: applyResult.appended,
+						reconciledExisting: applyResult.reconciledExisting,
+						memoryPath: applyResult.memoryPath,
+						appliedCandidates: applyResult.appliedCandidates
+					} : void 0
+				});
+				return;
+			}
+			if (candidates.length === 0) {
+				defaultRuntime.log("No short-term recall candidates.");
+				defaultRuntime.log(`Recall store: ${shortenHomePath(storePath)}`);
+				if (audit.issues.length > 0) for (const issue of audit.issues) defaultRuntime.log(issue.message);
+				return;
+			}
+			const rich = isRich();
+			const lines = [];
+			lines.push(`${colorize(rich, theme.heading, "Short-Term Promotion Candidates")} ${colorize(rich, theme.muted, `(${agentId})`)}`);
+			lines.push(`${colorize(rich, theme.muted, "Recall store:")} ${shortenHomePath(storePath)}`);
+			lines.push(colorize(rich, theme.muted, `Store health: ${formatAuditCounts(audit)}`));
+			for (const candidate of candidates) {
+				lines.push(`${colorize(rich, theme.success, candidate.score.toFixed(3))} ${colorize(rich, theme.accent, `${shortenHomePath(candidate.path)}:${candidate.startLine}-${candidate.endLine}`)}`);
+				lines.push(colorize(rich, theme.muted, `recalls=${candidate.recallCount} avg=${candidate.avgScore.toFixed(3)} queries=${candidate.uniqueQueries} age=${candidate.ageDays.toFixed(1)}d consolidate=${candidate.components.consolidation.toFixed(2)} conceptual=${candidate.components.conceptual.toFixed(2)}`));
+				if (candidate.conceptTags.length > 0) lines.push(colorize(rich, theme.muted, `concepts=${candidate.conceptTags.join(", ")}`));
+				if (candidate.snippet) lines.push(colorize(rich, theme.muted, candidate.snippet));
+				lines.push("");
+			}
+			if (audit.issues.length > 0) {
+				lines.push(colorize(rich, theme.warn, "Audit issues:"));
+				for (const issue of audit.issues) lines.push(colorize(rich, issue.severity === "error" ? theme.warn : theme.muted, issue.message));
+				lines.push("");
+			}
+			if (applyResult) if (applyResult.applied > 0) {
+				lines.push(colorize(rich, theme.success, `Processed ${applyResult.applied} candidate(s) for ${shortenHomePath(applyResult.memoryPath)}.`));
+				lines.push(colorize(rich, theme.muted, `appended=${applyResult.appended} reconciledExisting=${applyResult.reconciledExisting}`));
+			} else lines.push(colorize(rich, theme.warn, "No candidates met apply criteria."));
+			defaultRuntime.log(lines.join("\n").trim());
+		}
+	});
+}
+async function runMemoryPromoteExplain(selectorArg, opts) {
+	const selector = selectorArg?.trim();
+	if (!selector) {
+		defaultRuntime.error("Memory promote-explain requires a non-empty selector.");
+		process.exitCode = 1;
+		return;
+	}
+	const { config: cfg, diagnostics } = await loadMemoryCommandConfig("memory promote-explain");
+	emitMemorySecretResolveDiagnostics(diagnostics, { json: Boolean(opts.json) });
+	const agentId = resolveAgent(cfg, opts.agent);
+	await withMemoryManagerForAgent({
+		cfg,
+		agentId,
+		purpose: "status",
+		run: async (manager) => {
+			const workspaceDir = manager.status().workspaceDir?.trim();
+			const dreaming = resolveShortTermPromotionDreamingConfig({
+				pluginConfig: resolveMemoryPluginConfig(cfg),
+				cfg
+			});
+			if (!workspaceDir) {
+				defaultRuntime.error("Memory promote-explain requires a resolvable workspace directory.");
+				process.exitCode = 1;
+				return;
+			}
+			let candidates;
+			try {
+				candidates = await rankShortTermPromotionCandidates({
+					workspaceDir,
+					minScore: 0,
+					minRecallCount: 0,
+					minUniqueQueries: 0,
+					includePromoted: Boolean(opts.includePromoted),
+					recencyHalfLifeDays: dreaming.recencyHalfLifeDays,
+					maxAgeDays: dreaming.maxAgeDays
+				});
+			} catch (err) {
+				defaultRuntime.error(`Memory promote-explain failed: ${formatErrorMessage(err)}`);
+				process.exitCode = 1;
+				return;
+			}
+			const candidate = candidates.find((entry) => matchesPromotionSelector(entry, selector));
+			if (!candidate) {
+				defaultRuntime.error(`No promotion candidate matched "${selector}".`);
+				process.exitCode = 1;
+				return;
+			}
+			const thresholds = {
+				minScore: dreaming.minScore,
+				minRecallCount: dreaming.minRecallCount,
+				minUniqueQueries: dreaming.minUniqueQueries,
+				maxAgeDays: dreaming.maxAgeDays ?? null
+			};
+			if (opts.json) {
+				defaultRuntime.writeJson({
+					workspaceDir,
+					thresholds,
+					candidate,
+					passes: {
+						score: candidate.score >= thresholds.minScore,
+						recallCount: candidate.recallCount >= thresholds.minRecallCount,
+						uniqueQueries: candidate.uniqueQueries >= thresholds.minUniqueQueries,
+						maxAge: thresholds.maxAgeDays === null ? true : candidate.ageDays <= thresholds.maxAgeDays
+					}
+				});
+				return;
+			}
+			const rich = isRich();
+			const lines = [
+				`${colorize(rich, theme.heading, "Promotion Explain")} ${colorize(rich, theme.muted, "(" + agentId + ")")}`,
+				colorize(rich, theme.accent, candidate.key),
+				colorize(rich, theme.muted, `${shortenHomePath(candidate.path)}:${String(candidate.startLine)}-${String(candidate.endLine)}`),
+				candidate.snippet,
+				colorize(rich, theme.muted, `score=${candidate.score.toFixed(3)} recallCount=${candidate.recallCount} uniqueQueries=${candidate.uniqueQueries} ageDays=${candidate.ageDays.toFixed(1)}`),
+				colorize(rich, theme.muted, `components: frequency=${candidate.components.frequency.toFixed(2)} relevance=${candidate.components.relevance.toFixed(2)} diversity=${candidate.components.diversity.toFixed(2)} recency=${candidate.components.recency.toFixed(2)} consolidation=${candidate.components.consolidation.toFixed(2)} conceptual=${candidate.components.conceptual.toFixed(2)}`),
+				colorize(rich, theme.muted, `thresholds: minScore=${thresholds.minScore} minRecallCount=${thresholds.minRecallCount} minUniqueQueries=${thresholds.minUniqueQueries} maxAgeDays=${thresholds.maxAgeDays ?? "none"}`)
+			];
+			if (candidate.conceptTags.length > 0) lines.push(colorize(rich, theme.muted, `concepts=${candidate.conceptTags.join(", ")}`));
+			defaultRuntime.log(lines.join("\n"));
+		}
+	});
+}
+async function runMemoryRemHarness(opts) {
+	const { config: cfg, diagnostics } = await loadMemoryCommandConfig("memory rem-harness");
+	emitMemorySecretResolveDiagnostics(diagnostics, { json: Boolean(opts.json) });
+	const agentId = resolveAgent(cfg, opts.agent);
+	await withMemoryManagerForAgent({
+		cfg,
+		agentId,
+		purpose: "status",
+		run: async (manager) => {
+			const managerWorkspaceDir = manager.status().workspaceDir?.trim();
+			const pluginConfig = resolveMemoryPluginConfig(cfg);
+			const deep = resolveShortTermPromotionDreamingConfig({
+				pluginConfig,
+				cfg
+			});
+			if (!managerWorkspaceDir && !opts.path) {
+				defaultRuntime.error("Memory rem-harness requires a resolvable workspace directory.");
+				process.exitCode = 1;
+				return;
+			}
+			const remConfig = resolveMemoryRemDreamingConfig({
+				pluginConfig,
+				cfg
+			});
+			const nowMs = Date.now();
+			let workspaceDir = managerWorkspaceDir ?? "";
+			let sourceFiles = [];
+			let groundedInputPaths = [];
+			let importedFileCount = 0;
+			let importedSignalCount = 0;
+			let skippedPaths = [];
+			let cleanupWorkspaceDir = null;
+			if (opts.path) {
+				const historical = await createHistoricalRemHarnessWorkspace({
+					inputPath: opts.path,
+					remLimit: remConfig.limit,
+					nowMs,
+					timezone: remConfig.timezone
+				});
+				workspaceDir = historical.workspaceDir;
+				cleanupWorkspaceDir = historical.workspaceDir;
+				sourceFiles = historical.sourceFiles;
+				groundedInputPaths = historical.workspaceSourceFiles;
+				importedFileCount = historical.importedFileCount;
+				importedSignalCount = historical.importedSignalCount;
+				skippedPaths = historical.skippedPaths;
+				if (sourceFiles.length === 0) {
+					await fs$1.rm(historical.workspaceDir, {
+						recursive: true,
+						force: true
+					});
+					defaultRuntime.error(`Memory rem-harness found no YYYY-MM-DD.md files at ${shortenHomePath(path.resolve(opts.path))}.`);
+					process.exitCode = 1;
+					return;
+				}
+			}
+			if (!workspaceDir) {
+				defaultRuntime.error("Memory rem-harness requires a resolvable workspace directory.");
+				process.exitCode = 1;
+				return;
+			}
+			try {
+				if (groundedInputPaths.length === 0 && opts.grounded) groundedInputPaths = await listWorkspaceDailyFiles(workspaceDir, remConfig.limit);
+				const cutoffMs = nowMs - Math.max(0, remConfig.lookbackDays) * 24 * 60 * 60 * 1e3;
+				const recallEntries = (await readShortTermRecallEntries({
+					workspaceDir,
+					nowMs
+				})).filter((entry) => Date.parse(entry.lastRecalledAt) >= cutoffMs);
+				const remPreview = previewRemDreaming({
+					entries: recallEntries,
+					limit: remConfig.limit,
+					minPatternStrength: remConfig.minPatternStrength
+				});
+				const groundedPreview = opts.grounded && groundedInputPaths.length > 0 ? await previewGroundedRemMarkdown({
+					workspaceDir,
+					inputPaths: groundedInputPaths
+				}) : null;
+				const deepCandidates = await rankShortTermPromotionCandidates({
+					workspaceDir,
+					minScore: 0,
+					minRecallCount: 0,
+					minUniqueQueries: 0,
+					includePromoted: Boolean(opts.includePromoted),
+					recencyHalfLifeDays: deep.recencyHalfLifeDays,
+					maxAgeDays: deep.maxAgeDays
+				});
+				if (opts.json) {
+					defaultRuntime.writeJson({
+						workspaceDir,
+						sourcePath: opts.path ? path.resolve(opts.path) : null,
+						sourceFiles,
+						historicalImport: opts.path ? {
+							importedFileCount,
+							importedSignalCount,
+							skippedPaths
+						} : null,
+						remConfig,
+						deepConfig: {
+							minScore: deep.minScore,
+							minRecallCount: deep.minRecallCount,
+							minUniqueQueries: deep.minUniqueQueries,
+							recencyHalfLifeDays: deep.recencyHalfLifeDays,
+							maxAgeDays: deep.maxAgeDays ?? null
+						},
+						rem: remPreview,
+						grounded: groundedPreview,
+						deep: {
+							candidateCount: deepCandidates.length,
+							candidates: deepCandidates
+						}
+					});
+					return;
+				}
+				const rich = isRich();
+				const lines = [
+					`${colorize(rich, theme.heading, "REM Harness")} ${colorize(rich, theme.muted, `(${agentId})`)}`,
+					colorize(rich, theme.muted, `workspace=${shortenHomePath(workspaceDir)}`),
+					...opts.path ? [
+						colorize(rich, theme.muted, `sourcePath=${shortenHomePath(path.resolve(opts.path))}`),
+						colorize(rich, theme.muted, `historicalFiles=${sourceFiles.length} importedFiles=${importedFileCount} importedSignals=${importedSignalCount}`),
+						...skippedPaths.length > 0 ? [colorize(rich, theme.warn, `skipped=${skippedPaths.map((entry) => shortenHomePath(entry)).join(", ")}`)] : []
+					] : [],
+					...opts.grounded ? [colorize(rich, theme.muted, `groundedInputs=${groundedInputPaths.length > 0 ? groundedInputPaths.map((entry) => shortenHomePath(entry)).join(", ") : "none"}`)] : [],
+					colorize(rich, theme.muted, `recentRecallEntries=${recallEntries.length} deepCandidates=${deepCandidates.length}`),
+					"",
+					colorize(rich, theme.heading, "REM Preview"),
+					...remPreview.bodyLines,
+					...groundedPreview ? [
+						"",
+						colorize(rich, theme.heading, "Grounded REM"),
+						...groundedPreview.files.flatMap((file) => [
+							colorize(rich, theme.muted, file.path),
+							file.renderedMarkdown,
+							""
+						])
+					] : [],
+					"",
+					colorize(rich, theme.heading, "Deep Candidates"),
+					...deepCandidates.length > 0 ? deepCandidates.slice(0, 10).map((candidate) => `${candidate.score.toFixed(3)} ${candidate.snippet} [${shortenHomePath(candidate.path)}:${candidate.startLine}-${candidate.endLine}]`) : ["- No deep candidates."]
+				];
+				defaultRuntime.log(lines.join("\n"));
+			} finally {
+				if (cleanupWorkspaceDir) await fs$1.rm(cleanupWorkspaceDir, {
+					recursive: true,
+					force: true
+				});
+			}
+		}
+	});
+}
+async function runMemoryRemBackfill(opts) {
+	const { config: cfg, diagnostics } = await loadMemoryCommandConfig("memory rem-backfill");
+	emitMemorySecretResolveDiagnostics(diagnostics, { json: Boolean(opts.json) });
+	const agentId = resolveAgent(cfg, opts.agent);
+	await withMemoryManagerForAgent({
+		cfg,
+		agentId,
+		purpose: "status",
+		run: async (manager) => {
+			const workspaceDir = manager.status().workspaceDir?.trim();
+			const remConfig = resolveMemoryRemDreamingConfig({
+				pluginConfig: resolveMemoryPluginConfig(cfg),
+				cfg
+			});
+			if (!workspaceDir) {
+				defaultRuntime.error("Memory rem-backfill requires a resolvable workspace directory.");
+				process.exitCode = 1;
+				return;
+			}
+			if (opts.rollback || opts.rollbackShortTerm) {
+				const diaryRollback = opts.rollback ? await removeBackfillDiaryEntries({ workspaceDir }) : null;
+				const shortTermRollback = opts.rollbackShortTerm ? await removeGroundedShortTermCandidates({ workspaceDir }) : null;
+				if (opts.json) {
+					defaultRuntime.writeJson({
+						workspaceDir,
+						rollback: Boolean(opts.rollback),
+						rollbackShortTerm: Boolean(opts.rollbackShortTerm),
+						...diaryRollback ? {
+							dreamsPath: diaryRollback.dreamsPath,
+							removedEntries: diaryRollback.removed
+						} : {},
+						...shortTermRollback ? {
+							shortTermStorePath: shortTermRollback.storePath,
+							removedShortTermEntries: shortTermRollback.removed
+						} : {}
+					});
+					return;
+				}
+				defaultRuntime.log([
+					`${colorize(isRich(), theme.heading, "REM Backfill")} ${colorize(isRich(), theme.muted, "(rollback)")}`,
+					colorize(isRich(), theme.muted, `workspace=${shortenHomePath(workspaceDir)}`),
+					...diaryRollback ? [colorize(isRich(), theme.muted, `dreamsPath=${shortenHomePath(diaryRollback.dreamsPath)}`), colorize(isRich(), theme.muted, `removedEntries=${diaryRollback.removed}`)] : [],
+					...shortTermRollback ? [colorize(isRich(), theme.muted, `shortTermStorePath=${shortenHomePath(shortTermRollback.storePath)}`), colorize(isRich(), theme.muted, `removedShortTermEntries=${shortTermRollback.removed}`)] : []
+				].join("\n"));
+				return;
+			}
+			if (!opts.path) {
+				defaultRuntime.error("Memory rem-backfill requires --path <file-or-dir> unless using --rollback.");
+				process.exitCode = 1;
+				return;
+			}
+			const scratchDir = await fs$1.mkdtemp(path.join(resolvePreferredGenesisTmpDir(), "genesis-rem-backfill-"));
+			try {
+				const sourceFiles = await listHistoricalDailyFiles(opts.path);
+				if (sourceFiles.length === 0) {
+					defaultRuntime.error(`Memory rem-backfill found no YYYY-MM-DD.md files at ${shortenHomePath(path.resolve(opts.path))}.`);
+					process.exitCode = 1;
+					return;
+				}
+				const scratchMemoryDir = path.join(scratchDir, "memory");
+				await fs$1.mkdir(scratchMemoryDir, { recursive: true });
+				const workspaceSourceFiles = [];
+				for (const filePath of sourceFiles) {
+					const dst = path.join(scratchMemoryDir, path.basename(filePath));
+					await fs$1.copyFile(filePath, dst);
+					workspaceSourceFiles.push(dst);
+				}
+				const grounded = await previewGroundedRemMarkdown({
+					workspaceDir: scratchDir,
+					inputPaths: workspaceSourceFiles
+				});
+				const sourcePathByDay = new Map(sourceFiles.map((sourcePath) => [extractIsoDayFromPath(sourcePath), sourcePath]).filter((entry) => Boolean(entry[0])));
+				const written = await writeBackfillDiaryEntries({
+					workspaceDir,
+					entries: grounded.files.map((file) => {
+						const isoDay = extractIsoDayFromPath(file.path);
+						if (!isoDay) return null;
+						return {
+							isoDay,
+							sourcePath: sourcePathByDay.get(isoDay) ?? file.path,
+							bodyLines: groundedMarkdownToDiaryLines(file.renderedMarkdown)
+						};
+					}).filter((entry) => entry !== null),
+					timezone: remConfig.timezone
+				});
+				let stagedShortTermEntries = 0;
+				let replacedShortTermEntries = 0;
+				if (opts.stageShortTerm) {
+					replacedShortTermEntries = (await removeGroundedShortTermCandidates({ workspaceDir })).removed;
+					const shortTermSeedItems = collectGroundedShortTermSeedItems(grounded.files);
+					if (shortTermSeedItems.length > 0) await recordGroundedShortTermCandidates({
+						workspaceDir,
+						query: "__dreaming_grounded_backfill__",
+						items: shortTermSeedItems,
+						dedupeByQueryPerDay: true,
+						nowMs: Date.now(),
+						timezone: remConfig.timezone
+					});
+					stagedShortTermEntries = shortTermSeedItems.length;
+				}
+				if (opts.json) {
+					defaultRuntime.writeJson({
+						workspaceDir,
+						sourcePath: path.resolve(opts.path),
+						sourceFiles,
+						groundedFiles: grounded.scannedFiles,
+						writtenEntries: written.written,
+						replacedEntries: written.replaced,
+						dreamsPath: written.dreamsPath,
+						...opts.stageShortTerm ? {
+							stagedShortTermEntries,
+							replacedShortTermEntries
+						} : {}
+					});
+					return;
+				}
+				const rich = isRich();
+				defaultRuntime.log([
+					`${colorize(rich, theme.heading, "REM Backfill")} ${colorize(rich, theme.muted, `(${agentId})`)}`,
+					colorize(rich, theme.muted, `workspace=${shortenHomePath(workspaceDir)}`),
+					colorize(rich, theme.muted, `sourcePath=${shortenHomePath(path.resolve(opts.path))}`),
+					colorize(rich, theme.muted, `historicalFiles=${sourceFiles.length} writtenEntries=${written.written} replacedEntries=${written.replaced}`),
+					...opts.stageShortTerm ? [colorize(rich, theme.muted, `stagedShortTermEntries=${stagedShortTermEntries} replacedShortTermEntries=${replacedShortTermEntries}`)] : [],
+					colorize(rich, theme.muted, `dreamsPath=${shortenHomePath(written.dreamsPath)}`)
+				].join("\n"));
+			} finally {
+				await fs$1.rm(scratchDir, {
+					recursive: true,
+					force: true
+				});
+			}
+		}
+	});
+}
+//#endregion
+export { runMemoryIndex, runMemoryPromote, runMemoryPromoteExplain, runMemoryRemBackfill, runMemoryRemHarness, runMemorySearch, runMemoryStatus };