@pharmatools/pubcrawl 2.4.0 → 2.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/http.js +1 -1
- package/dist/index.js +1 -1
- package/dist/lib/europepmc.d.ts.map +1 -1
- package/dist/lib/europepmc.js +8 -1
- package/dist/lib/europepmc.js.map +1 -1
- package/dist/types.d.ts +1 -1
- package/dist/types.d.ts.map +1 -1
- package/package.json +2 -2
- package/server.json +2 -2
package/dist/http.js
CHANGED
package/dist/index.js
CHANGED
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@@ -19,7 +19,7 @@ import { registerTrialsSearchTool } from "./tools/trials-search.js";
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import { registerTrialDetailTool } from "./tools/trials-detail.js";
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const server = new McpServer({
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name: "pubcrawl",
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-
version: "2.
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+
version: "2.5.0",
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});
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// Configure NCBI API key if available (10 req/s vs 3 req/s)
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if (process.env.NCBI_API_KEY) {
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"europepmc.d.ts","sourceRoot":"","sources":["../../src/lib/europepmc.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAuC/C;;;;;;GAMG;AACH,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAC9B,gBAAgB,
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1
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+
{"version":3,"file":"europepmc.d.ts","sourceRoot":"","sources":["../../src/lib/europepmc.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAuC/C;;;;;;GAMG;AACH,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAC9B,gBAAgB,CAmClB;AAED,wBAAsB,eAAe,CAAC,MAAM,EAAE;IAC5C,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,IAAI,CAAC,EAAE,WAAW,GAAG,MAAM,GAAG,OAAO,CAAC;IACtC,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB,cAAc,CAAC,EAAE,OAAO,CAAC;CAC1B,GAAG,OAAO,CAAC;IAAE,OAAO,EAAE,gBAAgB,EAAE,CAAC;IAAC,WAAW,EAAE,MAAM,CAAA;CAAE,CAAC,CAiChE"}
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package/dist/lib/europepmc.js
CHANGED
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@@ -42,6 +42,13 @@ export function formatEuropePmcResult(result) {
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const journalInfo = (result.journalInfo ?? {});
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const journal = (journalInfo.journal ?? {});
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const abstractText = String(result.abstractText ?? "");
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45
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// Europe PMC returns a single `authorString` ("Smith J, Doe A, Brown C.").
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// Split into an array so the shape matches search_pubmed's `authors: string[]`
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// — consistency downstream consumers (and PubCrawl's own tools) rely on.
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const authorString = String(result.authorString ?? "").replace(/\.\s*$/, "");
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const authors = authorString
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? authorString.split(",").map((a) => a.trim()).filter(Boolean)
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: [];
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return {
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id,
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source,
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@@ -49,7 +56,7 @@ export function formatEuropePmcResult(result) {
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pmcid: result.pmcid ? String(result.pmcid) : "",
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doi: result.doi ? String(result.doi) : "",
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title: String(result.title ?? ""),
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-
authors
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authors,
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journal: String(journal.title ?? "") || String(journal.isoabbreviation ?? ""),
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year: String(result.pubYear ?? journalInfo.yearOfPublication ?? ""),
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is_preprint: source === "PPR",
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"europepmc.js","sourceRoot":"","sources":["../../src/lib/europepmc.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,YAAY,CAAC;AAGxC,MAAM,QAAQ,GAAG,kDAAkD,CAAC;AACpE,MAAM,KAAK,GAAG,qBAAqB,CAAC;AACpC,MAAM,gBAAgB,GAAG,GAAG,CAAC;AAC7B,MAAM,UAAU,GAAG,KAAK,CAAC;AAEzB,IAAI,eAAe,GAAG,CAAC,CAAC;AAExB,KAAK,UAAU,gBAAgB,CAAC,GAAW;IACzC,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IACvB,MAAM,OAAO,GAAG,GAAG,GAAG,eAAe,CAAC;IAEtC,IAAI,OAAO,GAAG,gBAAgB,EAAE,CAAC;QAC/B,MAAM,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,GAAG,OAAO,CAAC,CAAC,CAAC;IAClF,CAAC;IAED,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAE7B,MAAM,UAAU,GAAG,IAAI,eAAe,EAAE,CAAC;IACzC,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,UAAU,CAAC,CAAC;IAEjE,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC;QACjE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAC;QACrF,CAAC;QACD,OAAO,QAAQ,CAAC;IAClB,CAAC;YAAS,CAAC;QACT,YAAY,CAAC,OAAO,CAAC,CAAC;IACxB,CAAC;AACH,CAAC;AAED,MAAM,QAAQ,GAAuC;IACnD,SAAS,EAAE,SAAS;IACpB,IAAI,EAAE,gBAAgB;IACtB,KAAK,EAAE,YAAY;CACpB,CAAC;AAEF;;;;;;GAMG;AACH,MAAM,UAAU,qBAAqB,CACnC,MAA+B;IAE/B,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC;IAC3C,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC;IACnC,MAAM,WAAW,GAAG,CAAC,MAAM,CAAC,WAAW,IAAI,EAAE,CAA4B,CAAC;IAC1E,MAAM,OAAO,GAAG,CAAC,WAAW,CAAC,OAAO,IAAI,EAAE,CAA4B,CAAC;IACvE,MAAM,YAAY,GAAG,MAAM,CAAC,MAAM,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC;
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1
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{"version":3,"file":"europepmc.js","sourceRoot":"","sources":["../../src/lib/europepmc.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,YAAY,CAAC;AAGxC,MAAM,QAAQ,GAAG,kDAAkD,CAAC;AACpE,MAAM,KAAK,GAAG,qBAAqB,CAAC;AACpC,MAAM,gBAAgB,GAAG,GAAG,CAAC;AAC7B,MAAM,UAAU,GAAG,KAAK,CAAC;AAEzB,IAAI,eAAe,GAAG,CAAC,CAAC;AAExB,KAAK,UAAU,gBAAgB,CAAC,GAAW;IACzC,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IACvB,MAAM,OAAO,GAAG,GAAG,GAAG,eAAe,CAAC;IAEtC,IAAI,OAAO,GAAG,gBAAgB,EAAE,CAAC;QAC/B,MAAM,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,GAAG,OAAO,CAAC,CAAC,CAAC;IAClF,CAAC;IAED,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAE7B,MAAM,UAAU,GAAG,IAAI,eAAe,EAAE,CAAC;IACzC,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,UAAU,CAAC,CAAC;IAEjE,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC;QACjE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAC;QACrF,CAAC;QACD,OAAO,QAAQ,CAAC;IAClB,CAAC;YAAS,CAAC;QACT,YAAY,CAAC,OAAO,CAAC,CAAC;IACxB,CAAC;AACH,CAAC;AAED,MAAM,QAAQ,GAAuC;IACnD,SAAS,EAAE,SAAS;IACpB,IAAI,EAAE,gBAAgB;IACtB,KAAK,EAAE,YAAY;CACpB,CAAC;AAEF;;;;;;GAMG;AACH,MAAM,UAAU,qBAAqB,CACnC,MAA+B;IAE/B,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC;IAC3C,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC;IACnC,MAAM,WAAW,GAAG,CAAC,MAAM,CAAC,WAAW,IAAI,EAAE,CAA4B,CAAC;IAC1E,MAAM,OAAO,GAAG,CAAC,WAAW,CAAC,OAAO,IAAI,EAAE,CAA4B,CAAC;IACvE,MAAM,YAAY,GAAG,MAAM,CAAC,MAAM,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC;IACvD,2EAA2E;IAC3E,+EAA+E;IAC/E,yEAAyE;IACzE,MAAM,YAAY,GAAG,MAAM,CAAC,MAAM,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;IAC7E,MAAM,OAAO,GAAG,YAAY;QAC1B,CAAC,CAAC,YAAY,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC;QAC9D,CAAC,CAAC,EAAE,CAAC;IAEP,OAAO;QACL,EAAE;QACF,MAAM;QACN,IAAI,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE;QAC5C,KAAK,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE;QAC/C,GAAG,EAAE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE;QACzC,KAAK,EAAE,MAAM,CAAC,MAAM,CAAC,KAAK,IAAI,EAAE,CAAC;QACjC,OAAO;QACP,OAAO,EACL,MAAM,CAAC,OAAO,CAAC,KAAK,IAAI,EAAE,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,eAAe,IAAI,EAAE,CAAC;QACtE,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,OAAO,IAAI,WAAW,CAAC,iBAAiB,IAAI,EAAE,CAAC;QACnE,WAAW,EAAE,MAAM,KAAK,KAAK;QAC7B,cAAc,EAAE,MAAM,CAAC,YAAY,KAAK,GAAG;QAC3C,cAAc,EACZ,MAAM,CAAC,YAAY,IAAI,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC;QAC/D,6EAA6E;QAC7E,0DAA0D;QAC1D,aAAa,EAAE,MAAM,CAAC,MAAM,KAAK,GAAG,IAAI,CAAC,CAAC,MAAM,CAAC,KAAK;QACtD,gBAAgB,EAAE,YAAY,CAAC,CAAC,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE;QAChE,GAAG,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC,CAAC,iCAAiC,MAAM,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE;KACzE,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,MAMrC;IACC,MAAM,QAAQ,GAAG,eAAe,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC;IACzD,MAAM,MAAM,GAAG,KAAK,CAAC,GAAG,CAAuD,QAAQ,CAAC,CAAC;IACzF,IAAI,MAAM;QAAE,OAAO,MAAM,CAAC;IAE1B,2CAA2C;IAC3C,IAAI,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC;IACzB,IAAI,MAAM,CAAC,aAAa;QAAE,KAAK,IAAI,gBAAgB,CAAC;IACpD,IAAI,MAAM,CAAC,cAAc;QAAE,KAAK,IAAI,sBAAsB,CAAC;IAE3D,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,GAAG,QAAQ,SAAS,CAAC,CAAC;IAC1C,GAAG,CAAC,YAAY,CAAC,GAAG,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC;IACrC,GAAG,CAAC,YAAY,CAAC,GAAG,CAAC,YAAY,EAAE,MAAM,CAAC,CAAC;IAC3C,GAAG,CAAC,YAAY,CAAC,GAAG,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IACvC,GAAG,CAAC,YAAY,CAAC,GAAG,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,UAAU,IAAI,EAAE,CAAC,CAAC,CAAC;IAClE,GAAG,CAAC,YAAY,CAAC,GAAG,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC;IAErC,MAAM,IAAI,GAAG,QAAQ,CAAC,MAAM,CAAC,IAAI,IAAI,WAAW,CAAC,CAAC;IAClD,IAAI,IAAI;QAAE,GAAG,CAAC,YAAY,CAAC,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC;IAE7C,MAAM,QAAQ,GAAG,MAAM,gBAAgB,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,CAAC;IACxD,MAAM,IAAI,GAAG,CAAC,MAAM,QAAQ,CAAC,IAAI,EAAE,CAA4B,CAAC;IAEhE,MAAM,UAAU,GAAG,CAAC,IAAI,CAAC,UAAU,IAAI,EAAE,CAA4B,CAAC;IACtE,MAAM,UAAU,GAAG,CAAC,UAAU,CAAC,MAAM,IAAI,EAAE,CAAmC,CAAC;IAE/E,MAAM,MAAM,GAAG;QACb,OAAO,EAAE,UAAU,CAAC,GAAG,CAAC,qBAAqB,CAAC;QAC9C,WAAW,EAAE,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;KAC/D,CAAC;IAEF,KAAK,CAAC,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACxC,OAAO,MAAM,CAAC;AAChB,CAAC"}
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package/dist/types.d.ts
CHANGED
package/dist/types.d.ts.map
CHANGED
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@@ -1 +1 @@
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{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../src/types.ts"],"names":[],"mappings":"AAAA,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,GAAG,EAAE,MAAM,CAAC;CACb;AAED,MAAM,WAAW,gBAAgB;IAC/B,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,GAAG,EAAE,MAAM,CAAC;IACZ,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,CAAC;
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+
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|
package/package.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@pharmatools/pubcrawl",
|
|
3
|
-
"version": "2.
|
|
4
|
-
"description": "MCP server for PubMed literature search
|
|
3
|
+
"version": "2.5.0",
|
|
4
|
+
"description": "MCP server for PubMed & Europe PMC literature search, US/UK drug labelling, and clinical trials — built by PharmaTools.AI",
|
|
5
5
|
"mcpName": "io.github.nickjlamb/pubcrawl",
|
|
6
6
|
"author": "PharmaTools.AI",
|
|
7
7
|
"license": "MIT",
|
package/server.json
CHANGED
|
@@ -6,12 +6,12 @@
|
|
|
6
6
|
"url": "https://github.com/nickjlamb/pubcrawl",
|
|
7
7
|
"source": "github"
|
|
8
8
|
},
|
|
9
|
-
"version": "2.
|
|
9
|
+
"version": "2.5.0",
|
|
10
10
|
"packages": [
|
|
11
11
|
{
|
|
12
12
|
"registryType": "npm",
|
|
13
13
|
"identifier": "@pharmatools/pubcrawl",
|
|
14
|
-
"version": "2.
|
|
14
|
+
"version": "2.5.0",
|
|
15
15
|
"transport": {
|
|
16
16
|
"type": "stdio"
|
|
17
17
|
},
|