@phren/cli 0.0.53 → 0.0.54

package/mcp/dist/ui/data.js

@@ -443,6 +443,14 @@ export async function buildGraph(phrenPath, profile, focusProject, existingDb) {
                     .map((ref) => ref.scoreKey)
                     .filter((key) => Boolean(key))
                     .sort();
+                // Only include entities that link to at least one visible project
+                const linkedProjects = new Set();
+                for (const ref of refs) {
+                    if (ref.project && projectSet.has(ref.project))
+                        linkedProjects.add(ref.project);
+                }
+                if (linkedProjects.size === 0)
+                    continue; // skip orphan entities from other profiles/stores
                 const nodeId = `entity:${stableId("entity", type, name)}`;
                 nodes.push({
                     id: nodeId,
@@ -457,12 +465,6 @@ export async function buildGraph(phrenPath, profile, focusProject, existingDb) {
                     entityType: type,
                     refDocs: refs,
                 });
-                // Link fragment to each project it appears in
-                const linkedProjects = new Set();
-                for (const ref of refs) {
-                    if (ref.project && projectSet.has(ref.project))
-                        linkedProjects.add(ref.project);
-                }
                 for (const proj of linkedProjects) {
                     links.push({ source: nodeId, target: proj });
                 }

package/mcp/dist/ui/page.js

@@ -203,6 +203,7 @@ ${REVIEW_UI_STYLES}
         <button id="graph-zoom-in" title="Zoom in">+</button>
         <button id="graph-zoom-out" title="Zoom out">-</button>
         <button id="graph-reset" title="Reset view">R</button>
+        <button id="graph-reset-layout" title="Re-run layout">L</button>
       </div>
       <div class="graph-filters">
         <div class="graph-filter" id="graph-filter"></div>

package/mcp/dist/ui/scripts.js

@@ -1466,6 +1466,8 @@ export function renderEventWiringScript() {
   if (graphZoomOut) graphZoomOut.addEventListener('click', function() { graphZoom(0.8); });
   var graphResetBtn = document.getElementById('graph-reset');
   if (graphResetBtn) graphResetBtn.addEventListener('click', function() { graphReset(); });
+  var graphResetLayoutBtn = document.getElementById('graph-reset-layout');
+  if (graphResetLayoutBtn) graphResetLayoutBtn.addEventListener('click', function() { if (typeof graphResetLayout === 'function') graphResetLayout(); });
 
   // --- Tasks filters ---
   var tasksFilterProject = document.getElementById('tasks-filter-project');

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@phren/cli",
-  "version": "0.0.53",
+  "version": "0.0.54",
   "description": "Knowledge layer for AI agents. Phren learns and recalls.",
   "type": "module",
   "bin": {