@pieai/pro-gov 0.3.11 → 0.3.12

package/README.md

@@ -45,6 +45,8 @@ pro-gov assets discover --target .
 pro-gov assets recommend --target .
 pro-gov portfolio check --config /path/to/portfolio.json
 pro-gov portfolio plan --config /path/to/portfolio.json --target web-app --json
+pro-gov portfolio assets-check --config /path/to/portfolio.json --json
+pro-gov portfolio doctor --config /path/to/portfolio.json --json
 pro-gov lens inspect --target .
 pro-gov lens report --target . --out .pro-gov/lens-report.md
 pro-gov init --profile engineering-runtime --dry-run
@@ -63,6 +65,8 @@ What these commands do:
 | `assets recommend` | Suggests relevant asset bundles with reasons. | No |
 | `portfolio check` | Validates an external portfolio manifest owned by the user or organization. | No |
 | `portfolio plan` | Builds dry-run asset plans for manifest targets, using packaged public assets unless a full checkout is supplied. | No |
+| `portfolio assets-check` | Checks the integrity of each target's current managed asset lock and symlinks. | No |
+| `portfolio doctor` | Runs the offline fleet gate: package, target CLI, bundle, asset, symlink, Git-state evidence, and optional host-tooling checks. | No |
 | `lens inspect` | Produces ProjectLens-style local evidence. | No |
 | `lens report` | Writes the requested report file. | Only the explicit output |
 | `init --dry-run` | Shows starter/profile files that would be needed. | No |
@@ -98,7 +102,10 @@ User-scoped skills, such as a personal loop library, are not installed into
 project targets; link them once under the user's skill roots instead.
 
 The plan is the safety gate. `apply` may update managed targets described by the
-plan; it must not overwrite an unrelated unmanaged file.
+plan; it must not overwrite an unrelated unmanaged file. When an asset leaves a
+bundle, a plan may remove its old symlink only when the previous lock proves
+ownership and both plan-time and apply-time checks confirm that the path is
+still the same managed symlink.
 
 These checkout-only workflows depend on a maintainer-local `agent-assets/`
 registry when local-only assets are being used. The public repository and npm
@@ -111,7 +118,7 @@ the private-source and public-copy hashes recorded during promotion.
 - `pro-gov` distributes starter, profile, integration, and adoption assets.
 - `pro-gov assets discover|recommend` provides read-only project evidence and
   deterministic recommendations.
-- `pro-gov portfolio check|plan` reads an external portfolio manifest. Real
+- `pro-gov portfolio check|plan|assets-check|doctor` reads an external portfolio manifest. Real
   downstream project lists belong in the user's control repository, not in this
   public package. The manifest does not require a private headquarters repo:
   npm users can omit `controlPlane` and `executionEngine`, and PGS will use the
@@ -127,6 +134,8 @@ the private-source and public-copy hashes recorded during promotion.
   use `--dry-run` and a deliberate migration so local truth is never overwritten.
 - Superpowers, Compound Engineering, and Ponytail are external tools, not
   bundled runtime dependencies.
+- Optional `hostTooling` entries let `portfolio doctor` verify required Codex or
+  Claude Code plugins. PGS does not install or upgrade those plugins.
 
 ## Recommended Companion Tools
 

package/assets/docs/reference/adoption/adoption-playbook.md

@@ -153,6 +153,10 @@ Managed symlinks are relative by default. A target project's normal
 public package to know a maintainer's private registry. Maintainers can add
 `--strict-registry`, or run `pro-gov portfolio assets-check --config
 /path/to/portfolio.json`, when they need central private-registry validation.
+Use `pro-gov portfolio doctor --config /path/to/portfolio.json` as the final
+offline fleet gate when package versions, target-local routers and hooks,
+declared bundles, locks, managed symlinks, and optional host plugins all need to
+be checked together. The command reports dirty Git state but does not edit it.
 
 When a maintainer promotes a private asset into `public-agent-assets/`, the
 public registry must record the private-source hash and the public-copy hash.

package/assets/docs/reference/adoption/recommended-agent-tooling.md

@@ -125,4 +125,7 @@ install PGS packages
 
 PGS does not automatically install, enable, update, or remove these external
 plugins in another person's AI host. It documents the recommended boundary and
-lets each project or user adopt tools deliberately.
+lets each project or user adopt tools deliberately. A user-owned portfolio may
+declare required Codex or Claude Code plugin ids in `hostTooling`; `portfolio
+doctor` then verifies installed/enabled state and reports observed versions.
+The host's native plugin manager remains the installation and update authority.

package/cli-guide.md

@@ -18,6 +18,8 @@ pro-gov assets discover --target .
 pro-gov assets recommend --target .
 pro-gov portfolio check --config /path/to/portfolio.json
 pro-gov portfolio plan --config /path/to/portfolio.json --target web-app --json
+pro-gov portfolio assets-check --config /path/to/portfolio.json --json
+pro-gov portfolio doctor --config /path/to/portfolio.json --json
 pro-gov lens inspect --target .
 pro-gov lens report --target . --out .pro-gov/lens-report.md
 pro-gov lens audit init --target /path/to/project --out audits/project/2026-07-01
@@ -46,6 +48,8 @@ Full upstream-checkout commands:
 pro-gov assets list --json
 pro-gov portfolio check --config /path/to/control-repo/.pro-gov/portfolio.json --json
 pro-gov portfolio plan --config /path/to/control-repo/.pro-gov/portfolio.json --target web-app --json
+pro-gov portfolio assets-check --config /path/to/control-repo/.pro-gov/portfolio.json --json
+pro-gov portfolio doctor --config /path/to/control-repo/.pro-gov/portfolio.json --json
 pro-gov assets plan --bundle base-governance --target . --out .pro-gov/asset-plan.json
 pro-gov assets plan --bundle project-lens --target /path/to/project --host codex --placement manual --out /tmp/project-lens-plan.json
 pro-gov assets apply --plan .pro-gov/asset-plan.json
@@ -72,6 +76,27 @@ public assets packaged with `@pieai/pro-gov`. Add `executionEngine.path` only
 when a full local checkout should provide a private asset registry for strict
 maintainer checks.
 
+`portfolio assets-check` verifies that the currently recorded lock and managed
+links are healthy. `portfolio doctor` additionally compares each target with the
+current portfolio `assetBundles`, registry hashes, package versions, target-local
+router/hook checks, and optional `hostTooling` requirements. The doctor is
+offline and read-only by default. A dirty product worktree is reported as
+evidence but is not itself a governance failure.
+
+Third-party update discovery is deliberately separate and low frequency:
+
+```bash
+pro-gov assets npx update --plan
+codex plugin marketplace upgrade
+codex plugin list --json
+claude plugin update <plugin>
+claude plugin list --json
+```
+
+The native tools own fetching and installation. PGS reviews resulting asset
+changes, regenerates plans, and verifies the fleet; it does not implement a
+second plugin marketplace or silently accept upstream changes.
+
 `lens audit init` creates a raw-first audit package for Project Lens plus
 Ponytail reviews. For a "read-only project audit", the target repository remains
 read-only, but the audit package is still the required output record. `lens

package/dist/cli.js

@@ -79,7 +79,14 @@ function createNpxSkillsMaintenancePlan(options) {
   cpSync(options.npxRoot, tempRoot, { recursive: true, dereference: false });
   const command2 = buildNpxCommand(options);
   const runner = options.runner ?? defaultRunner;
-  const result = runner({ command: command2, cwd: tempRoot });
+  const timeoutMs = options.timeoutMs ?? 3e5;
+  const result = runner({ command: command2, cwd: tempRoot, timeoutMs });
+  if (result.timedOut) {
+    throw new Error(`npx skills ${options.operation} timed out after ${timeoutMs}ms`);
+  }
+  if (result.status === null && result.signal) {
+    throw new Error(`npx skills ${options.operation} terminated by ${result.signal}`);
+  }
   if (result.status !== 0) {
     throw new Error(`npx skills ${options.operation} failed with exit code ${result.status}`);
   }
@@ -128,12 +135,18 @@ function buildNpxCommand(options) {
   if (options.skill) command2.push(options.skill);
   return command2;
 }
-function defaultRunner({ command: command2, cwd }) {
-  const result = spawnSync(command2[0] ?? "npx", command2.slice(1), { cwd, encoding: "utf8" });
+function defaultRunner({ command: command2, cwd, timeoutMs }) {
+  const result = spawnSync(command2[0] ?? "npx", command2.slice(1), {
+    cwd,
+    encoding: "utf8",
+    timeout: timeoutMs
+  });
   return {
     status: result.status,
     stdout: result.stdout,
-    stderr: result.stderr
+    stderr: result.stderr,
+    signal: result.signal,
+    timedOut: result.error?.code === "ETIMEDOUT"
   };
 }
 function snapshotFiles(root) {
@@ -536,8 +549,229 @@ function resolveSafePath(root, sourcePath) {
 }
 
 // src/asset-targets/apply.ts
-import { existsSync as existsSync7, lstatSync as lstatSync2, mkdirSync as mkdirSync2, realpathSync, symlinkSync, unlinkSync, writeFileSync } from "node:fs";
-import { dirname as dirname3, join as join7, relative as relative4, resolve } from "node:path";
+import {
+  existsSync as existsSync8,
+  lstatSync as lstatSync3,
+  mkdirSync as mkdirSync2,
+  readlinkSync as readlinkSync2,
+  realpathSync,
+  symlinkSync,
+  unlinkSync,
+  writeFileSync
+} from "node:fs";
+import { dirname as dirname4, join as join8, relative as relative4, resolve as resolve2 } from "node:path";
+
+// src/asset-targets/install-plan.ts
+import { existsSync as existsSync7, lstatSync as lstatSync2, readFileSync as readFileSync4, readlinkSync } from "node:fs";
+import { basename, dirname as dirname3, join as join7, resolve } from "node:path";
+function createAssetInstallPlan(options) {
+  const placement = options.placement ?? "registry";
+  const assetsById = new Map(options.registry.assets.map((asset) => [asset.id, asset]));
+  const bundlesById = new Map(options.bundles.map((bundle) => [bundle.id, bundle]));
+  const assetIds = resolveBundleAssetIds(options.bundleIds, bundlesById);
+  const assets = assetIds.map((assetId) => {
+    const asset = assetsById.get(assetId);
+    if (!asset) throw new Error(`Unknown asset id in bundle: ${assetId}`);
+    if (asset.kind === "skill" && !asset.hosts.includes(options.host)) {
+      throw new Error(`Asset ${assetId} does not support host ${options.host}`);
+    }
+    return asset;
+  });
+  const lockEntries = createAgentAssetLockEntries(options.registry, options.agentAssetsDir, assetIds);
+  const managedEntries = readManagedEntries(options.targetDir);
+  const managedTargets = new Set(managedEntries.map((entry) => entry.targetPath));
+  const assetActions = assets.map(
+    (asset) => createAssetAction(asset, options.agentAssetsDir, options.targetDir, options.host, placement, managedTargets)
+  );
+  const manifest = {
+    schemaVersion: 1,
+    host: options.host,
+    placement,
+    bundleIds: [...options.bundleIds],
+    assetIds
+  };
+  const lockfile = {
+    schemaVersion: 1,
+    host: options.host,
+    placement,
+    bundleIds: [...options.bundleIds],
+    assets: lockEntries.map((entry) => {
+      const action = assetActions.find((candidate) => "assetId" in candidate && candidate.assetId === entry.id);
+      return {
+        ...entry,
+        targetPath: action && "targetPath" in action ? action.targetPath : ""
+      };
+    })
+  };
+  const writeActions = [
+    {
+      type: "write-file",
+      targetPath: ".pro-gov/assets.json",
+      content: `${JSON.stringify(manifest, null, 2)}
+`
+    },
+    {
+      type: "write-file",
+      targetPath: ".pro-gov/assets.lock.json",
+      content: `${JSON.stringify(lockfile, null, 2)}
+`
+    }
+  ];
+  const expectedTargetPaths = new Set(
+    assetActions.filter((action) => "assetId" in action).map((action) => action.targetPath)
+  );
+  const removalActions = createRemovalActions(
+    options.targetDir,
+    options.agentAssetsDir,
+    managedEntries,
+    expectedTargetPaths
+  );
+  return {
+    schemaVersion: 1,
+    dryRun: true,
+    targetDir: options.targetDir,
+    host: options.host,
+    placement,
+    bundleIds: [...options.bundleIds],
+    assetIds,
+    actions: [
+      ...createDirectoryActions([...assetActions, ...writeActions]),
+      ...removalActions,
+      ...assetActions,
+      ...writeActions
+    ]
+  };
+}
+function resolveBundleAssetIds(bundleIds, bundlesById) {
+  const ids = /* @__PURE__ */ new Set();
+  for (const bundleId of bundleIds) {
+    const bundle = bundlesById.get(bundleId);
+    if (!bundle) throw new Error(`Unknown bundle id: ${bundleId}`);
+    for (const assetId of bundle.assets) {
+      ids.add(assetId);
+    }
+  }
+  return [...ids].sort();
+}
+function createAssetAction(asset, agentAssetsDir, targetDir, host, placement, managedTargets) {
+  if (asset.kind === "skill" && asset.defaultScope === "user") {
+    throw new Error(
+      `User-scoped asset ${asset.id} must be linked at the user level, not installed into a project target.`
+    );
+  }
+  const sourcePath = join7(agentAssetsDir, asset.sourcePath);
+  const targetPath = resolveHostTargetPath(asset, host, placement);
+  const targetAbsolutePath = join7(targetDir, targetPath);
+  const targetExists = pathExistsEvenIfDanglingSymlink2(targetAbsolutePath);
+  if (targetExists) {
+    const stats = lstatSync2(targetAbsolutePath);
+    if (stats.isSymbolicLink() && managedTargets.has(targetPath)) {
+      return {
+        type: "update-symlink",
+        assetId: asset.id,
+        sourcePath,
+        targetPath
+      };
+    }
+    throw new Error(`Refusing to overwrite unmanaged target: ${targetPath}`);
+  }
+  return {
+    type: "symlink",
+    assetId: asset.id,
+    sourcePath,
+    targetPath
+  };
+}
+function resolveHostTargetPath(asset, host, placement) {
+  if (asset.kind === "skill") {
+    const effectivePlacement = resolveSkillPlacement(asset, placement);
+    if (host === "claude-code") {
+      if (placement === "manual") {
+        throw new Error("Manual skill placement is only supported for .agents hosts");
+      }
+      return `.claude/skills/${basename(asset.sourcePath)}`;
+    }
+    if (effectivePlacement === "manual") {
+      return `.agents/manual-skills/${basename(asset.sourcePath)}`;
+    }
+    return `.agents/skills/${basename(asset.sourcePath)}`;
+  }
+  if (asset.kind === "rule") {
+    return `.pro-gov/agent-assets/rules/${basename(asset.sourcePath)}`;
+  }
+  return `.pro-gov/agent-assets/commands/${basename(asset.sourcePath)}`;
+}
+function resolveSkillPlacement(asset, placement) {
+  if (placement !== "registry") return placement;
+  return asset.defaultPlacement ?? "auto";
+}
+function createDirectoryActions(actions) {
+  const directories = /* @__PURE__ */ new Set();
+  for (const action of actions) {
+    if (action.type === "create-dir") continue;
+    const directory = dirname3(action.targetPath);
+    if (directory !== ".") directories.add(directory);
+  }
+  return [...directories].sort().map((targetPath) => ({ type: "create-dir", targetPath }));
+}
+function readManagedEntries(targetDir) {
+  const lockfilePath = join7(targetDir, ".pro-gov/assets.lock.json");
+  if (!existsSync7(lockfilePath)) return [];
+  try {
+    const lockfile = JSON.parse(readFileSync4(lockfilePath, "utf8"));
+    return (lockfile.assets ?? []).filter(
+      (entry) => typeof entry.id === "string" && typeof entry.sourcePath === "string" && typeof entry.targetPath === "string"
+    );
+  } catch {
+    return [];
+  }
+}
+function createRemovalActions(targetDir, agentAssetsDir, managedEntries, expectedTargetPaths) {
+  const actions = [];
+  for (const entry of managedEntries) {
+    if (expectedTargetPaths.has(entry.targetPath)) continue;
+    if (!isManagedAssetTargetPath(entry.targetPath)) {
+      throw new Error(`Refusing to remove managed asset outside supported roots: ${entry.targetPath}`);
+    }
+    const targetAbsolutePath = join7(targetDir, entry.targetPath);
+    if (!pathExistsEvenIfDanglingSymlink2(targetAbsolutePath)) continue;
+    const stats = lstatSync2(targetAbsolutePath);
+    if (!stats.isSymbolicLink()) {
+      throw new Error(`Refusing to remove path that is no longer a managed symlink: ${entry.targetPath}`);
+    }
+    const expectedSourcePath = join7(agentAssetsDir, entry.sourcePath);
+    const actualSourcePath = resolve(dirname3(targetAbsolutePath), readlinkSync(targetAbsolutePath));
+    if (actualSourcePath !== resolve(expectedSourcePath)) {
+      throw new Error(`Refusing to remove managed symlink with changed target: ${entry.targetPath}`);
+    }
+    actions.push({
+      type: "remove-symlink",
+      assetId: entry.id,
+      expectedSourcePath,
+      targetPath: entry.targetPath
+    });
+  }
+  return actions.sort((a, b) => a.targetPath.localeCompare(b.targetPath));
+}
+function isManagedAssetTargetPath(path) {
+  return [
+    ".agents/skills/",
+    ".agents/manual-skills/",
+    ".claude/skills/",
+    ".pro-gov/agent-assets/rules/",
+    ".pro-gov/agent-assets/commands/"
+  ].some((prefix) => path.startsWith(prefix));
+}
+function pathExistsEvenIfDanglingSymlink2(path) {
+  try {
+    lstatSync2(path);
+    return true;
+  } catch {
+    return false;
+  }
+}
+
+// src/asset-targets/apply.ts
 function applyAssetInstallPlan(plan) {
   const appliedActions = [];
   for (const action of plan.actions) {
@@ -547,52 +781,71 @@ function applyAssetInstallPlan(plan) {
   return { appliedActions };
 }
 function applyAction(targetDir, action) {
-  const targetAbsolutePath = join7(targetDir, action.targetPath);
+  const targetAbsolutePath = join8(targetDir, action.targetPath);
+  if (action.type === "remove-symlink") {
+    removeManagedSymlink(targetAbsolutePath, action);
+    return;
+  }
   if (action.type === "create-dir") {
     mkdirSync2(targetAbsolutePath, { recursive: true });
     return;
   }
   if (action.type === "write-file") {
-    mkdirSync2(dirname3(targetAbsolutePath), { recursive: true });
+    mkdirSync2(dirname4(targetAbsolutePath), { recursive: true });
     writeFileSync(targetAbsolutePath, action.content);
     return;
   }
-  mkdirSync2(dirname3(targetAbsolutePath), { recursive: true });
-  const sourceAbsolutePath = resolve(action.sourcePath);
-  const symlinkTarget = relative4(realpathSync(dirname3(targetAbsolutePath)), realpathSync(sourceAbsolutePath)) || ".";
+  mkdirSync2(dirname4(targetAbsolutePath), { recursive: true });
+  const sourceAbsolutePath = resolve2(action.sourcePath);
+  const symlinkTarget = relative4(realpathSync(dirname4(targetAbsolutePath)), realpathSync(sourceAbsolutePath)) || ".";
   if (action.type === "symlink") {
-    if (pathExistsEvenIfDanglingSymlink2(targetAbsolutePath)) {
+    if (pathExistsEvenIfDanglingSymlink3(targetAbsolutePath)) {
       throw new Error(`Refusing to overwrite unmanaged target: ${action.targetPath}`);
     }
     symlinkSync(symlinkTarget, targetAbsolutePath);
     return;
   }
-  if (!pathExistsEvenIfDanglingSymlink2(targetAbsolutePath)) {
+  if (!pathExistsEvenIfDanglingSymlink3(targetAbsolutePath)) {
     symlinkSync(symlinkTarget, targetAbsolutePath);
     return;
   }
-  const stats = lstatSync2(targetAbsolutePath);
+  const stats = lstatSync3(targetAbsolutePath);
   if (!stats.isSymbolicLink()) {
     throw new Error(`Refusing to overwrite unmanaged target: ${action.targetPath}`);
   }
   unlinkSync(targetAbsolutePath);
   symlinkSync(symlinkTarget, targetAbsolutePath);
 }
-function pathExistsEvenIfDanglingSymlink2(path) {
+function removeManagedSymlink(targetAbsolutePath, action) {
+  if (!isManagedAssetTargetPath(action.targetPath)) {
+    throw new Error(`Refusing to remove managed asset outside supported roots: ${action.targetPath}`);
+  }
+  if (!pathExistsEvenIfDanglingSymlink3(targetAbsolutePath)) return;
+  const stats = lstatSync3(targetAbsolutePath);
+  if (!stats.isSymbolicLink()) {
+    throw new Error(`Refusing to remove path that is no longer a managed symlink: ${action.targetPath}`);
+  }
+  const actualSourcePath = resolve2(dirname4(targetAbsolutePath), readlinkSync2(targetAbsolutePath));
+  if (actualSourcePath !== resolve2(action.expectedSourcePath)) {
+    throw new Error(`Refusing to remove managed symlink with changed target: ${action.targetPath}`);
+  }
+  unlinkSync(targetAbsolutePath);
+}
+function pathExistsEvenIfDanglingSymlink3(path) {
   try {
-    lstatSync2(path);
+    lstatSync3(path);
     return true;
   } catch {
-    return existsSync7(path);
+    return existsSync8(path);
   }
 }
 
 // src/asset-targets/check.ts
-import { existsSync as existsSync8, lstatSync as lstatSync3, readFileSync as readFileSync4 } from "node:fs";
-import { basename, join as join8 } from "node:path";
+import { existsSync as existsSync9, lstatSync as lstatSync4, readFileSync as readFileSync5 } from "node:fs";
+import { basename as basename2, join as join9 } from "node:path";
 function checkInstalledAssets(options) {
-  const lockfilePath = join8(options.targetDir, ".pro-gov/assets.lock.json");
-  if (!existsSync8(lockfilePath)) {
+  const lockfilePath = join9(options.targetDir, ".pro-gov/assets.lock.json");
+  if (!existsSync9(lockfilePath)) {
     return {
       targetDir: options.targetDir,
       issues: [
@@ -604,12 +857,12 @@ function checkInstalledAssets(options) {
     };
   }
   const registryById = new Map(options.registry.assets.map((asset) => [asset.id, asset]));
-  const lockfile = JSON.parse(readFileSync4(lockfilePath, "utf8"));
+  const lockfile = JSON.parse(readFileSync5(lockfilePath, "utf8"));
   const issues = [];
   const strictRegistry = options.strictRegistry ?? false;
   for (const entry of lockfile.assets ?? []) {
     const asset = registryById.get(entry.id);
-    const targetAbsolutePath = join8(options.targetDir, entry.targetPath);
+    const targetAbsolutePath = join9(options.targetDir, entry.targetPath);
     if (!asset && strictRegistry) {
       issues.push({
         type: "unknown-asset",
@@ -636,7 +889,7 @@ function checkInstalledAssets(options) {
         issues.push(placementDriftIssue);
       }
     }
-    if (!pathExistsEvenIfDanglingSymlink3(targetAbsolutePath)) {
+    if (!pathExistsEvenIfDanglingSymlink4(targetAbsolutePath)) {
       issues.push({
         type: "missing-target",
         id: entry.id,
@@ -645,7 +898,7 @@ function checkInstalledAssets(options) {
       });
       continue;
     }
-    const targetStats = lstatSync3(targetAbsolutePath);
+    const targetStats = lstatSync4(targetAbsolutePath);
     if (!targetStats.isSymbolicLink()) {
       issues.push({
         type: "unmanaged-conflict",
@@ -655,7 +908,7 @@ function checkInstalledAssets(options) {
       });
       continue;
     }
-    if (!existsSync8(targetAbsolutePath)) {
+    if (!existsSync9(targetAbsolutePath)) {
       issues.push({
         type: "dangling-symlink",
         id: entry.id,
@@ -675,8 +928,8 @@ function checkInstalledAssets(options) {
       });
     }
     if (!asset || !strictRegistry) continue;
-    const sourceAbsolutePath = join8(options.agentAssetsDir, asset.sourcePath);
-    if (!existsSync8(sourceAbsolutePath)) {
+    const sourceAbsolutePath = join9(options.agentAssetsDir, asset.sourcePath);
+    if (!existsSync9(sourceAbsolutePath)) {
       issues.push({
         type: "missing-source",
         id: entry.id,
@@ -714,10 +967,10 @@ function checkDuplicateSkillPlacements(targetDir, registry) {
   const issues = [];
   for (const asset of registry.assets) {
     if (asset.kind !== "skill") continue;
-    const skillName = basename(asset.sourcePath);
+    const skillName = basename2(asset.sourcePath);
     const autoPath = `.agents/skills/${skillName}`;
     const manualPath = `.agents/manual-skills/${skillName}`;
-    if (pathExistsEvenIfDanglingSymlink3(join8(targetDir, autoPath)) && pathExistsEvenIfDanglingSymlink3(join8(targetDir, manualPath))) {
+    if (pathExistsEvenIfDanglingSymlink4(join9(targetDir, autoPath)) && pathExistsEvenIfDanglingSymlink4(join9(targetDir, manualPath))) {
       issues.push({
         type: "duplicate-skill-placement",
         id: asset.id,
@@ -757,7 +1010,7 @@ function expectedSkillTargetPrefixes(host) {
   return void 0;
 }
 function expectedRegistrySkillTargetPath(host, sourcePath, placement) {
-  const skillName = basename(sourcePath);
+  const skillName = basename2(sourcePath);
   if (host === "claude-code") {
     return placement === "manual" ? void 0 : `.claude/skills/${skillName}`;
   }
@@ -766,163 +1019,6 @@ function expectedRegistrySkillTargetPath(host, sourcePath, placement) {
   }
   return void 0;
 }
-function pathExistsEvenIfDanglingSymlink3(path) {
-  try {
-    lstatSync3(path);
-    return true;
-  } catch {
-    return false;
-  }
-}
-
-// src/asset-targets/install-plan.ts
-import { existsSync as existsSync9, lstatSync as lstatSync4, readFileSync as readFileSync5 } from "node:fs";
-import { basename as basename2, dirname as dirname4, join as join9 } from "node:path";
-function createAssetInstallPlan(options) {
-  const placement = options.placement ?? "registry";
-  const assetsById = new Map(options.registry.assets.map((asset) => [asset.id, asset]));
-  const bundlesById = new Map(options.bundles.map((bundle) => [bundle.id, bundle]));
-  const assetIds = resolveBundleAssetIds(options.bundleIds, bundlesById);
-  const assets = assetIds.map((assetId) => {
-    const asset = assetsById.get(assetId);
-    if (!asset) throw new Error(`Unknown asset id in bundle: ${assetId}`);
-    if (asset.kind === "skill" && !asset.hosts.includes(options.host)) {
-      throw new Error(`Asset ${assetId} does not support host ${options.host}`);
-    }
-    return asset;
-  });
-  const lockEntries = createAgentAssetLockEntries(options.registry, options.agentAssetsDir, assetIds);
-  const managedTargets = readManagedTargets(options.targetDir);
-  const assetActions = assets.map(
-    (asset) => createAssetAction(asset, options.agentAssetsDir, options.targetDir, options.host, placement, managedTargets)
-  );
-  const manifest = {
-    schemaVersion: 1,
-    host: options.host,
-    placement,
-    bundleIds: [...options.bundleIds],
-    assetIds
-  };
-  const lockfile = {
-    schemaVersion: 1,
-    host: options.host,
-    placement,
-    bundleIds: [...options.bundleIds],
-    assets: lockEntries.map((entry) => {
-      const action = assetActions.find((candidate) => "assetId" in candidate && candidate.assetId === entry.id);
-      return {
-        ...entry,
-        targetPath: action && "targetPath" in action ? action.targetPath : ""
-      };
-    })
-  };
-  const writeActions = [
-    {
-      type: "write-file",
-      targetPath: ".pro-gov/assets.json",
-      content: `${JSON.stringify(manifest, null, 2)}
-`
-    },
-    {
-      type: "write-file",
-      targetPath: ".pro-gov/assets.lock.json",
-      content: `${JSON.stringify(lockfile, null, 2)}
-`
-    }
-  ];
-  return {
-    schemaVersion: 1,
-    dryRun: true,
-    targetDir: options.targetDir,
-    host: options.host,
-    placement,
-    bundleIds: [...options.bundleIds],
-    assetIds,
-    actions: [...createDirectoryActions([...assetActions, ...writeActions]), ...assetActions, ...writeActions]
-  };
-}
-function resolveBundleAssetIds(bundleIds, bundlesById) {
-  const ids = /* @__PURE__ */ new Set();
-  for (const bundleId of bundleIds) {
-    const bundle = bundlesById.get(bundleId);
-    if (!bundle) throw new Error(`Unknown bundle id: ${bundleId}`);
-    for (const assetId of bundle.assets) {
-      ids.add(assetId);
-    }
-  }
-  return [...ids].sort();
-}
-function createAssetAction(asset, agentAssetsDir, targetDir, host, placement, managedTargets) {
-  if (asset.kind === "skill" && asset.defaultScope === "user") {
-    throw new Error(
-      `User-scoped asset ${asset.id} must be linked at the user level, not installed into a project target.`
-    );
-  }
-  const sourcePath = join9(agentAssetsDir, asset.sourcePath);
-  const targetPath = resolveHostTargetPath(asset, host, placement);
-  const targetAbsolutePath = join9(targetDir, targetPath);
-  const targetExists = pathExistsEvenIfDanglingSymlink4(targetAbsolutePath);
-  if (targetExists) {
-    const stats = lstatSync4(targetAbsolutePath);
-    if (stats.isSymbolicLink() && managedTargets.has(targetPath)) {
-      return {
-        type: "update-symlink",
-        assetId: asset.id,
-        sourcePath,
-        targetPath
-      };
-    }
-    throw new Error(`Refusing to overwrite unmanaged target: ${targetPath}`);
-  }
-  return {
-    type: "symlink",
-    assetId: asset.id,
-    sourcePath,
-    targetPath
-  };
-}
-function resolveHostTargetPath(asset, host, placement) {
-  if (asset.kind === "skill") {
-    const effectivePlacement = resolveSkillPlacement(asset, placement);
-    if (host === "claude-code") {
-      if (placement === "manual") {
-        throw new Error("Manual skill placement is only supported for .agents hosts");
-      }
-      return `.claude/skills/${basename2(asset.sourcePath)}`;
-    }
-    if (effectivePlacement === "manual") {
-      return `.agents/manual-skills/${basename2(asset.sourcePath)}`;
-    }
-    return `.agents/skills/${basename2(asset.sourcePath)}`;
-  }
-  if (asset.kind === "rule") {
-    return `.pro-gov/agent-assets/rules/${basename2(asset.sourcePath)}`;
-  }
-  return `.pro-gov/agent-assets/commands/${basename2(asset.sourcePath)}`;
-}
-function resolveSkillPlacement(asset, placement) {
-  if (placement !== "registry") return placement;
-  return asset.defaultPlacement ?? "auto";
-}
-function createDirectoryActions(actions) {
-  const directories = /* @__PURE__ */ new Set();
-  for (const action of actions) {
-    if (action.type === "create-dir") continue;
-    const directory = dirname4(action.targetPath);
-    if (directory !== ".") directories.add(directory);
-  }
-  return [...directories].sort().map((targetPath) => ({ type: "create-dir", targetPath }));
-}
-function readManagedTargets(targetDir) {
-  const lockfilePath = join9(targetDir, ".pro-gov/assets.lock.json");
-  if (!existsSync9(lockfilePath)) return /* @__PURE__ */ new Set();
-  try {
-    const lockfile = JSON.parse(readFileSync5(lockfilePath, "utf8"));
-    return new Set((lockfile.assets ?? []).map((asset) => asset.targetPath).filter(Boolean));
-  } catch {
-    return /* @__PURE__ */ new Set();
-  }
-}
 function pathExistsEvenIfDanglingSymlink4(path) {
   try {
     lstatSync4(path);
@@ -1642,7 +1738,7 @@ function isEngineeringRuntimeProject(root) {
 import { spawnSync as spawnSync3 } from "node:child_process";
 import { existsSync as existsSync13, mkdirSync as mkdirSync4, readFileSync as readFileSync10, writeFileSync as writeFileSync3 } from "node:fs";
 import { tmpdir as tmpdir2 } from "node:os";
-import { basename as basename3, join as join13, resolve as resolve2 } from "node:path";
+import { basename as basename3, join as join13, resolve as resolve3 } from "node:path";
 
 // src/host-hooks/host-hook-runner.ts
 import { closeSync, openSync, readFileSync as readFileSync9, readSync, statSync as statSync3 } from "node:fs";
@@ -1967,7 +2063,7 @@ function defaultDebugDir() {
   });
   const value = gitPath.status === 0 ? gitPath.stdout.trim() : "";
   if (value) {
-    return resolve2(process.cwd(), value);
+    return resolve3(process.cwd(), value);
   }
   return join13(tmpdir2(), "pro-gov-hook-debug", basename3(process.cwd()));
 }
@@ -1983,8 +2079,8 @@ function readPackageVersion() {
 }
 function resolvePackageJsonPath() {
   const candidates = [
-    resolve2(process.cwd(), "packages/pro-gov/package.json"),
-    resolve2(process.cwd(), "node_modules/@pieai/pro-gov/package.json")
+    resolve3(process.cwd(), "packages/pro-gov/package.json"),
+    resolve3(process.cwd(), "node_modules/@pieai/pro-gov/package.json")
   ];
   return candidates.find((candidate) => existsSync13(candidate));
 }
@@ -2691,12 +2787,12 @@ function printUsage2() {
 }
 
 // src/commands/portfolio.ts
-import { existsSync as existsSync18 } from "node:fs";
-import { join as join17 } from "node:path";
+import { existsSync as existsSync20 } from "node:fs";
+import { join as join19 } from "node:path";
 
 // src/portfolio/manifest.ts
 import { existsSync as existsSync17, readFileSync as readFileSync14 } from "node:fs";
-import { dirname as dirname10, isAbsolute as isAbsolute3, resolve as resolve3 } from "node:path";
+import { dirname as dirname10, isAbsolute as isAbsolute3, resolve as resolve4 } from "node:path";
 function loadPortfolioManifest(configPath) {
   let parsed;
   try {
@@ -2712,7 +2808,7 @@ function loadPortfolioManifest(configPath) {
       ]
     };
   }
-  const normalized = resolveManifestPaths(parsed, dirname10(resolve3(configPath)));
+  const normalized = resolveManifestPaths(parsed, dirname10(resolve4(configPath)));
   const issues = validatePortfolioManifest(normalized);
   return {
     configPath,
@@ -2726,7 +2822,7 @@ function resolveManifestPaths(value, configDir) {
     if (!isRecord2(endpoint) || typeof endpoint.path !== "string" || isAbsolute3(endpoint.path)) {
       return endpoint;
     }
-    return { ...endpoint, path: resolve3(configDir, endpoint.path) };
+    return { ...endpoint, path: resolve4(configDir, endpoint.path) };
   };
   return {
     ...value,
@@ -2760,9 +2856,15 @@ function validatePortfolioManifest(value) {
       message: "Portfolio manifest portfolioId must be a non-empty string."
     });
   }
-  validateAllowedFields(value, "root", ["schemaVersion", "portfolioId", "controlPlane", "executionEngine", "targets"], issues);
+  validateAllowedFields(
+    value,
+    "root",
+    ["schemaVersion", "portfolioId", "controlPlane", "executionEngine", "hostTooling", "targets"],
+    issues
+  );
   validateEndpoint(value.controlPlane, "controlPlane", issues);
   validateEndpoint(value.executionEngine, "executionEngine", issues);
+  validateHostTooling(value.hostTooling, issues);
   if (!Array.isArray(value.targets)) {
     issues.push({
       type: "invalid-field",
@@ -2874,19 +2976,462 @@ function validateOptionalStringArray(value, id, field, issues) {
     });
   }
 }
+function validateHostTooling(value, issues) {
+  if (value === void 0) return;
+  if (!Array.isArray(value)) {
+    issues.push({
+      type: "invalid-field",
+      field: "hostTooling",
+      message: "Portfolio hostTooling must be an array."
+    });
+    return;
+  }
+  const seenHosts = /* @__PURE__ */ new Set();
+  for (const entry of value) {
+    if (!isRecord2(entry)) {
+      issues.push({
+        type: "invalid-field",
+        field: "hostTooling",
+        message: "Portfolio hostTooling entry must be an object."
+      });
+      continue;
+    }
+    validateAllowedFields(entry, "hostTooling", ["host", "plugins"], issues);
+    if (entry.host !== "codex" && entry.host !== "claude-code") {
+      issues.push({
+        type: "invalid-field",
+        field: "hostTooling.host",
+        message: "Portfolio hostTooling host must be codex or claude-code."
+      });
+    } else if (seenHosts.has(entry.host)) {
+      issues.push({
+        type: "invalid-field",
+        field: "hostTooling",
+        message: `Duplicate portfolio hostTooling entry: ${entry.host}`
+      });
+    } else {
+      seenHosts.add(entry.host);
+    }
+    if (!Array.isArray(entry.plugins) || !entry.plugins.every((plugin) => typeof plugin === "string" && plugin.length > 0)) {
+      issues.push({
+        type: "invalid-field",
+        field: "hostTooling.plugins",
+        message: "Portfolio hostTooling plugins must be an array of non-empty strings."
+      });
+    }
+  }
+}
 function isRecord2(value) {
   return typeof value === "object" && value !== null && !Array.isArray(value);
 }
 
+// src/portfolio/doctor.ts
+import { spawnSync as spawnSync6 } from "node:child_process";
+import { existsSync as existsSync19, readFileSync as readFileSync16 } from "node:fs";
+import { createRequire as createRequire2 } from "node:module";
+import { dirname as dirname11, join as join18 } from "node:path";
+import { fileURLToPath as fileURLToPath3 } from "node:url";
+
+// src/host-tooling/inventory.ts
+import { spawnSync as spawnSync5 } from "node:child_process";
+function inspectHostTooling(requirements, runner = defaultRunner2) {
+  const hosts = [];
+  const issues = [];
+  for (const requirement of requirements) {
+    const command2 = requirement.host === "codex" ? ["codex", "plugin", "list", "--json"] : ["claude", "plugin", "list", "--json"];
+    const result = runner({ host: requirement.host, command: command2 });
+    if (result.status !== 0) {
+      issues.push({
+        type: "host-tooling-command-failed",
+        host: requirement.host,
+        message: `Unable to inspect ${requirement.host} plugins: ${result.stderr || `exit ${result.status}`}`
+      });
+      hosts.push({ host: requirement.host, plugins: [] });
+      continue;
+    }
+    let plugins;
+    try {
+      plugins = parseHostPlugins(requirement.host, JSON.parse(result.stdout));
+    } catch (error) {
+      issues.push({
+        type: "host-tooling-command-failed",
+        host: requirement.host,
+        message: `Unable to parse ${requirement.host} plugin inventory: ${error instanceof Error ? error.message : String(error)}`
+      });
+      hosts.push({ host: requirement.host, plugins: [] });
+      continue;
+    }
+    const byId = new Map(plugins.map((plugin) => [plugin.id, plugin]));
+    hosts.push({
+      host: requirement.host,
+      plugins: requirement.plugins.flatMap((pluginId) => {
+        const plugin = byId.get(pluginId);
+        return plugin ? [plugin] : [];
+      })
+    });
+    for (const pluginId of requirement.plugins) {
+      const plugin = byId.get(pluginId);
+      if (!plugin) {
+        issues.push({
+          type: "host-tooling-missing",
+          host: requirement.host,
+          pluginId,
+          message: `Required ${requirement.host} plugin is missing: ${pluginId}`
+        });
+      } else if (!plugin.enabled) {
+        issues.push({
+          type: "host-tooling-disabled",
+          host: requirement.host,
+          pluginId,
+          message: `Required ${requirement.host} plugin is disabled: ${pluginId}`
+        });
+      }
+    }
+  }
+  return { hosts, issues };
+}
+function parseHostPlugins(host, value) {
+  const entries = host === "codex" ? isRecord3(value) && Array.isArray(value.installed) ? value.installed : void 0 : Array.isArray(value) ? value : void 0;
+  if (!entries) throw new Error("expected a plugin array");
+  return entries.flatMap((entry) => {
+    if (!isRecord3(entry)) return [];
+    const id = host === "codex" ? entry.pluginId : entry.id;
+    if (typeof id !== "string") return [];
+    return [{
+      id,
+      version: typeof entry.version === "string" ? entry.version : void 0,
+      enabled: entry.enabled === true
+    }];
+  });
+}
+function defaultRunner2({ command: command2 }) {
+  const result = spawnSync5(command2[0] ?? "", command2.slice(1), {
+    encoding: "utf8",
+    timeout: 1e4
+  });
+  return {
+    status: result.status,
+    stdout: result.stdout,
+    stderr: result.stderr || result.error?.message || ""
+  };
+}
+function isRecord3(value) {
+  return typeof value === "object" && value !== null && !Array.isArray(value);
+}
+
+// src/portfolio/asset-state.ts
+import { existsSync as existsSync18, lstatSync as lstatSync5, readFileSync as readFileSync15 } from "node:fs";
+import { join as join17 } from "node:path";
+function comparePortfolioAssetState(options) {
+  const expectedManifest = readPlanDocument(options.expectedPlan, ".pro-gov/assets.json");
+  const expectedLock = readPlanDocument(options.expectedPlan, ".pro-gov/assets.lock.json");
+  const currentManifest = readJsonFile(join17(options.targetDir, ".pro-gov/assets.json"));
+  const currentLock = readJsonFile(join17(options.targetDir, ".pro-gov/assets.lock.json"));
+  const issues = [];
+  if (!sameStrings(currentManifest?.bundleIds, expectedManifest?.bundleIds)) {
+    issues.push({
+      type: "bundle-drift",
+      message: "Target asset bundles do not match the portfolio manifest."
+    });
+  }
+  if (!sameStrings(currentManifest?.assetIds, expectedManifest?.assetIds)) {
+    issues.push({
+      type: "asset-set-drift",
+      message: "Target asset ids do not match the current bundle definitions."
+    });
+  }
+  if (!sameLock(currentLock, expectedLock)) {
+    issues.push({
+      type: "asset-lock-drift",
+      message: "Target asset lock does not match the current registry, placement, and content hashes."
+    });
+  }
+  const expectedTargets = new Set((expectedLock?.assets ?? []).map((entry) => entry.targetPath));
+  for (const entry of currentLock?.assets ?? []) {
+    if (expectedTargets.has(entry.targetPath)) continue;
+    const targetAbsolutePath = join17(options.targetDir, entry.targetPath);
+    if (!pathIsSymlink(targetAbsolutePath)) continue;
+    issues.push({
+      type: "orphaned-managed-symlink",
+      targetPath: entry.targetPath,
+      message: `Previously managed symlink is absent from the expected bundle state: ${entry.targetPath}`
+    });
+  }
+  return { issues };
+}
+function readPlanDocument(plan, targetPath) {
+  const action = plan.actions.find(
+    (candidate) => candidate.type === "write-file" && candidate.targetPath === targetPath
+  );
+  if (!action || action.type !== "write-file") return void 0;
+  try {
+    return JSON.parse(action.content);
+  } catch {
+    return void 0;
+  }
+}
+function readJsonFile(path) {
+  if (!existsSync18(path)) return void 0;
+  try {
+    return JSON.parse(readFileSync15(path, "utf8"));
+  } catch {
+    return void 0;
+  }
+}
+function sameStrings(left, right) {
+  return JSON.stringify([...left ?? []].sort()) === JSON.stringify([...right ?? []].sort());
+}
+function sameLock(left, right) {
+  return JSON.stringify(normalizeLock(left)) === JSON.stringify(normalizeLock(right));
+}
+function normalizeLock(lock) {
+  return {
+    host: lock?.host,
+    placement: lock?.placement,
+    bundleIds: [...lock?.bundleIds ?? []].sort(),
+    assets: [...lock?.assets ?? []].sort((a, b) => a.id.localeCompare(b.id))
+  };
+}
+function pathIsSymlink(path) {
+  try {
+    return lstatSync5(path).isSymbolicLink();
+  } catch {
+    return false;
+  }
+}
+
+// src/portfolio/doctor.ts
+function inspectPortfolio(options) {
+  const expectedPackageVersions = getExpectedPackageVersions();
+  const hostTooling = inspectHostTooling(options.manifest.hostTooling ?? []);
+  const targets = options.targets.map((target) => inspectTarget({
+    target,
+    agentAssetsDir: options.agentAssetsDir,
+    registry: options.registry,
+    bundles: options.bundles,
+    expectedPackageVersions
+  }));
+  return {
+    ok: hostTooling.issues.length === 0 && targets.every((target) => target.issues.length === 0),
+    portfolioId: options.manifest.portfolioId,
+    expectedPackageVersions,
+    hostTooling,
+    targets
+  };
+}
+function inspectTarget(options) {
+  const { target } = options;
+  const issues = [];
+  const packageJson = readJson2(join18(target.path, "package.json"));
+  const packages = {};
+  for (const packageName of ["@pieai/pro-gov", "@pieai/doc-gov"]) {
+    const declared = packageJson?.devDependencies?.[packageName] ?? packageJson?.dependencies?.[packageName];
+    const installedPackage = readJson2(join18(target.path, "node_modules", packageName, "package.json"));
+    const installed = installedPackage?.version;
+    const expected = options.expectedPackageVersions[packageName];
+    packages[packageName] = { declared, installed, expected };
+    if (!declared) {
+      issues.push({
+        type: "package-declaration-missing",
+        packageName,
+        message: `Target does not declare ${packageName}.`
+      });
+    }
+    if (!installed || expected && installed !== expected) {
+      issues.push({
+        type: "package-version-drift",
+        packageName,
+        message: `Target ${packageName} installed version is ${installed ?? "missing"}; expected ${expected ?? "unknown"}.`
+      });
+    }
+  }
+  const checks = runTargetChecks(target);
+  for (const check of checks) {
+    if (check.status === 0) continue;
+    issues.push({
+      type: "target-check-failed",
+      check: check.name,
+      message: `Target check failed: ${check.name} (${check.status ?? "unavailable"}).`
+    });
+  }
+  const assetCheck = checkInstalledAssets({
+    targetDir: target.path,
+    agentAssetsDir: options.agentAssetsDir,
+    registry: options.registry,
+    strictRegistry: true
+  });
+  issues.push(...assetCheck.issues.map((issue) => ({
+    type: issue.type,
+    targetPath: issue.targetPath,
+    message: issue.message
+  })));
+  try {
+    const expectedPlan = createAssetInstallPlan({
+      targetDir: target.path,
+      agentAssetsDir: options.agentAssetsDir,
+      registry: options.registry,
+      bundles: options.bundles,
+      bundleIds: target.assetBundles ?? [],
+      host: "codex"
+    });
+    issues.push(...comparePortfolioAssetState({ targetDir: target.path, expectedPlan }).issues);
+  } catch (error) {
+    issues.push({
+      type: "asset-lock-drift",
+      message: error instanceof Error ? error.message : String(error)
+    });
+    if (!existsSync19(join18(target.path, ".pro-gov/assets.json"))) {
+      issues.push({ type: "bundle-drift", message: "Target asset manifest is missing." });
+    }
+  }
+  return {
+    id: target.id,
+    path: target.path,
+    profile: target.profile,
+    packages,
+    git: inspectGit(target.path),
+    checks,
+    issues: deduplicateIssues(issues)
+  };
+}
+function runTargetChecks(target) {
+  const proGovCli = join18(target.path, "node_modules/@pieai/pro-gov/dist/cli.js");
+  const docGovCli = join18(target.path, "node_modules/@pieai/doc-gov/dist/cli.js");
+  const commands = [
+    {
+      name: "pro-gov doctor",
+      cli: proGovCli,
+      args: target.profile === "engineering-runtime" ? ["doctor", "--strict-hooks"] : ["doctor"]
+    },
+    { name: "doc-gov router-check", cli: docGovCli, args: ["router-check"] },
+    { name: "doc-gov scan --check", cli: docGovCli, args: ["scan", "--check"] }
+  ];
+  return commands.map((command2) => {
+    if (!existsSync19(command2.cli)) return { name: command2.name, status: null };
+    const result = spawnSync6(process.execPath, [command2.cli, ...command2.args], {
+      cwd: target.path,
+      encoding: "utf8",
+      timeout: 3e4
+    });
+    return { name: command2.name, status: result.status };
+  });
+}
+function inspectGit(path) {
+  const inside = spawnSync6("git", ["rev-parse", "--is-inside-work-tree"], {
+    cwd: path,
+    encoding: "utf8"
+  });
+  if (inside.status !== 0) return { isRepository: false, dirty: false };
+  const status = spawnSync6("git", ["status", "--porcelain"], { cwd: path, encoding: "utf8" });
+  const branch = spawnSync6("git", ["branch", "--show-current"], { cwd: path, encoding: "utf8" });
+  return {
+    isRepository: true,
+    dirty: status.stdout.trim().length > 0,
+    branch: branch.stdout.trim() || void 0
+  };
+}
+function getExpectedPackageVersions() {
+  const proGovPackage = readJson2(findOwnPackageJson());
+  let docGovVersion;
+  try {
+    const require2 = createRequire2(import.meta.url);
+    const docGovPackage = readJson2(require2.resolve("@pieai/doc-gov/package.json"));
+    docGovVersion = docGovPackage?.version;
+  } catch {
+    docGovVersion = void 0;
+  }
+  return {
+    "@pieai/pro-gov": proGovPackage?.version,
+    "@pieai/doc-gov": docGovVersion
+  };
+}
+function findOwnPackageJson() {
+  let current = dirname11(fileURLToPath3(import.meta.url));
+  for (let depth = 0; depth < 5; depth += 1) {
+    const candidate = join18(current, "package.json");
+    if (existsSync19(candidate)) return candidate;
+    current = dirname11(current);
+  }
+  return "";
+}
+function readJson2(path) {
+  if (!path || !existsSync19(path)) return void 0;
+  try {
+    return JSON.parse(readFileSync16(path, "utf8"));
+  } catch {
+    return void 0;
+  }
+}
+function deduplicateIssues(issues) {
+  const seen = /* @__PURE__ */ new Set();
+  return issues.filter((issue) => {
+    const key = `${issue.type}\0${issue.packageName ?? ""}\0${issue.targetPath ?? ""}\0${issue.check ?? ""}\0${issue.message}`;
+    if (seen.has(key)) return false;
+    seen.add(key);
+    return true;
+  });
+}
+
 // src/commands/portfolio.ts
 function runPortfolio(args) {
   const [subcommand2, ...rest] = args;
   if (subcommand2 === "check") return runPortfolioCheck(rest);
   if (subcommand2 === "plan") return runPortfolioPlan(rest);
   if (subcommand2 === "assets-check") return runPortfolioAssetsCheck(rest);
+  if (subcommand2 === "doctor") return runPortfolioDoctor(rest);
   printUsage3();
   return 1;
 }
+function runPortfolioDoctor(args) {
+  const options = parsePortfolioOptions(args);
+  if (!options.ok) {
+    console.error(options.error);
+    printUsage3();
+    return 1;
+  }
+  const loaded = loadPortfolioManifest(options.value.configPath);
+  if (loaded.issues.length > 0 || !loaded.manifest) {
+    if (options.value.json) {
+      console.log(JSON.stringify({ ok: false, configPath: loaded.configPath, issues: loaded.issues, targets: [] }, null, 2));
+    } else {
+      for (const issue of loaded.issues) console.error(`${issue.type}: ${issue.message}`);
+    }
+    return 1;
+  }
+  const targets = getDefaultPortfolioTargets(loaded.manifest).filter(
+    (target) => !options.value.targetId || options.value.targetId === "all" || target.id === options.value.targetId
+  );
+  if (targets.length === 0) {
+    console.error(`Unknown portfolio target: ${options.value.targetId}`);
+    return 1;
+  }
+  const loadedAssets = loadAgentAssetRegistry({
+    agentAssetsDir: findPortfolioAgentAssetsDir(loaded.manifest)
+  });
+  if (loadedAssets.issues.length > 0) {
+    for (const issue of loadedAssets.issues) console.error(`${issue.type}: ${issue.message}`);
+    return 1;
+  }
+  const result = inspectPortfolio({
+    manifest: loaded.manifest,
+    targets,
+    agentAssetsDir: loadedAssets.agentAssetsDir,
+    registry: loadedAssets.registry,
+    bundles: loadAgentAssetBundles(loadedAssets.agentAssetsDir)
+  });
+  const output = { configPath: loaded.configPath, ...result };
+  if (options.value.json) {
+    console.log(JSON.stringify(output, null, 2));
+  } else if (result.ok) {
+    console.log(`portfolio doctor passed (${targets.length} targets)`);
+  } else {
+    for (const issue of result.hostTooling.issues) console.log(`${issue.host}	${issue.type}: ${issue.message}`);
+    for (const target of result.targets) {
+      for (const issue of target.issues) console.log(`${target.id}	${issue.type}: ${issue.message}`);
+    }
+  }
+  return result.ok ? 0 : 1;
+}
 function runPortfolioCheck(args) {
   const options = parsePortfolioOptions(args);
   if (!options.ok) {
@@ -3129,19 +3674,20 @@ function isHost2(value) {
   return value === "codex" || value === "claude-code" || value === "gemini-cli" || value === "antigravity";
 }
 function findPortfolioAgentAssetsDir(manifest) {
-  const agentAssetsDir = manifest?.executionEngine?.path ? join17(manifest.executionEngine.path, "agent-assets") : void 0;
-  return agentAssetsDir && existsSync18(join17(agentAssetsDir, "registry.json")) ? agentAssetsDir : void 0;
+  const agentAssetsDir = manifest?.executionEngine?.path ? join19(manifest.executionEngine.path, "agent-assets") : void 0;
+  return agentAssetsDir && existsSync20(join19(agentAssetsDir, "registry.json")) ? agentAssetsDir : void 0;
 }
 function printUsage3() {
   console.error("Usage:");
   console.error("  pro-gov portfolio check --config <path> [--json]");
   console.error("  pro-gov portfolio plan --config <path> [--target <id|all>] [--host codex|claude-code|gemini-cli|antigravity] [--json]");
   console.error("  pro-gov portfolio assets-check --config <path> [--target <id|all>] [--json]");
+  console.error("  pro-gov portfolio doctor --config <path> [--target <id|all>] [--json]");
 }
 
 // src/commands/sync.ts
-import { existsSync as existsSync19, readFileSync as readFileSync15 } from "node:fs";
-import { join as join18 } from "node:path";
+import { existsSync as existsSync21, readFileSync as readFileSync17 } from "node:fs";
+import { join as join20 } from "node:path";
 function runSync(args) {
   if (!args.includes("--check")) {
     console.error("pro-gov sync is read-only and requires --check.");
@@ -3168,16 +3714,16 @@ function runSync(args) {
   console.log("pro-gov sync check");
   console.log(`profile: ${profile}`);
   for (const file of planStarterFiles(profile)) {
-    const targetPath = join18(process.cwd(), file.targetPath);
-    if (!existsSync19(targetPath)) {
+    const targetPath = join20(process.cwd(), file.targetPath);
+    if (!existsSync21(targetPath)) {
       if (file.ownership === "optional-guardrail") continue;
       console.log(`missing: ${file.targetPath}`);
       differences += 1;
       continue;
     }
     if (file.ownership === "project-local-seed") continue;
-    const source = readFileSync15(file.absoluteSourcePath, "utf8");
-    const target = readFileSync15(targetPath, "utf8");
+    const source = readFileSync17(file.absoluteSourcePath, "utf8");
+    const target = readFileSync17(targetPath, "utf8");
     if (source !== target) {
       console.log(`different: ${file.targetPath}`);
       differences += 1;
@@ -3192,7 +3738,7 @@ function runSync(args) {
 }
 function inferInstalledProfile(root) {
   const installed = ["engineering-runtime", "doc-only"].filter(
-    (profile) => existsSync19(join18(root, `docs/governance/agents-routing/${profile}-v0.9.md`))
+    (profile) => existsSync21(join20(root, `docs/governance/agents-routing/${profile}-v0.9.md`))
   );
   return installed.length === 1 ? installed[0] : void 0;
 }
@@ -3215,6 +3761,7 @@ var COMMANDS = [
   "portfolio check --config <path> [--json]",
   "portfolio plan --config <path> [--target <id|all>] [--json]",
   "portfolio assets-check --config <path> [--target <id|all>] [--json]",
+  "portfolio doctor --config <path> [--target <id|all>] [--json]",
   "lens scan [--target <path>] [--json]",
   "lens inspect [--target <path>] [--format text|json]",
   "lens report --target <path> --out <path>",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@pieai/pro-gov",
-  "version": "0.3.11",
+  "version": "0.3.12",
   "description": "Project-level distribution kit for Project Governance System.",
   "keywords": [
     "ai-agents",
@@ -35,7 +35,7 @@
     "access": "public"
   },
   "dependencies": {
-    "@pieai/doc-gov": "^0.3.11"
+    "@pieai/doc-gov": "^0.3.12"
   },
   "devDependencies": {
     "@types/node": "24.13.2",