@phi-code-admin/phi-code 0.95.0 → 0.96.1

package/dist/migrations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../src/migrations.ts"],"names":[],"mappings":"AAAA;;GAEG;AAaH;;;;GAIG;AACH,wBAAgB,qBAAqB,IAAI,MAAM,EAAE,CAoDhD;AAED;;;;;;;;GAQG;AACH,wBAAgB,4BAA4B,IAAI,IAAI,CA+CnD;AA+ID;;GAEG;AACH,wBAAsB,uBAAuB,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CA2C/E;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,GAAG;IAC3C,qBAAqB,EAAE,MAAM,EAAE,CAAC;IAChC,mBAAmB,EAAE,MAAM,EAAE,CAAC;CAC9B,CAOA","sourcesContent":["/**\n * One-time migrations that run on startup.\n */\n\nimport chalk from \"chalk\";\nimport { existsSync, mkdirSync, readdirSync, readFileSync, renameSync, rmSync, writeFileSync } from \"fs\";\nimport { basename, dirname, join } from \"path\";\nimport { CONFIG_DIR_NAME, getAgentDir, getBinDir } from \"./config.js\";\nimport { migrateKeybindingsConfig } from \"./core/keybindings.js\";\n\nconst MIGRATION_GUIDE_URL =\n\t\"https://github.com/earendil-works/pi-mono/blob/main/packages/coding-agent/CHANGELOG.md#extensions-migration\";\nconst EXTENSIONS_DOC_URL =\n\t\"https://github.com/earendil-works/pi-mono/blob/main/packages/coding-agent/docs/extensions.md\";\n\n/**\n * Migrate legacy oauth.json and settings.json apiKeys to auth.json.\n *\n * @returns Array of provider names that were migrated\n */\nexport function migrateAuthToAuthJson(): string[] {\n\tconst agentDir = getAgentDir();\n\tconst authPath = join(agentDir, \"auth.json\");\n\tconst oauthPath = join(agentDir, \"oauth.json\");\n\tconst settingsPath = join(agentDir, \"settings.json\");\n\n\t// Skip if auth.json already exists\n\tif (existsSync(authPath)) return [];\n\n\tconst migrated: Record<string, unknown> = {};\n\tconst providers: string[] = [];\n\n\t// Migrate oauth.json\n\tif (existsSync(oauthPath)) {\n\t\ttry {\n\t\t\tconst oauth = JSON.parse(readFileSync(oauthPath, \"utf-8\"));\n\t\t\tfor (const [provider, cred] of Object.entries(oauth)) {\n\t\t\t\tmigrated[provider] = { type: \"oauth\", ...(cred as object) };\n\t\t\t\tproviders.push(provider);\n\t\t\t}\n\t\t\trenameSync(oauthPath, `${oauthPath}.migrated`);\n\t\t} catch {\n\t\t\t// Skip on error\n\t\t}\n\t}\n\n\t// Migrate settings.json apiKeys\n\tif (existsSync(settingsPath)) {\n\t\ttry {\n\t\t\tconst content = readFileSync(settingsPath, \"utf-8\");\n\t\t\tconst settings = JSON.parse(content);\n\t\t\tif (settings.apiKeys && typeof settings.apiKeys === \"object\") {\n\t\t\t\tfor (const [provider, key] of Object.entries(settings.apiKeys)) {\n\t\t\t\t\tif (!migrated[provider] && typeof key === \"string\") {\n\t\t\t\t\t\tmigrated[provider] = { type: \"api_key\", key };\n\t\t\t\t\t\tproviders.push(provider);\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tdelete settings.apiKeys;\n\t\t\t\twriteFileSync(settingsPath, JSON.stringify(settings, null, 2));\n\t\t\t}\n\t\t} catch {\n\t\t\t// Skip on error\n\t\t}\n\t}\n\n\tif (Object.keys(migrated).length > 0) {\n\t\tmkdirSync(dirname(authPath), { recursive: true });\n\t\twriteFileSync(authPath, JSON.stringify(migrated, null, 2), { mode: 0o600 });\n\t}\n\n\treturn providers;\n}\n\n/**\n * Migrate sessions from ~/.pi/agent/*.jsonl to proper session directories.\n *\n * Bug in v0.30.0: Sessions were saved to ~/.pi/agent/ instead of\n * ~/.pi/agent/sessions/<encoded-cwd>/. This migration moves them\n * to the correct location based on the cwd in their session header.\n *\n * See: https://github.com/earendil-works/pi-mono/issues/320\n */\nexport function migrateSessionsFromAgentRoot(): void {\n\tconst agentDir = getAgentDir();\n\n\t// Find all .jsonl files directly in agentDir (not in subdirectories)\n\tlet files: string[];\n\ttry {\n\t\tfiles = readdirSync(agentDir)\n\t\t\t.filter((f) => f.endsWith(\".jsonl\"))\n\t\t\t.map((f) => join(agentDir, f));\n\t} catch {\n\t\treturn;\n\t}\n\n\tif (files.length === 0) return;\n\n\tfor (const file of files) {\n\t\ttry {\n\t\t\t// Read first line to get session header\n\t\t\tconst content = readFileSync(file, \"utf8\");\n\t\t\tconst firstLine = content.split(\"\\n\")[0];\n\t\t\tif (!firstLine?.trim()) continue;\n\n\t\t\tconst header = JSON.parse(firstLine);\n\t\t\tif (header.type !== \"session\" || !header.cwd) continue;\n\n\t\t\tconst cwd: string = header.cwd;\n\n\t\t\t// Compute the correct session directory (same encoding as session-manager.ts)\n\t\t\tconst safePath = `--${cwd.replace(/^[/\\\\]/, \"\").replace(/[/\\\\:]/g, \"-\")}--`;\n\t\t\tconst correctDir = join(agentDir, \"sessions\", safePath);\n\n\t\t\t// Create directory if needed\n\t\t\tif (!existsSync(correctDir)) {\n\t\t\t\tmkdirSync(correctDir, { recursive: true });\n\t\t\t}\n\n\t\t\t// Move the file (basename handles both separators per platform)\n\t\t\tconst fileName = basename(file);\n\t\t\tconst newPath = join(correctDir, fileName);\n\n\t\t\tif (existsSync(newPath)) continue; // Skip if target exists\n\n\t\t\trenameSync(file, newPath);\n\t\t} catch {\n\t\t\t// Skip files that can't be migrated\n\t\t}\n\t}\n}\n\n/**\n * Migrate commands/ to prompts/ if needed.\n * Works for both regular directories and symlinks.\n */\nfunction migrateCommandsToPrompts(baseDir: string, label: string): boolean {\n\tconst commandsDir = join(baseDir, \"commands\");\n\tconst promptsDir = join(baseDir, \"prompts\");\n\n\tif (existsSync(commandsDir) && !existsSync(promptsDir)) {\n\t\ttry {\n\t\t\trenameSync(commandsDir, promptsDir);\n\t\t\tconsole.log(chalk.green(`Migrated ${label} commands/ → prompts/`));\n\t\t\treturn true;\n\t\t} catch (err) {\n\t\t\tconsole.log(\n\t\t\t\tchalk.yellow(\n\t\t\t\t\t`Warning: Could not migrate ${label} commands/ to prompts/: ${err instanceof Error ? err.message : err}`,\n\t\t\t\t),\n\t\t\t);\n\t\t}\n\t}\n\treturn false;\n}\n\nfunction migrateKeybindingsConfigFile(): void {\n\tconst configPath = join(getAgentDir(), \"keybindings.json\");\n\tif (!existsSync(configPath)) return;\n\n\ttry {\n\t\tconst parsed = JSON.parse(readFileSync(configPath, \"utf-8\")) as unknown;\n\t\tif (typeof parsed !== \"object\" || parsed === null || Array.isArray(parsed)) {\n\t\t\treturn;\n\t\t}\n\t\tconst { config, migrated } = migrateKeybindingsConfig(parsed as Record<string, unknown>);\n\t\tif (!migrated) return;\n\t\twriteFileSync(configPath, `${JSON.stringify(config, null, 2)}\\n`, \"utf-8\");\n\t} catch {\n\t\t// Ignore malformed files during migration\n\t}\n}\n\n/**\n * Move fd/rg binaries from tools/ to bin/ if they exist.\n */\nfunction migrateToolsToBin(): void {\n\tconst agentDir = getAgentDir();\n\tconst toolsDir = join(agentDir, \"tools\");\n\tconst binDir = getBinDir();\n\n\tif (!existsSync(toolsDir)) return;\n\n\tconst binaries = [\"fd\", \"rg\", \"fd.exe\", \"rg.exe\"];\n\tlet movedAny = false;\n\n\tfor (const bin of binaries) {\n\t\tconst oldPath = join(toolsDir, bin);\n\t\tconst newPath = join(binDir, bin);\n\n\t\tif (existsSync(oldPath)) {\n\t\t\tif (!existsSync(binDir)) {\n\t\t\t\tmkdirSync(binDir, { recursive: true });\n\t\t\t}\n\t\t\tif (!existsSync(newPath)) {\n\t\t\t\ttry {\n\t\t\t\t\trenameSync(oldPath, newPath);\n\t\t\t\t\tmovedAny = true;\n\t\t\t\t} catch {\n\t\t\t\t\t// Ignore errors\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\t// Target exists, just delete the old one\n\t\t\t\ttry {\n\t\t\t\t\trmSync?.(oldPath, { force: true });\n\t\t\t\t} catch {\n\t\t\t\t\t// Ignore\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tif (movedAny) {\n\t\tconsole.log(chalk.green(`Migrated managed binaries tools/ → bin/`));\n\t}\n}\n\n/**\n * Check for deprecated hooks/ and tools/ directories.\n * Note: tools/ may contain fd/rg binaries extracted by pi, so only warn if it has other files.\n */\nfunction checkDeprecatedExtensionDirs(baseDir: string, label: string): string[] {\n\tconst hooksDir = join(baseDir, \"hooks\");\n\tconst toolsDir = join(baseDir, \"tools\");\n\tconst warnings: string[] = [];\n\n\tif (existsSync(hooksDir)) {\n\t\twarnings.push(`${label} hooks/ directory found. Hooks have been renamed to extensions.`);\n\t}\n\n\tif (existsSync(toolsDir)) {\n\t\t// Check if tools/ contains anything other than fd/rg (which are auto-extracted binaries)\n\t\ttry {\n\t\t\tconst entries = readdirSync(toolsDir);\n\t\t\tconst customTools = entries.filter((e) => {\n\t\t\t\tconst lower = e.toLowerCase();\n\t\t\t\treturn (\n\t\t\t\t\tlower !== \"fd\" && lower !== \"rg\" && lower !== \"fd.exe\" && lower !== \"rg.exe\" && !e.startsWith(\".\") // Ignore .DS_Store and other hidden files\n\t\t\t\t);\n\t\t\t});\n\t\t\tif (customTools.length > 0) {\n\t\t\t\twarnings.push(\n\t\t\t\t\t`${label} tools/ directory contains custom tools. Custom tools have been merged into extensions.`,\n\t\t\t\t);\n\t\t\t}\n\t\t} catch {\n\t\t\t// Ignore read errors\n\t\t}\n\t}\n\n\treturn warnings;\n}\n\n/**\n * Run extension system migrations (commands→prompts) and collect warnings about deprecated directories.\n */\nfunction migrateExtensionSystem(cwd: string): string[] {\n\tconst agentDir = getAgentDir();\n\tconst projectDir = join(cwd, CONFIG_DIR_NAME);\n\n\t// Migrate commands/ to prompts/\n\tmigrateCommandsToPrompts(agentDir, \"Global\");\n\tmigrateCommandsToPrompts(projectDir, \"Project\");\n\n\t// Check for deprecated directories\n\tconst warnings = [\n\t\t...checkDeprecatedExtensionDirs(agentDir, \"Global\"),\n\t\t...checkDeprecatedExtensionDirs(projectDir, \"Project\"),\n\t];\n\n\treturn warnings;\n}\n\n/**\n * Print deprecation warnings and wait for keypress.\n */\nexport async function showDeprecationWarnings(warnings: string[]): Promise<void> {\n\tif (warnings.length === 0) return;\n\n\tfor (const warning of warnings) {\n\t\tconsole.log(chalk.yellow(`Warning: ${warning}`));\n\t}\n\tconsole.log(chalk.yellow(`\\nMove your extensions to the extensions/ directory.`));\n\tconsole.log(chalk.yellow(`Migration guide: ${MIGRATION_GUIDE_URL}`));\n\tconsole.log(chalk.yellow(`Documentation: ${EXTENSIONS_DOC_URL}`));\n\tconsole.log(chalk.dim(`\\nPress any key to continue...`));\n\n\t// If stdin is not a TTY (pipe/CI), do not enable raw mode and continue.\n\tif (!process.stdin.isTTY) {\n\t\tconsole.log();\n\t\treturn;\n\t}\n\n\tawait new Promise<void>((resolve) => {\n\t\tlet done = false;\n\t\tconst onData = () => finish();\n\t\tconst onSigint = () => finish(true);\n\n\t\t// Restore stdin state on every exit path (keypress or SIGINT).\n\t\tconst finish = (interrupted = false) => {\n\t\t\tif (done) return;\n\t\t\tdone = true;\n\t\t\tprocess.stdin.removeListener(\"data\", onData);\n\t\t\tprocess.removeListener(\"SIGINT\", onSigint);\n\t\t\tprocess.stdin.setRawMode?.(false);\n\t\t\tprocess.stdin.pause();\n\t\t\tif (interrupted) {\n\t\t\t\tconsole.log();\n\t\t\t\tprocess.exit(130);\n\t\t\t}\n\t\t\tresolve();\n\t\t};\n\n\t\tprocess.stdin.setRawMode?.(true);\n\t\tprocess.stdin.resume();\n\t\tprocess.stdin.once(\"data\", onData);\n\t\tprocess.once(\"SIGINT\", onSigint);\n\t});\n\tconsole.log();\n}\n\n/**\n * Run all migrations. Called once on startup.\n *\n * @returns Object with migration results and deprecation warnings\n */\nexport function runMigrations(cwd: string): {\n\tmigratedAuthProviders: string[];\n\tdeprecationWarnings: string[];\n} {\n\tconst migratedAuthProviders = migrateAuthToAuthJson();\n\tmigrateSessionsFromAgentRoot();\n\tmigrateToolsToBin();\n\tmigrateKeybindingsConfigFile();\n\tconst deprecationWarnings = migrateExtensionSystem(cwd);\n\treturn { migratedAuthProviders, deprecationWarnings };\n}\n"]}
+{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../src/migrations.ts"],"names":[],"mappings":"AAAA;;GAEG;AAWH;;;;GAIG;AACH,wBAAgB,qBAAqB,IAAI,MAAM,EAAE,CAoDhD;AAED;;;;;;;;GAQG;AACH,wBAAgB,4BAA4B,IAAI,IAAI,CA+CnD;AA+ID;;GAEG;AACH,wBAAsB,uBAAuB,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CA2C/E;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,GAAG;IAC3C,qBAAqB,EAAE,MAAM,EAAE,CAAC;IAChC,mBAAmB,EAAE,MAAM,EAAE,CAAC;CAC9B,CAOA","sourcesContent":["/**\n * One-time migrations that run on startup.\n */\n\nimport chalk from \"chalk\";\nimport { existsSync, mkdirSync, readdirSync, readFileSync, renameSync, rmSync, writeFileSync } from \"fs\";\nimport { basename, dirname, join } from \"path\";\nimport { CONFIG_DIR_NAME, getAgentDir, getBinDir } from \"./config.js\";\nimport { migrateKeybindingsConfig } from \"./core/keybindings.js\";\n\nconst MIGRATION_GUIDE_URL = \"https://github.com/uglyswap/phi-code/blob/main/packages/coding-agent/CHANGELOG.md\";\nconst EXTENSIONS_DOC_URL = \"https://github.com/uglyswap/phi-code/blob/main/packages/coding-agent/docs/extensions.md\";\n\n/**\n * Migrate legacy oauth.json and settings.json apiKeys to auth.json.\n *\n * @returns Array of provider names that were migrated\n */\nexport function migrateAuthToAuthJson(): string[] {\n\tconst agentDir = getAgentDir();\n\tconst authPath = join(agentDir, \"auth.json\");\n\tconst oauthPath = join(agentDir, \"oauth.json\");\n\tconst settingsPath = join(agentDir, \"settings.json\");\n\n\t// Skip if auth.json already exists\n\tif (existsSync(authPath)) return [];\n\n\tconst migrated: Record<string, unknown> = {};\n\tconst providers: string[] = [];\n\n\t// Migrate oauth.json\n\tif (existsSync(oauthPath)) {\n\t\ttry {\n\t\t\tconst oauth = JSON.parse(readFileSync(oauthPath, \"utf-8\"));\n\t\t\tfor (const [provider, cred] of Object.entries(oauth)) {\n\t\t\t\tmigrated[provider] = { type: \"oauth\", ...(cred as object) };\n\t\t\t\tproviders.push(provider);\n\t\t\t}\n\t\t\trenameSync(oauthPath, `${oauthPath}.migrated`);\n\t\t} catch {\n\t\t\t// Skip on error\n\t\t}\n\t}\n\n\t// Migrate settings.json apiKeys\n\tif (existsSync(settingsPath)) {\n\t\ttry {\n\t\t\tconst content = readFileSync(settingsPath, \"utf-8\");\n\t\t\tconst settings = JSON.parse(content);\n\t\t\tif (settings.apiKeys && typeof settings.apiKeys === \"object\") {\n\t\t\t\tfor (const [provider, key] of Object.entries(settings.apiKeys)) {\n\t\t\t\t\tif (!migrated[provider] && typeof key === \"string\") {\n\t\t\t\t\t\tmigrated[provider] = { type: \"api_key\", key };\n\t\t\t\t\t\tproviders.push(provider);\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tdelete settings.apiKeys;\n\t\t\t\twriteFileSync(settingsPath, JSON.stringify(settings, null, 2));\n\t\t\t}\n\t\t} catch {\n\t\t\t// Skip on error\n\t\t}\n\t}\n\n\tif (Object.keys(migrated).length > 0) {\n\t\tmkdirSync(dirname(authPath), { recursive: true });\n\t\twriteFileSync(authPath, JSON.stringify(migrated, null, 2), { mode: 0o600 });\n\t}\n\n\treturn providers;\n}\n\n/**\n * Migrate sessions from ~/.pi/agent/*.jsonl to proper session directories.\n *\n * Bug in v0.30.0: Sessions were saved to ~/.pi/agent/ instead of\n * ~/.pi/agent/sessions/<encoded-cwd>/. This migration moves them\n * to the correct location based on the cwd in their session header.\n *\n * See: https://github.com/earendil-works/pi-mono/issues/320\n */\nexport function migrateSessionsFromAgentRoot(): void {\n\tconst agentDir = getAgentDir();\n\n\t// Find all .jsonl files directly in agentDir (not in subdirectories)\n\tlet files: string[];\n\ttry {\n\t\tfiles = readdirSync(agentDir)\n\t\t\t.filter((f) => f.endsWith(\".jsonl\"))\n\t\t\t.map((f) => join(agentDir, f));\n\t} catch {\n\t\treturn;\n\t}\n\n\tif (files.length === 0) return;\n\n\tfor (const file of files) {\n\t\ttry {\n\t\t\t// Read first line to get session header\n\t\t\tconst content = readFileSync(file, \"utf8\");\n\t\t\tconst firstLine = content.split(\"\\n\")[0];\n\t\t\tif (!firstLine?.trim()) continue;\n\n\t\t\tconst header = JSON.parse(firstLine);\n\t\t\tif (header.type !== \"session\" || !header.cwd) continue;\n\n\t\t\tconst cwd: string = header.cwd;\n\n\t\t\t// Compute the correct session directory (same encoding as session-manager.ts)\n\t\t\tconst safePath = `--${cwd.replace(/^[/\\\\]/, \"\").replace(/[/\\\\:]/g, \"-\")}--`;\n\t\t\tconst correctDir = join(agentDir, \"sessions\", safePath);\n\n\t\t\t// Create directory if needed\n\t\t\tif (!existsSync(correctDir)) {\n\t\t\t\tmkdirSync(correctDir, { recursive: true });\n\t\t\t}\n\n\t\t\t// Move the file (basename handles both separators per platform)\n\t\t\tconst fileName = basename(file);\n\t\t\tconst newPath = join(correctDir, fileName);\n\n\t\t\tif (existsSync(newPath)) continue; // Skip if target exists\n\n\t\t\trenameSync(file, newPath);\n\t\t} catch {\n\t\t\t// Skip files that can't be migrated\n\t\t}\n\t}\n}\n\n/**\n * Migrate commands/ to prompts/ if needed.\n * Works for both regular directories and symlinks.\n */\nfunction migrateCommandsToPrompts(baseDir: string, label: string): boolean {\n\tconst commandsDir = join(baseDir, \"commands\");\n\tconst promptsDir = join(baseDir, \"prompts\");\n\n\tif (existsSync(commandsDir) && !existsSync(promptsDir)) {\n\t\ttry {\n\t\t\trenameSync(commandsDir, promptsDir);\n\t\t\tconsole.log(chalk.green(`Migrated ${label} commands/ → prompts/`));\n\t\t\treturn true;\n\t\t} catch (err) {\n\t\t\tconsole.log(\n\t\t\t\tchalk.yellow(\n\t\t\t\t\t`Warning: Could not migrate ${label} commands/ to prompts/: ${err instanceof Error ? err.message : err}`,\n\t\t\t\t),\n\t\t\t);\n\t\t}\n\t}\n\treturn false;\n}\n\nfunction migrateKeybindingsConfigFile(): void {\n\tconst configPath = join(getAgentDir(), \"keybindings.json\");\n\tif (!existsSync(configPath)) return;\n\n\ttry {\n\t\tconst parsed = JSON.parse(readFileSync(configPath, \"utf-8\")) as unknown;\n\t\tif (typeof parsed !== \"object\" || parsed === null || Array.isArray(parsed)) {\n\t\t\treturn;\n\t\t}\n\t\tconst { config, migrated } = migrateKeybindingsConfig(parsed as Record<string, unknown>);\n\t\tif (!migrated) return;\n\t\twriteFileSync(configPath, `${JSON.stringify(config, null, 2)}\\n`, \"utf-8\");\n\t} catch {\n\t\t// Ignore malformed files during migration\n\t}\n}\n\n/**\n * Move fd/rg binaries from tools/ to bin/ if they exist.\n */\nfunction migrateToolsToBin(): void {\n\tconst agentDir = getAgentDir();\n\tconst toolsDir = join(agentDir, \"tools\");\n\tconst binDir = getBinDir();\n\n\tif (!existsSync(toolsDir)) return;\n\n\tconst binaries = [\"fd\", \"rg\", \"fd.exe\", \"rg.exe\"];\n\tlet movedAny = false;\n\n\tfor (const bin of binaries) {\n\t\tconst oldPath = join(toolsDir, bin);\n\t\tconst newPath = join(binDir, bin);\n\n\t\tif (existsSync(oldPath)) {\n\t\t\tif (!existsSync(binDir)) {\n\t\t\t\tmkdirSync(binDir, { recursive: true });\n\t\t\t}\n\t\t\tif (!existsSync(newPath)) {\n\t\t\t\ttry {\n\t\t\t\t\trenameSync(oldPath, newPath);\n\t\t\t\t\tmovedAny = true;\n\t\t\t\t} catch {\n\t\t\t\t\t// Ignore errors\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\t// Target exists, just delete the old one\n\t\t\t\ttry {\n\t\t\t\t\trmSync?.(oldPath, { force: true });\n\t\t\t\t} catch {\n\t\t\t\t\t// Ignore\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tif (movedAny) {\n\t\tconsole.log(chalk.green(`Migrated managed binaries tools/ → bin/`));\n\t}\n}\n\n/**\n * Check for deprecated hooks/ and tools/ directories.\n * Note: tools/ may contain fd/rg binaries extracted by pi, so only warn if it has other files.\n */\nfunction checkDeprecatedExtensionDirs(baseDir: string, label: string): string[] {\n\tconst hooksDir = join(baseDir, \"hooks\");\n\tconst toolsDir = join(baseDir, \"tools\");\n\tconst warnings: string[] = [];\n\n\tif (existsSync(hooksDir)) {\n\t\twarnings.push(`${label} hooks/ directory found. Hooks have been renamed to extensions.`);\n\t}\n\n\tif (existsSync(toolsDir)) {\n\t\t// Check if tools/ contains anything other than fd/rg (which are auto-extracted binaries)\n\t\ttry {\n\t\t\tconst entries = readdirSync(toolsDir);\n\t\t\tconst customTools = entries.filter((e) => {\n\t\t\t\tconst lower = e.toLowerCase();\n\t\t\t\treturn (\n\t\t\t\t\tlower !== \"fd\" && lower !== \"rg\" && lower !== \"fd.exe\" && lower !== \"rg.exe\" && !e.startsWith(\".\") // Ignore .DS_Store and other hidden files\n\t\t\t\t);\n\t\t\t});\n\t\t\tif (customTools.length > 0) {\n\t\t\t\twarnings.push(\n\t\t\t\t\t`${label} tools/ directory contains custom tools. Custom tools have been merged into extensions.`,\n\t\t\t\t);\n\t\t\t}\n\t\t} catch {\n\t\t\t// Ignore read errors\n\t\t}\n\t}\n\n\treturn warnings;\n}\n\n/**\n * Run extension system migrations (commands→prompts) and collect warnings about deprecated directories.\n */\nfunction migrateExtensionSystem(cwd: string): string[] {\n\tconst agentDir = getAgentDir();\n\tconst projectDir = join(cwd, CONFIG_DIR_NAME);\n\n\t// Migrate commands/ to prompts/\n\tmigrateCommandsToPrompts(agentDir, \"Global\");\n\tmigrateCommandsToPrompts(projectDir, \"Project\");\n\n\t// Check for deprecated directories\n\tconst warnings = [\n\t\t...checkDeprecatedExtensionDirs(agentDir, \"Global\"),\n\t\t...checkDeprecatedExtensionDirs(projectDir, \"Project\"),\n\t];\n\n\treturn warnings;\n}\n\n/**\n * Print deprecation warnings and wait for keypress.\n */\nexport async function showDeprecationWarnings(warnings: string[]): Promise<void> {\n\tif (warnings.length === 0) return;\n\n\tfor (const warning of warnings) {\n\t\tconsole.log(chalk.yellow(`Warning: ${warning}`));\n\t}\n\tconsole.log(chalk.yellow(`\\nMove your extensions to the extensions/ directory.`));\n\tconsole.log(chalk.yellow(`Migration guide: ${MIGRATION_GUIDE_URL}`));\n\tconsole.log(chalk.yellow(`Documentation: ${EXTENSIONS_DOC_URL}`));\n\tconsole.log(chalk.dim(`\\nPress any key to continue...`));\n\n\t// If stdin is not a TTY (pipe/CI), do not enable raw mode and continue.\n\tif (!process.stdin.isTTY) {\n\t\tconsole.log();\n\t\treturn;\n\t}\n\n\tawait new Promise<void>((resolve) => {\n\t\tlet done = false;\n\t\tconst onData = () => finish();\n\t\tconst onSigint = () => finish(true);\n\n\t\t// Restore stdin state on every exit path (keypress or SIGINT).\n\t\tconst finish = (interrupted = false) => {\n\t\t\tif (done) return;\n\t\t\tdone = true;\n\t\t\tprocess.stdin.removeListener(\"data\", onData);\n\t\t\tprocess.removeListener(\"SIGINT\", onSigint);\n\t\t\tprocess.stdin.setRawMode?.(false);\n\t\t\tprocess.stdin.pause();\n\t\t\tif (interrupted) {\n\t\t\t\tconsole.log();\n\t\t\t\tprocess.exit(130);\n\t\t\t}\n\t\t\tresolve();\n\t\t};\n\n\t\tprocess.stdin.setRawMode?.(true);\n\t\tprocess.stdin.resume();\n\t\tprocess.stdin.once(\"data\", onData);\n\t\tprocess.once(\"SIGINT\", onSigint);\n\t});\n\tconsole.log();\n}\n\n/**\n * Run all migrations. Called once on startup.\n *\n * @returns Object with migration results and deprecation warnings\n */\nexport function runMigrations(cwd: string): {\n\tmigratedAuthProviders: string[];\n\tdeprecationWarnings: string[];\n} {\n\tconst migratedAuthProviders = migrateAuthToAuthJson();\n\tmigrateSessionsFromAgentRoot();\n\tmigrateToolsToBin();\n\tmigrateKeybindingsConfigFile();\n\tconst deprecationWarnings = migrateExtensionSystem(cwd);\n\treturn { migratedAuthProviders, deprecationWarnings };\n}\n"]}

package/dist/migrations.js

@@ -6,8 +6,8 @@ import { existsSync, mkdirSync, readdirSync, readFileSync, renameSync, rmSync, w
 import { basename, dirname, join } from "path";
 import { CONFIG_DIR_NAME, getAgentDir, getBinDir } from "./config.js";
 import { migrateKeybindingsConfig } from "./core/keybindings.js";
-const MIGRATION_GUIDE_URL = "https://github.com/earendil-works/pi-mono/blob/main/packages/coding-agent/CHANGELOG.md#extensions-migration";
-const EXTENSIONS_DOC_URL = "https://github.com/earendil-works/pi-mono/blob/main/packages/coding-agent/docs/extensions.md";
+const MIGRATION_GUIDE_URL = "https://github.com/uglyswap/phi-code/blob/main/packages/coding-agent/CHANGELOG.md";
+const EXTENSIONS_DOC_URL = "https://github.com/uglyswap/phi-code/blob/main/packages/coding-agent/docs/extensions.md";
 /**
  * Migrate legacy oauth.json and settings.json apiKeys to auth.json.
  *

package/dist/migrations.js.map

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* One-time migrations that run on startup.\n */\n\nimport chalk from \"chalk\";\nimport { existsSync, mkdirSync, readdirSync, readFileSync, renameSync, rmSync, writeFileSync } from \"fs\";\nimport { basename, dirname, join } from \"path\";\nimport { CONFIG_DIR_NAME, getAgentDir, getBinDir } from \"./config.js\";\nimport { migrateKeybindingsConfig } from \"./core/keybindings.js\";\n\nconst MIGRATION_GUIDE_URL =\n\t\"https://github.com/earendil-works/pi-mono/blob/main/packages/coding-agent/CHANGELOG.md#extensions-migration\";\nconst EXTENSIONS_DOC_URL =\n\t\"https://github.com/earendil-works/pi-mono/blob/main/packages/coding-agent/docs/extensions.md\";\n\n/**\n * Migrate legacy oauth.json and settings.json apiKeys to auth.json.\n *\n * @returns Array of provider names that were migrated\n */\nexport function migrateAuthToAuthJson(): string[] {\n\tconst agentDir = getAgentDir();\n\tconst authPath = join(agentDir, \"auth.json\");\n\tconst oauthPath = join(agentDir, \"oauth.json\");\n\tconst settingsPath = join(agentDir, \"settings.json\");\n\n\t// Skip if auth.json already exists\n\tif (existsSync(authPath)) return [];\n\n\tconst migrated: Record<string, unknown> = {};\n\tconst providers: string[] = [];\n\n\t// Migrate oauth.json\n\tif (existsSync(oauthPath)) {\n\t\ttry {\n\t\t\tconst oauth = JSON.parse(readFileSync(oauthPath, \"utf-8\"));\n\t\t\tfor (const [provider, cred] of Object.entries(oauth)) {\n\t\t\t\tmigrated[provider] = { type: \"oauth\", ...(cred as object) };\n\t\t\t\tproviders.push(provider);\n\t\t\t}\n\t\t\trenameSync(oauthPath, `${oauthPath}.migrated`);\n\t\t} catch {\n\t\t\t// Skip on error\n\t\t}\n\t}\n\n\t// Migrate settings.json apiKeys\n\tif (existsSync(settingsPath)) {\n\t\ttry {\n\t\t\tconst content = readFileSync(settingsPath, \"utf-8\");\n\t\t\tconst settings = JSON.parse(content);\n\t\t\tif (settings.apiKeys && typeof settings.apiKeys === \"object\") {\n\t\t\t\tfor (const [provider, key] of Object.entries(settings.apiKeys)) {\n\t\t\t\t\tif (!migrated[provider] && typeof key === \"string\") {\n\t\t\t\t\t\tmigrated[provider] = { type: \"api_key\", key };\n\t\t\t\t\t\tproviders.push(provider);\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tdelete settings.apiKeys;\n\t\t\t\twriteFileSync(settingsPath, JSON.stringify(settings, null, 2));\n\t\t\t}\n\t\t} catch {\n\t\t\t// Skip on error\n\t\t}\n\t}\n\n\tif (Object.keys(migrated).length > 0) {\n\t\tmkdirSync(dirname(authPath), { recursive: true });\n\t\twriteFileSync(authPath, JSON.stringify(migrated, null, 2), { mode: 0o600 });\n\t}\n\n\treturn providers;\n}\n\n/**\n * Migrate sessions from ~/.pi/agent/*.jsonl to proper session directories.\n *\n * Bug in v0.30.0: Sessions were saved to ~/.pi/agent/ instead of\n * ~/.pi/agent/sessions/<encoded-cwd>/. This migration moves them\n * to the correct location based on the cwd in their session header.\n *\n * See: https://github.com/earendil-works/pi-mono/issues/320\n */\nexport function migrateSessionsFromAgentRoot(): void {\n\tconst agentDir = getAgentDir();\n\n\t// Find all .jsonl files directly in agentDir (not in subdirectories)\n\tlet files: string[];\n\ttry {\n\t\tfiles = readdirSync(agentDir)\n\t\t\t.filter((f) => f.endsWith(\".jsonl\"))\n\t\t\t.map((f) => join(agentDir, f));\n\t} catch {\n\t\treturn;\n\t}\n\n\tif (files.length === 0) return;\n\n\tfor (const file of files) {\n\t\ttry {\n\t\t\t// Read first line to get session header\n\t\t\tconst content = readFileSync(file, \"utf8\");\n\t\t\tconst firstLine = content.split(\"\\n\")[0];\n\t\t\tif (!firstLine?.trim()) continue;\n\n\t\t\tconst header = JSON.parse(firstLine);\n\t\t\tif (header.type !== \"session\" || !header.cwd) continue;\n\n\t\t\tconst cwd: string = header.cwd;\n\n\t\t\t// Compute the correct session directory (same encoding as session-manager.ts)\n\t\t\tconst safePath = `--${cwd.replace(/^[/\\\\]/, \"\").replace(/[/\\\\:]/g, \"-\")}--`;\n\t\t\tconst correctDir = join(agentDir, \"sessions\", safePath);\n\n\t\t\t// Create directory if needed\n\t\t\tif (!existsSync(correctDir)) {\n\t\t\t\tmkdirSync(correctDir, { recursive: true });\n\t\t\t}\n\n\t\t\t// Move the file (basename handles both separators per platform)\n\t\t\tconst fileName = basename(file);\n\t\t\tconst newPath = join(correctDir, fileName);\n\n\t\t\tif (existsSync(newPath)) continue; // Skip if target exists\n\n\t\t\trenameSync(file, newPath);\n\t\t} catch {\n\t\t\t// Skip files that can't be migrated\n\t\t}\n\t}\n}\n\n/**\n * Migrate commands/ to prompts/ if needed.\n * Works for both regular directories and symlinks.\n */\nfunction migrateCommandsToPrompts(baseDir: string, label: string): boolean {\n\tconst commandsDir = join(baseDir, \"commands\");\n\tconst promptsDir = join(baseDir, \"prompts\");\n\n\tif (existsSync(commandsDir) && !existsSync(promptsDir)) {\n\t\ttry {\n\t\t\trenameSync(commandsDir, promptsDir);\n\t\t\tconsole.log(chalk.green(`Migrated ${label} commands/ → prompts/`));\n\t\t\treturn true;\n\t\t} catch (err) {\n\t\t\tconsole.log(\n\t\t\t\tchalk.yellow(\n\t\t\t\t\t`Warning: Could not migrate ${label} commands/ to prompts/: ${err instanceof Error ? err.message : err}`,\n\t\t\t\t),\n\t\t\t);\n\t\t}\n\t}\n\treturn false;\n}\n\nfunction migrateKeybindingsConfigFile(): void {\n\tconst configPath = join(getAgentDir(), \"keybindings.json\");\n\tif (!existsSync(configPath)) return;\n\n\ttry {\n\t\tconst parsed = JSON.parse(readFileSync(configPath, \"utf-8\")) as unknown;\n\t\tif (typeof parsed !== \"object\" || parsed === null || Array.isArray(parsed)) {\n\t\t\treturn;\n\t\t}\n\t\tconst { config, migrated } = migrateKeybindingsConfig(parsed as Record<string, unknown>);\n\t\tif (!migrated) return;\n\t\twriteFileSync(configPath, `${JSON.stringify(config, null, 2)}\\n`, \"utf-8\");\n\t} catch {\n\t\t// Ignore malformed files during migration\n\t}\n}\n\n/**\n * Move fd/rg binaries from tools/ to bin/ if they exist.\n */\nfunction migrateToolsToBin(): void {\n\tconst agentDir = getAgentDir();\n\tconst toolsDir = join(agentDir, \"tools\");\n\tconst binDir = getBinDir();\n\n\tif (!existsSync(toolsDir)) return;\n\n\tconst binaries = [\"fd\", \"rg\", \"fd.exe\", \"rg.exe\"];\n\tlet movedAny = false;\n\n\tfor (const bin of binaries) {\n\t\tconst oldPath = join(toolsDir, bin);\n\t\tconst newPath = join(binDir, bin);\n\n\t\tif (existsSync(oldPath)) {\n\t\t\tif (!existsSync(binDir)) {\n\t\t\t\tmkdirSync(binDir, { recursive: true });\n\t\t\t}\n\t\t\tif (!existsSync(newPath)) {\n\t\t\t\ttry {\n\t\t\t\t\trenameSync(oldPath, newPath);\n\t\t\t\t\tmovedAny = true;\n\t\t\t\t} catch {\n\t\t\t\t\t// Ignore errors\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\t// Target exists, just delete the old one\n\t\t\t\ttry {\n\t\t\t\t\trmSync?.(oldPath, { force: true });\n\t\t\t\t} catch {\n\t\t\t\t\t// Ignore\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tif (movedAny) {\n\t\tconsole.log(chalk.green(`Migrated managed binaries tools/ → bin/`));\n\t}\n}\n\n/**\n * Check for deprecated hooks/ and tools/ directories.\n * Note: tools/ may contain fd/rg binaries extracted by pi, so only warn if it has other files.\n */\nfunction checkDeprecatedExtensionDirs(baseDir: string, label: string): string[] {\n\tconst hooksDir = join(baseDir, \"hooks\");\n\tconst toolsDir = join(baseDir, \"tools\");\n\tconst warnings: string[] = [];\n\n\tif (existsSync(hooksDir)) {\n\t\twarnings.push(`${label} hooks/ directory found. Hooks have been renamed to extensions.`);\n\t}\n\n\tif (existsSync(toolsDir)) {\n\t\t// Check if tools/ contains anything other than fd/rg (which are auto-extracted binaries)\n\t\ttry {\n\t\t\tconst entries = readdirSync(toolsDir);\n\t\t\tconst customTools = entries.filter((e) => {\n\t\t\t\tconst lower = e.toLowerCase();\n\t\t\t\treturn (\n\t\t\t\t\tlower !== \"fd\" && lower !== \"rg\" && lower !== \"fd.exe\" && lower !== \"rg.exe\" && !e.startsWith(\".\") // Ignore .DS_Store and other hidden files\n\t\t\t\t);\n\t\t\t});\n\t\t\tif (customTools.length > 0) {\n\t\t\t\twarnings.push(\n\t\t\t\t\t`${label} tools/ directory contains custom tools. Custom tools have been merged into extensions.`,\n\t\t\t\t);\n\t\t\t}\n\t\t} catch {\n\t\t\t// Ignore read errors\n\t\t}\n\t}\n\n\treturn warnings;\n}\n\n/**\n * Run extension system migrations (commands→prompts) and collect warnings about deprecated directories.\n */\nfunction migrateExtensionSystem(cwd: string): string[] {\n\tconst agentDir = getAgentDir();\n\tconst projectDir = join(cwd, CONFIG_DIR_NAME);\n\n\t// Migrate commands/ to prompts/\n\tmigrateCommandsToPrompts(agentDir, \"Global\");\n\tmigrateCommandsToPrompts(projectDir, \"Project\");\n\n\t// Check for deprecated directories\n\tconst warnings = [\n\t\t...checkDeprecatedExtensionDirs(agentDir, \"Global\"),\n\t\t...checkDeprecatedExtensionDirs(projectDir, \"Project\"),\n\t];\n\n\treturn warnings;\n}\n\n/**\n * Print deprecation warnings and wait for keypress.\n */\nexport async function showDeprecationWarnings(warnings: string[]): Promise<void> {\n\tif (warnings.length === 0) return;\n\n\tfor (const warning of warnings) {\n\t\tconsole.log(chalk.yellow(`Warning: ${warning}`));\n\t}\n\tconsole.log(chalk.yellow(`\\nMove your extensions to the extensions/ directory.`));\n\tconsole.log(chalk.yellow(`Migration guide: ${MIGRATION_GUIDE_URL}`));\n\tconsole.log(chalk.yellow(`Documentation: ${EXTENSIONS_DOC_URL}`));\n\tconsole.log(chalk.dim(`\\nPress any key to continue...`));\n\n\t// If stdin is not a TTY (pipe/CI), do not enable raw mode and continue.\n\tif (!process.stdin.isTTY) {\n\t\tconsole.log();\n\t\treturn;\n\t}\n\n\tawait new Promise<void>((resolve) => {\n\t\tlet done = false;\n\t\tconst onData = () => finish();\n\t\tconst onSigint = () => finish(true);\n\n\t\t// Restore stdin state on every exit path (keypress or SIGINT).\n\t\tconst finish = (interrupted = false) => {\n\t\t\tif (done) return;\n\t\t\tdone = true;\n\t\t\tprocess.stdin.removeListener(\"data\", onData);\n\t\t\tprocess.removeListener(\"SIGINT\", onSigint);\n\t\t\tprocess.stdin.setRawMode?.(false);\n\t\t\tprocess.stdin.pause();\n\t\t\tif (interrupted) {\n\t\t\t\tconsole.log();\n\t\t\t\tprocess.exit(130);\n\t\t\t}\n\t\t\tresolve();\n\t\t};\n\n\t\tprocess.stdin.setRawMode?.(true);\n\t\tprocess.stdin.resume();\n\t\tprocess.stdin.once(\"data\", onData);\n\t\tprocess.once(\"SIGINT\", onSigint);\n\t});\n\tconsole.log();\n}\n\n/**\n * Run all migrations. Called once on startup.\n *\n * @returns Object with migration results and deprecation warnings\n */\nexport function runMigrations(cwd: string): {\n\tmigratedAuthProviders: string[];\n\tdeprecationWarnings: string[];\n} {\n\tconst migratedAuthProviders = migrateAuthToAuthJson();\n\tmigrateSessionsFromAgentRoot();\n\tmigrateToolsToBin();\n\tmigrateKeybindingsConfigFile();\n\tconst deprecationWarnings = migrateExtensionSystem(cwd);\n\treturn { migratedAuthProviders, deprecationWarnings };\n}\n"]}
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\"settings.json\");\n\n\t// Skip if auth.json already exists\n\tif (existsSync(authPath)) return [];\n\n\tconst migrated: Record<string, unknown> = {};\n\tconst providers: string[] = [];\n\n\t// Migrate oauth.json\n\tif (existsSync(oauthPath)) {\n\t\ttry {\n\t\t\tconst oauth = JSON.parse(readFileSync(oauthPath, \"utf-8\"));\n\t\t\tfor (const [provider, cred] of Object.entries(oauth)) {\n\t\t\t\tmigrated[provider] = { type: \"oauth\", ...(cred as object) };\n\t\t\t\tproviders.push(provider);\n\t\t\t}\n\t\t\trenameSync(oauthPath, `${oauthPath}.migrated`);\n\t\t} catch {\n\t\t\t// Skip on error\n\t\t}\n\t}\n\n\t// Migrate settings.json apiKeys\n\tif (existsSync(settingsPath)) {\n\t\ttry {\n\t\t\tconst content = readFileSync(settingsPath, \"utf-8\");\n\t\t\tconst settings = JSON.parse(content);\n\t\t\tif (settings.apiKeys && typeof settings.apiKeys === \"object\") {\n\t\t\t\tfor (const [provider, key] of Object.entries(settings.apiKeys)) {\n\t\t\t\t\tif (!migrated[provider] && typeof key === \"string\") {\n\t\t\t\t\t\tmigrated[provider] = { type: \"api_key\", key };\n\t\t\t\t\t\tproviders.push(provider);\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tdelete settings.apiKeys;\n\t\t\t\twriteFileSync(settingsPath, JSON.stringify(settings, null, 2));\n\t\t\t}\n\t\t} catch {\n\t\t\t// Skip on error\n\t\t}\n\t}\n\n\tif (Object.keys(migrated).length > 0) {\n\t\tmkdirSync(dirname(authPath), { recursive: true });\n\t\twriteFileSync(authPath, JSON.stringify(migrated, null, 2), { mode: 0o600 });\n\t}\n\n\treturn providers;\n}\n\n/**\n * Migrate sessions from ~/.pi/agent/*.jsonl to proper session directories.\n *\n * Bug in v0.30.0: Sessions were saved to ~/.pi/agent/ instead of\n * ~/.pi/agent/sessions/<encoded-cwd>/. This migration moves them\n * to the correct location based on the cwd in their session header.\n *\n * See: https://github.com/earendil-works/pi-mono/issues/320\n */\nexport function migrateSessionsFromAgentRoot(): void {\n\tconst agentDir = getAgentDir();\n\n\t// Find all .jsonl files directly in agentDir (not in subdirectories)\n\tlet files: string[];\n\ttry {\n\t\tfiles = readdirSync(agentDir)\n\t\t\t.filter((f) => f.endsWith(\".jsonl\"))\n\t\t\t.map((f) => join(agentDir, f));\n\t} catch {\n\t\treturn;\n\t}\n\n\tif (files.length === 0) return;\n\n\tfor (const file of files) {\n\t\ttry {\n\t\t\t// Read first line to get session header\n\t\t\tconst content = readFileSync(file, \"utf8\");\n\t\t\tconst firstLine = content.split(\"\\n\")[0];\n\t\t\tif (!firstLine?.trim()) continue;\n\n\t\t\tconst header = JSON.parse(firstLine);\n\t\t\tif (header.type !== \"session\" || !header.cwd) continue;\n\n\t\t\tconst cwd: string = header.cwd;\n\n\t\t\t// Compute the correct session directory (same encoding as session-manager.ts)\n\t\t\tconst safePath = `--${cwd.replace(/^[/\\\\]/, \"\").replace(/[/\\\\:]/g, \"-\")}--`;\n\t\t\tconst correctDir = join(agentDir, \"sessions\", safePath);\n\n\t\t\t// Create directory if needed\n\t\t\tif (!existsSync(correctDir)) {\n\t\t\t\tmkdirSync(correctDir, { recursive: true });\n\t\t\t}\n\n\t\t\t// Move the file (basename handles both separators per platform)\n\t\t\tconst fileName = basename(file);\n\t\t\tconst newPath = join(correctDir, fileName);\n\n\t\t\tif (existsSync(newPath)) continue; // Skip if target exists\n\n\t\t\trenameSync(file, newPath);\n\t\t} catch {\n\t\t\t// Skip files that can't be migrated\n\t\t}\n\t}\n}\n\n/**\n * Migrate commands/ to prompts/ if needed.\n * Works for both regular directories and symlinks.\n */\nfunction migrateCommandsToPrompts(baseDir: string, label: string): boolean {\n\tconst commandsDir = join(baseDir, \"commands\");\n\tconst promptsDir = join(baseDir, \"prompts\");\n\n\tif (existsSync(commandsDir) && !existsSync(promptsDir)) {\n\t\ttry {\n\t\t\trenameSync(commandsDir, promptsDir);\n\t\t\tconsole.log(chalk.green(`Migrated ${label} commands/ → prompts/`));\n\t\t\treturn true;\n\t\t} catch (err) {\n\t\t\tconsole.log(\n\t\t\t\tchalk.yellow(\n\t\t\t\t\t`Warning: Could not migrate ${label} commands/ to prompts/: ${err instanceof Error ? err.message : err}`,\n\t\t\t\t),\n\t\t\t);\n\t\t}\n\t}\n\treturn false;\n}\n\nfunction migrateKeybindingsConfigFile(): void {\n\tconst configPath = join(getAgentDir(), \"keybindings.json\");\n\tif (!existsSync(configPath)) return;\n\n\ttry {\n\t\tconst parsed = JSON.parse(readFileSync(configPath, \"utf-8\")) as unknown;\n\t\tif (typeof parsed !== \"object\" || parsed === null || Array.isArray(parsed)) {\n\t\t\treturn;\n\t\t}\n\t\tconst { config, migrated } = migrateKeybindingsConfig(parsed as Record<string, unknown>);\n\t\tif (!migrated) return;\n\t\twriteFileSync(configPath, `${JSON.stringify(config, null, 2)}\\n`, \"utf-8\");\n\t} catch {\n\t\t// Ignore malformed files during migration\n\t}\n}\n\n/**\n * Move fd/rg binaries from tools/ to bin/ if they exist.\n */\nfunction migrateToolsToBin(): void {\n\tconst agentDir = getAgentDir();\n\tconst toolsDir = join(agentDir, \"tools\");\n\tconst binDir = getBinDir();\n\n\tif (!existsSync(toolsDir)) return;\n\n\tconst binaries = [\"fd\", \"rg\", \"fd.exe\", \"rg.exe\"];\n\tlet movedAny = false;\n\n\tfor (const bin of binaries) {\n\t\tconst oldPath = join(toolsDir, bin);\n\t\tconst newPath = join(binDir, bin);\n\n\t\tif (existsSync(oldPath)) {\n\t\t\tif (!existsSync(binDir)) {\n\t\t\t\tmkdirSync(binDir, { recursive: true });\n\t\t\t}\n\t\t\tif (!existsSync(newPath)) {\n\t\t\t\ttry {\n\t\t\t\t\trenameSync(oldPath, newPath);\n\t\t\t\t\tmovedAny = true;\n\t\t\t\t} catch {\n\t\t\t\t\t// Ignore errors\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\t// Target exists, just delete the old one\n\t\t\t\ttry {\n\t\t\t\t\trmSync?.(oldPath, { force: true });\n\t\t\t\t} catch {\n\t\t\t\t\t// Ignore\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tif (movedAny) {\n\t\tconsole.log(chalk.green(`Migrated managed binaries tools/ → bin/`));\n\t}\n}\n\n/**\n * Check for deprecated hooks/ and tools/ directories.\n * Note: tools/ may contain fd/rg binaries extracted by pi, so only warn if it has other files.\n */\nfunction checkDeprecatedExtensionDirs(baseDir: string, label: string): string[] {\n\tconst hooksDir = join(baseDir, \"hooks\");\n\tconst toolsDir = join(baseDir, \"tools\");\n\tconst warnings: string[] = [];\n\n\tif (existsSync(hooksDir)) {\n\t\twarnings.push(`${label} hooks/ directory found. Hooks have been renamed to extensions.`);\n\t}\n\n\tif (existsSync(toolsDir)) {\n\t\t// Check if tools/ contains anything other than fd/rg (which are auto-extracted binaries)\n\t\ttry {\n\t\t\tconst entries = readdirSync(toolsDir);\n\t\t\tconst customTools = entries.filter((e) => {\n\t\t\t\tconst lower = e.toLowerCase();\n\t\t\t\treturn (\n\t\t\t\t\tlower !== \"fd\" && lower !== \"rg\" && lower !== \"fd.exe\" && lower !== \"rg.exe\" && !e.startsWith(\".\") // Ignore .DS_Store and other hidden files\n\t\t\t\t);\n\t\t\t});\n\t\t\tif (customTools.length > 0) {\n\t\t\t\twarnings.push(\n\t\t\t\t\t`${label} tools/ directory contains custom tools. Custom tools have been merged into extensions.`,\n\t\t\t\t);\n\t\t\t}\n\t\t} catch {\n\t\t\t// Ignore read errors\n\t\t}\n\t}\n\n\treturn warnings;\n}\n\n/**\n * Run extension system migrations (commands→prompts) and collect warnings about deprecated directories.\n */\nfunction migrateExtensionSystem(cwd: string): string[] {\n\tconst agentDir = getAgentDir();\n\tconst projectDir = join(cwd, CONFIG_DIR_NAME);\n\n\t// Migrate commands/ to prompts/\n\tmigrateCommandsToPrompts(agentDir, \"Global\");\n\tmigrateCommandsToPrompts(projectDir, \"Project\");\n\n\t// Check for deprecated directories\n\tconst warnings = [\n\t\t...checkDeprecatedExtensionDirs(agentDir, \"Global\"),\n\t\t...checkDeprecatedExtensionDirs(projectDir, \"Project\"),\n\t];\n\n\treturn warnings;\n}\n\n/**\n * Print deprecation warnings and wait for keypress.\n */\nexport async function showDeprecationWarnings(warnings: string[]): Promise<void> {\n\tif (warnings.length === 0) return;\n\n\tfor (const warning of warnings) {\n\t\tconsole.log(chalk.yellow(`Warning: ${warning}`));\n\t}\n\tconsole.log(chalk.yellow(`\\nMove your extensions to the extensions/ directory.`));\n\tconsole.log(chalk.yellow(`Migration guide: ${MIGRATION_GUIDE_URL}`));\n\tconsole.log(chalk.yellow(`Documentation: ${EXTENSIONS_DOC_URL}`));\n\tconsole.log(chalk.dim(`\\nPress any key to continue...`));\n\n\t// If stdin is not a TTY (pipe/CI), do not enable raw mode and continue.\n\tif (!process.stdin.isTTY) {\n\t\tconsole.log();\n\t\treturn;\n\t}\n\n\tawait new Promise<void>((resolve) => {\n\t\tlet done = false;\n\t\tconst onData = () => finish();\n\t\tconst onSigint = () => finish(true);\n\n\t\t// Restore stdin state on every exit path (keypress or SIGINT).\n\t\tconst finish = (interrupted = false) => {\n\t\t\tif (done) return;\n\t\t\tdone = true;\n\t\t\tprocess.stdin.removeListener(\"data\", onData);\n\t\t\tprocess.removeListener(\"SIGINT\", onSigint);\n\t\t\tprocess.stdin.setRawMode?.(false);\n\t\t\tprocess.stdin.pause();\n\t\t\tif (interrupted) {\n\t\t\t\tconsole.log();\n\t\t\t\tprocess.exit(130);\n\t\t\t}\n\t\t\tresolve();\n\t\t};\n\n\t\tprocess.stdin.setRawMode?.(true);\n\t\tprocess.stdin.resume();\n\t\tprocess.stdin.once(\"data\", onData);\n\t\tprocess.once(\"SIGINT\", onSigint);\n\t});\n\tconsole.log();\n}\n\n/**\n * Run all migrations. Called once on startup.\n *\n * @returns Object with migration results and deprecation warnings\n */\nexport function runMigrations(cwd: string): {\n\tmigratedAuthProviders: string[];\n\tdeprecationWarnings: string[];\n} {\n\tconst migratedAuthProviders = migrateAuthToAuthJson();\n\tmigrateSessionsFromAgentRoot();\n\tmigrateToolsToBin();\n\tmigrateKeybindingsConfigFile();\n\tconst deprecationWarnings = migrateExtensionSystem(cwd);\n\treturn { migratedAuthProviders, deprecationWarnings };\n}\n"]}

package/extensions/phi/benchmark.ts

@@ -20,7 +20,7 @@
 import { access, mkdir, readFile, writeFile } from "node:fs/promises";
 import { homedir } from "node:os";
 import { join } from "node:path";
-import type { ExtensionAPI, ExtensionContext } from "phi-code";
+import { type ExtensionAPI, type ExtensionContext, getApiKeyStore } from "phi-code";
 
 // ─── Types ───────────────────────────────────────────────────────────────
 
@@ -394,9 +394,19 @@ function getProviderConfigs(): ProviderConfig[] {
 async function getAvailableModels(): Promise<Array<{ id: string; provider: string; baseUrl: string; apiKey: string }>> {
 	const models: Array<{ id: string; provider: string; baseUrl: string; apiKey: string }> = [];
 
-	// 1. Cloud providers via env vars
+	// 1. Cloud providers via env vars, falling back to keys stored in
+	// models.json via /setup or /keys (the store resolves env-var names and
+	// "!cmd" values the same way the model registry does at request time).
+	const store = getApiKeyStore();
 	for (const provider of getProviderConfigs()) {
-		const apiKey = process.env[provider.envVar];
+		let apiKey = process.env[provider.envVar];
+		if (!apiKey) {
+			try {
+				apiKey = store.getKey(provider.name);
+			} catch {
+				/* unreadable models.json — env-only behavior */
+			}
+		}
 		if (!apiKey) continue;
 
 		for (const modelId of provider.models) {
@@ -409,33 +419,27 @@ async function getAvailableModels(): Promise<Array<{ id: string; provider: strin
 		}
 	}
 
-	// 2. Local providers (LM Studio, Ollama) — auto-detect via models.json
-	const { join } = await import("node:path");
-	const { homedir } = await import("node:os");
-	const { readFileSync, existsSync } = await import("node:fs");
-
-	const modelsJsonPath = join(homedir(), ".phi", "agent", "models.json");
-	if (existsSync(modelsJsonPath)) {
-		try {
-			const config = JSON.parse(readFileSync(modelsJsonPath, "utf-8"));
-			if (config.providers) {
-				for (const [id, providerConfig] of Object.entries<any>(config.providers)) {
-					const baseUrl = providerConfig.baseUrl || "";
-					const apiKey = providerConfig.apiKey || "local";
-					if (providerConfig.models?.length > 0) {
-						for (const m of providerConfig.models) {
-							const modelId = typeof m === "string" ? m : m.id;
-							// Skip if already added from env vars
-							if (!models.some((existing) => existing.id === modelId && existing.baseUrl === baseUrl)) {
-								models.push({ id: modelId, provider: id, baseUrl, apiKey });
-							}
-						}
-					}
+	// 2. Local providers (LM Studio, Ollama) — auto-detect via models.json,
+	// read through ApiKeyStore so // comments and trailing commas are
+	// tolerated and PHI_AGENT_DIR overrides are honored.
+	try {
+		for (const id of store.listProviders()) {
+			const providerConfig = store.getProvider(id);
+			if (!providerConfig) continue;
+			const baseUrl = providerConfig.baseUrl || "";
+			const apiKey = store.getKey(id) || "local";
+			if (!providerConfig.models || providerConfig.models.length === 0) continue;
+			for (const m of providerConfig.models) {
+				const modelId = typeof m === "string" ? m : (m as { id?: string }).id;
+				if (!modelId) continue;
+				// Skip if already added from env vars
+				if (!models.some((existing) => existing.id === modelId && existing.baseUrl === baseUrl)) {
+					models.push({ id: modelId, provider: id, baseUrl, apiKey });
 				}
 			}
-		} catch {
-			/* ignore parse errors */
 		}
+	} catch {
+		/* ignore unreadable models.json */
 	}
 
 	// 3. Try to detect LM Studio (port 1234) and Ollama (port 11434) directly
@@ -745,7 +749,7 @@ Scoring: S (80+), A (65+), B (50+), C (35+), D (<35)`,
 					.map((p) => `  ${p.envVar}: ${process.env[p.envVar] ? "set but no models configured" : "not set"}`)
 					.join("\n");
 				ctx.ui.notify(
-					`❌ No benchmarkable models found.\n\nProvider status:\n${hint}\n\nSet at least one API key with known models.`,
+					`❌ No benchmarkable models found.\n\nProvider status (env):\n${hint}\n\nSet at least one API key with known models (env var, /setup or /keys).`,
 					"warning",
 				);
 				return;

package/extensions/phi/memory.ts

@@ -689,7 +689,7 @@ violates project rules.
 			const locations = [
 				join(process.cwd(), "AGENTS.md"),
 				join(process.cwd(), ".phi", "AGENTS.md"),
-				join(sigmaMemory.config.memoryDir, "AGENTS.md"),
+				join(sigmaMemory.getConfig().memoryDir, "AGENTS.md"),
 			];
 
 			for (const agentsPath of locations) {

package/extensions/phi/models.ts

@@ -159,10 +159,11 @@ async function refreshOne(
 	resolvedApiKey?: string,
 ): Promise<RefreshOutcome> {
 	const stored = store.getProvider(providerId);
-	const storedKey =
-		stored?.apiKey && !stored.apiKey.startsWith("$") && stored.apiKey !== "local" ? stored.apiKey : undefined;
-	// Prefer the key stored in models.json, else the one resolved from
+	// Prefer the key stored in models.json (resolved through the store: env-var
+	// names and "!cmd" values yield a usable key, "local" is a sentinel, an
+	// unresolved "$NAME" yields undefined), else the one resolved from
 	// auth.json/env by the model registry (providers set up via /auth only).
+	const storedKey = stored?.apiKey && stored.apiKey !== "local" ? store.getKey(providerId) : undefined;
 	const apiKey = storedKey ?? resolvedApiKey;
 
 	// OpenCode Go is a provider pair the generic fetchLiveModels path can't express