@pih/esm-pathology-app 1.0.7 → 1.1.1-pre.22

package/src/pathology-report/ReportComponent.tsx

@@ -1,490 +1,53 @@
 import React from "react";
-import { useConfig } from "@openmrs/esm-framework";
-import cloneDeep from "lodash-es/cloneDeep";
-import DataTable, {
-  Table,
-  TableHead,
-  TableRow,
-  TableHeader,
-  TableBody,
-  TableCell,
-} from "carbon-components-react/es/components/DataTable";
-import { PDFDownloadLink, PDFViewer } from "@react-pdf/renderer";
-
 import styles from "./ReportComponent.css";
-import {
-  getUserLocation,
-  getConceptAnswers,
-  getLocations,
-  getEncounters,
-  postSampleDropoffObs,
-  voidSampleDropoff,
-  postSampleStatusChangeObs,
-  updateSampleStatusChangeObs,
-  postReferralStatusChangeObs,
-  updateReferralStatusChangeObs,
-  EncounterResult,
-  getUser,
-  Concept,
-  getEncounter,
-} from "./ReportComponent.resource";
-import MyDocument from "../Print-to-PDF/Document-Component";
-import { Config } from "../config-schema";
+import TableRow from "./TableRow";
+import getPatientEncounters from "../Pathology-getter/Pathology-patient-encounters-getter-resource";
+import getEncounters from "../Pathology-getter/Pathology-encounter-getter-resource";
 
 const ReportComponent = () => {
-  const config = useConfig() as Config;
-  const [userLocation, setUserLocation] = React.useState();
-  const [encountersList, setEncountersList] = React.useState<
-    Array<EncounterResult>
-  >([]);
-  const [sendingHospital, setSendingHospital] = React.useState("");
-  const [listOfHospitals, setListOfHospitals] = React.useState([]);
-  const [sampleStatusAnswers, setSampleStatusAnswers] = React.useState<
-    Array<Concept>
-  >([]);
-  const [referralStatusAnswers, setReferralStatusAnswers] = React.useState<
-    Array<Concept>
-  >([]);
-  const [sampleStatus, setSampleStatus] = React.useState("");
-  const [referralStatus, setReferralStatus] = React.useState("");
-  const [patientName, setPatientName] = React.useState("");
-  const headers = [
-    {
-      key: "patientNames",
-      header: "Patient name",
-    },
-    {
-      key: "pathologyRequest",
-      header: "pathology request",
-    },
-    {
-      key: "sendingHospital",
-      header: "Sending Hospital",
-    },
-    {
-      key: "phoneNumber",
-      header: "Phone number",
-    },
-    {
-      key: "sampleStatus",
-      header: "Sample status",
-    },
-    {
-      key: "dateOfRequest",
-      header: "Date of Request",
-    },
-    {
-      key: "referralStatus",
-      header: "Referral status",
-    },
-    {
-      key: "sampleDropOff",
-      header: "Sample drop off?",
-    },
-    {
-      key: "pathologicDiagnosisObs",
-      header: "Pathologic diagnosis",
-    },
-    {
-      key: "resultsEncounter",
-      header: "Results",
-    },
-    {
-      key: "PDFReport",
-      header: "Report",
-    },
-  ];
+  const [encountersList, setEncountersList] = React.useState([]);
+  // const [selectedEncounter, setSelectedEncounter] = React.useState();
+  let selectedEncounter;
 
   React.useEffect(() => {
-    getUserLocation(config.healthCenterAttrTypeUUID).then(setUserLocation);
-    getLocations().then(setListOfHospitals);
-    getConceptAnswers(config.sampleStatusConceptUUID).then(
-      setSampleStatusAnswers
-    );
-    getConceptAnswers(config.referralStatusConceptUUID).then(
-      setReferralStatusAnswers
-    );
-    getEncounters(
-      config.healthCenterAttrTypeUUID,
-      config.pathologyFullAllowedLocationUUID
-    ).then(setEncountersList);
+    getPatientEncounters("").then((encs) => {
+      setEncountersList(encs.data.results);
+    });
   }, []);
 
-  const filteredEncList = encountersList
-    .filter(
-      (encList) =>
-        !sampleStatus ||
-        encList.sampleStatusObs?.toLowerCase() == sampleStatus.toLowerCase()
-    )
-    .filter(
-      (encList) =>
-        !referralStatus ||
-        encList.referralStatusObs?.toLowerCase() == referralStatus.toLowerCase()
-    )
-    .filter(
-      (encList) =>
-        !sendingHospital ||
-        encList.patientHealthCenter?.toLowerCase() ==
-          sendingHospital.toLowerCase()
-    )
-    .filter((encList) => {
-      if (!patientName) {
-        return true;
-      } else {
-        // Given a patient name filter input, break it up into tokens.
-        // Filter to patients for which each token matches.
-        // Matching is case-insensitive and matches the beginning of each name.
-        const nameTokens = patientName.split(/\s+/);
-        const name = `${encList.family_name} ${encList.middle_name} ${encList.given_name}`;
-        return nameTokens.every((token) =>
-          new RegExp("\\b" + token, "i").test(name)
-        );
-      }
+  const encounterInfo = (encUUID) => {
+    getEncounters(encUUID).then((enc) => {
+      return enc.data;
     });
-
-  const rows = filteredEncList.map((encounterInfo) => {
-    return {
-      id: encounterInfo.encounterId,
-      patientNames: (
-        <a
-          data-testid="patientNames"
-          href={`/openmrs/patientDashboard.form?patientId=${encounterInfo.personId}`}
-        >
-          {encounterInfo.family_name}
-          {"  "}
-          {encounterInfo.given_name}
-          {"  "}
-          {encounterInfo.middle_name}
-        </a>
-      ),
-      pathologyRequest: (
-        <a
-          href={`/openmrs/module/htmlformentry/htmlFormEntry.form?encounterId=${encounterInfo.encounterId}&mode=VIEW`}
-        >
-          {" "}
-          Link{" "}
-        </a>
-      ),
-      sendingHospital: encounterInfo.patientHealthCenter,
-      phoneNumber: encounterInfo.patientPhoneNumber || "",
-      sampleStatus: (
-        <select
-          onChange={(e) =>
-            sampleStatusChange(
-              {
-                uuid: e.target.value,
-                display: e.target.options[e.target.selectedIndex].text,
-              },
-              encounterInfo
-            )
-          }
-        >
-          <option value=""></option>
-          {sampleStatusAnswers.map((ans) => (
-            <option
-              data-testid="sampleStatus-option"
-              value={ans.uuid}
-              key={ans.uuid}
-              selected={
-                encounterInfo.sampleStatusObs
-                  ? encounterInfo.sampleStatusObs === ans.display && true
-                  : false
-              }
-            >
-              {ans.display}
-            </option>
-          ))}
-        </select>
-      ),
-      dateOfRequest: new Date(encounterInfo.encounterDatetime).toLocaleString(
-        ["en-GB", "en-US", "en", "fr-RW"],
-        { day: "numeric", month: "numeric", year: "numeric" }
-      ),
-      referralStatus: (
-        <select
-          onChange={(e) =>
-            referralStatusChange(
-              {
-                uuid: e.target.value,
-                display: e.target.options[e.target.selectedIndex].text,
-              },
-              encounterInfo
-            )
-          }
-        >
-          <option data-testid="referralStatus-option" value=""></option>
-          {referralStatusAnswers.map((ans) => (
-            <option
-              value={ans.uuid}
-              key={ans.uuid}
-              selected={
-                encounterInfo.referralStatusObs &&
-                encounterInfo.referralStatusObs === ans.display
-              }
-            >
-              {ans.display}
-            </option>
-          ))}
-        </select>
-      ),
-      sampleDropOff: (
-        <input
-          data-testid="sampleDropOff"
-          type="checkbox"
-          checked={Boolean(encounterInfo.sampleDropoffObs)}
-          onChange={(e) => sampleDropOffChange(encounterInfo)}
-        />
-      ),
-      pathologicDiagnosisObs: encounterInfo.pathologicDiagnosisObs,
-      resultsEncounter: encounterInfo.resultsEncounterId ? (
-        <a
-          data-testid="resultsEncounter"
-          href={`/openmrs/module/htmlformentry/htmlFormEntry.form?encounterId=${encounterInfo.resultsEncounterId}&mode=VIEW`}
-        >
-          {" "}
-          Results{" "}
-        </a>
-      ) : (
-        (!userLocation ||
-          userLocation === config.pathologyFullAllowedLocationUUID) && (
-          <a
-            href={`/openmrs/module/htmlformentry/htmlFormEntry.form?personId=${encounterInfo.personId}&patientId=${encounterInfo.personId}&returnUrl=&formId=${config.pathologyResultsFromID}&uuid=${encounterInfo.encounterUuid}`}
-          >
-            {" "}
-            Fill in results{" "}
-          </a>
-        )
-      ),
-      PDFReport: encounterInfo.resultsEncounterId &&
-        encounterInfo.approvedBy && (
-          <PDFDownloadLink
-            document={
-              <MyDocument encounterInfo={encounterInfo} config={config} />
-            }
-            fileName="Pathology Report"
-          >
-            {({ loading }) =>
-              loading ? "loading..." : <button>Download</button>
-            }
-          </PDFDownloadLink>
-        ),
-    };
-  });
-
-  const sampleDropOffChange = (encounterInfo) => {
-    const tempEncList = cloneDeep(encountersList);
-    if (!encounterInfo.sampleDropoffObs) {
-      postSampleDropoffObs(
-        encounterInfo,
-        config.sampleDropOffconceptUUID,
-        config.healthCenterAttrTypeUUID,
-        config.yesConceptUUID
-      ).then((response) => {
-        if (response.ok) {
-          const encIndex = tempEncList.findIndex(
-            (enc) => enc.encounterUuid == encounterInfo.encounterUuid
-          );
-          tempEncList[encIndex].sampleDropoffObs = config.yesConceptName;
-          tempEncList[encIndex].sampleDropoffObsUuid = response.data.uuid;
-          setEncountersList(tempEncList);
-        }
-      });
-    } else {
-      voidSampleDropoff(encounterInfo.sampleDropoffObsUuid).then((response) => {
-        if (response.ok) {
-          const encIndex = tempEncList.findIndex(
-            (enc) => enc.encounterUuid == encounterInfo.encounterUuid
-          );
-          tempEncList[encIndex].sampleDropoffObs = "";
-          tempEncList[encIndex].sampleDropoffObsUuid = "";
-          setEncountersList(tempEncList);
-        }
-      });
-    }
-  };
-
-  const sampleStatusChange = (
-    newStatus: { uuid: string; display: string },
-    encounterInfo
-  ) => {
-    const tempEncList = cloneDeep(encountersList);
-    if (!encounterInfo.sampleStatusObs) {
-      postSampleStatusChangeObs(
-        newStatus.uuid,
-        encounterInfo,
-        config.sampleStatusConceptUUID,
-        config.healthCenterAttrTypeUUID
-      ).then((response) => {
-        if (response.ok) {
-          const encIndex = tempEncList.findIndex(
-            (enc) => enc.encounterUuid == encounterInfo.encounterUuid
-          );
-          tempEncList[encIndex].sampleStatusObs = newStatus.display;
-          tempEncList[encIndex].sampleStatusObsUuid = response.data.uuid;
-
-          setEncountersList(tempEncList);
-        } else {
-          setEncountersList(tempEncList);
-          //Need error message
-        }
-      });
-    } else {
-      updateSampleStatusChangeObs(
-        newStatus,
-        encounterInfo,
-        config.sampleStatusConceptUUID,
-        config.healthCenterAttrTypeUUID
-      ).then((response) => {
-        if (response.ok) {
-          const encIndex = tempEncList.findIndex(
-            (enc) => enc.encounterUuid == encounterInfo.encounterUuid
-          );
-          tempEncList[encIndex].sampleStatusObs = newStatus.display;
-          tempEncList[encIndex].sampleStatusObsUuid = response.data.uuid;
-          setEncountersList(tempEncList);
-        } else {
-          setEncountersList(tempEncList);
-          //Need error message
-        }
-      });
-    }
-  };
-
-  const referralStatusChange = (targetedElem, encounterInfo) => {
-    const tempEncList = cloneDeep(encountersList);
-    if (!encounterInfo.referralStatusObs) {
-      postReferralStatusChangeObs(
-        targetedElem.uuid,
-        encounterInfo,
-        config.referralStatusConceptUUID,
-        config.healthCenterAttrTypeUUID
-      ).then((response) => {
-        if (response.ok) {
-          const encIndex = tempEncList.findIndex(
-            (enc) => enc.encounterUuid == encounterInfo.encounterUuid
-          );
-          tempEncList[encIndex].referralStatusObs = targetedElem.display;
-          tempEncList[encIndex].referralStatusObsUuid = response.data.uuid;
-          setEncountersList(tempEncList);
-        } else {
-          setEncountersList(tempEncList);
-          //Need error message
-        }
-      });
-    } else {
-      updateReferralStatusChangeObs(
-        targetedElem,
-        encounterInfo,
-        config.referralStatusConceptUUID,
-        config.healthCenterAttrTypeUUID
-      ).then((response) => {
-        if (response.ok) {
-          const encIndex = tempEncList.findIndex(
-            (enc) => enc.encounterUuid == encounterInfo.encounterUuid
-          );
-          tempEncList[encIndex].referralStatusObs = targetedElem.display;
-          tempEncList[encIndex].referralStatusObsUuid = response.data.uuid;
-          setEncountersList(tempEncList);
-        } else {
-          setEncountersList(tempEncList);
-          //Need error message
-        }
-      });
-    }
   };
 
   return (
-    <div>
-      <div className={styles.filtersContainer}>
-        <label htmlFor="sending-hospital">Sending Hospital </label>
-        <select
-          id="sending-hospital"
-          className={styles.dropdown}
-          value={sendingHospital}
-          onChange={(e) => setSendingHospital(e.target.value)}
-        >
-          <option value=""></option>
-          {listOfHospitals.map((loc) =>
-            userLocation &&
-            userLocation !== config.pathologyFullAllowedLocationUUID ? (
-              loc.uuid === userLocation ? (
-                <option value={loc.display} key={loc.uuid}>
-                  {loc.display}
-                </option>
-              ) : null
-            ) : (
-              <option value={loc.display} key={loc.uuid}>
-                {loc.display}
-              </option>
-            )
-          )}
-        </select>
-        <label htmlFor="sample-status">Sample Status </label>
-        <select
-          id="sample-status"
-          className={styles.dropdown}
-          value={sampleStatus}
-          onChange={(e) => setSampleStatus(e.target.value)}
-        >
-          <option value=""></option>
-          {sampleStatusAnswers.map((ans) => (
-            <option value={ans.display} key={ans.uuid}>
-              {ans.display}
-            </option>
-          ))}
-        </select>
-        <label htmlFor="referral-status">Referral Status </label>
-        <select
-          id="referral-status"
-          className={styles.dropdown}
-          value={referralStatus}
-          onChange={(e) => setReferralStatus(e.target.value)}
-        >
-          <option value=""></option>
-          {referralStatusAnswers.map((ans) => (
-            <option value={ans.display} key={ans.uuid}>
-              {ans.display}
-            </option>
-          ))}
-        </select>
-
-        <label htmlFor="patient-name">Patient Name </label>
-        <input
-          id="patient-name"
-          className={styles.textBox}
-          type="text"
-          onChange={(e) => setPatientName(e.target.value)}
-        />
-      </div>
-      {console.log(encountersList)}
-      <div className={styles.tableContainer}>
-        <DataTable rows={rows} headers={headers}>
-          {({ rows, headers, getTableProps, getHeaderProps, getRowProps }) => (
-            <Table {...getTableProps()}>
-              <TableHead>
-                <TableRow>
-                  {headers.map((header) => (
-                    <TableHeader {...getHeaderProps({ header })}>
-                      {header.header}
-                    </TableHeader>
-                  ))}
-                </TableRow>
-              </TableHead>
-              <TableBody>
-                {rows.map((row) => (
-                  <TableRow {...getRowProps({ row })}>
-                    {row.cells.map((cell) => (
-                      <TableCell key={cell.id}>{cell.value}</TableCell>
-                    ))}
-                  </TableRow>
-                ))}
-              </TableBody>
-            </Table>
-          )}
-        </DataTable>
-      </div>
-      <div></div>
-    </div>
+    <table className={styles.table}>
+      <thead>
+        <tr className={`omrs-bold ${styles.tr}`}>
+          <td>Link to patient</td>
+          <td>Patient name</td>
+          <td>pathology request</td>
+          <td>Phone number</td>
+          <td>Sample status</td>
+          <td>Date of Request</td>
+          <td>Referral status</td>
+          <td>Sample drop off?</td>
+        </tr>
+      </thead>
+      <tbody>
+        {encountersList.map((request) => (
+          // foo.results.find(item => item.id === 2)
+
+          <tr className={styles.tr} key={request.uuid}>
+            <TableRow
+              request={request}
+              encounterInfo={encounterInfo(request.uuid)}
+            />
+          </tr>
+        ))}
+      </tbody>
+    </table>
   );
 };
 

package/src/pathology-report/TableRow.tsx

@@ -0,0 +1,24 @@
+import React from "react";
+
+const TableRow = (prop) => {
+  return (
+    <>
+      <td>Link</td>
+      <td>
+        {/* {prop.patient.family_name} {' '}
+                {prop.patient.middle_name} {' '}
+                {prop.patient.first_name} {' '} */}
+      </td>
+      <td>Link</td>
+      <td>{/* {prop.patient.phone_number} */}</td>
+      <td>arrived at BDH</td>
+      <td>{prop.encounterInfo.encounterDatetime}</td>
+      <td>-</td>
+      <td>
+        <input type="checkbox" />
+      </td>
+    </>
+  );
+};
+
+export default TableRow;

package/src/pathology.test.tsx

@@ -0,0 +1,32 @@
+/**
+ * This is the root test for this page. It simply checks that the page
+ * renders. If the components of your page are highly interdependent,
+ * (e.g., if the `Hello` component had state that communicated
+ * information between `Greeter` and `PatientGetter`) then you might
+ * want to do most of your testing here. If those components are
+ * instead quite independent (as is the case in this example), then
+ * it would make more sense to test those components independently.
+ *
+ * The key thing to remember, always, is: write tests that behave like
+ * users. They should *look* for elements by their visual
+ * characteristics, *interact* with them, and (mostly) *assert* based
+ * on things that would be visually apparent to a user.
+ *
+ * To learn more about how we do testing, see the following resources:
+ *   https://kentcdodds.com/blog/how-to-know-what-to-test
+ *   https://kentcdodds.com/blog/testing-implementation-details
+ *   https://kentcdodds.com/blog/common-mistakes-with-react-testing-library
+ *
+ * Kent C. Dodds is the inventor of `@testing-library`:
+ *   https://testing-library.com/docs/guiding-principles
+ */
+import React from "react";
+import { render, cleanup } from "@testing-library/react";
+import PathologySystem from "./PathologySystem";
+
+describe(`<PathologySystem />`, () => {
+  afterEach(cleanup);
+  it(`renders without dying`, () => {
+    render(<PathologySystem />);
+  });
+});

package/tsconfig.json

@@ -1,23 +1,5 @@
 {
-  "compilerOptions": {
-    "esModuleInterop": true,
-    "module": "esnext",
-    "allowSyntheticDefaultImports": true,
-    "jsx": "react",
-    "moduleResolution": "node",
-    "resolveJsonModule": true,
-    "lib": [
-      "dom",
-      "es5",
-      "scripthost",
-      "es2015",
-      "es2015.promise",
-      "es2016.array.include",
-      "es2018",
-      "es2020"
-    ],
-    "noEmit": true
-  },
+  "extends": "../../tsconfig.json",
   "include": ["src/**/*"],
   "exclude": ["src/**/*.test.tsx", "src/**/*.outdated.tsx"]
 }

package/webpack.config.js

@@ -1,30 +1 @@
-
-const config = require("openmrs/default-webpack-config");
-const webpack = require("webpack");
-
-config.additionalConfig.resolve = {
-  fallback: {
-    process: require.resolve("process/browser"),
-    zlib: require.resolve("browserify-zlib"),
-    stream: require.resolve("stream-browserify"),
-    util: require.resolve("util"),
-    buffer: require.resolve("buffer"),
-    asset: require.resolve("assert"),
-  },
-}
-config.additionalConfig.plugins = [
-  new webpack.ProvidePlugin({
-    Buffer: ["buffer", "Buffer"],
-    process: "process/browser",
-  }),
-]
-config.additionalConfig.module= {
-  rules:[
-     {
-       test: /\.(woff|woff2|eot|ttf|otf)$/i,
-       type: 'asset/resource',
-     },
-  ]
-}
-module.exports = config;
-
+module.exports = require("openmrs/default-webpack-config");

package/.babelrc

@@ -1,10 +0,0 @@
-{
-  "presets": [
-    "@babel/preset-env",
-    "@babel/preset-react",
-    "@babel/preset-typescript"
-  ],
-  "plugins": [
-    "@babel/plugin-proposal-class-properties",
-  ],
-}

package/.eslintignore

@@ -1 +0,0 @@
-coverage

package/.eslintrc

@@ -1,5 +0,0 @@
-{
-  "extends": ["ts-react-important-stuff", "prettier"],
-  "parser": "@typescript-eslint/parser",
-  "ignorePatterns": ["*.d.tsx"]
-}

package/.gitattributes

@@ -1 +0,0 @@
-* text=auto

package/.husky/pre-commit

@@ -1,7 +0,0 @@
-#!/bin/sh
-. "$(dirname "$0")/_/husky.sh"
-
-set -e
-
-npx pretty-quick --staged
-npx concurrently 'npm:lint' 'npm:test' 'npm:typescript'

package/.prettierignore

@@ -1,2 +0,0 @@
-/*
-!/src/

package/README.md

@@ -1,4 +0,0 @@
-# pih-esm-pathology-app
-
-Project notes: http://imbcitrus.pih-emr.org:9000/display/HISCol/Oncology+CIRGO+Pathology+EMR+Planing
-