@phamvuhoang/otto-core 0.33.0 → 0.34.0

package/dist/codebase-memory-adapter.d.ts

@@ -0,0 +1,106 @@
+import type { ToolDefinition } from "./tools.js";
+/**
+ * Codebase Memory adapter (P26 spike, Task 2). Otto owns a local MCP stdio
+ * child (`codebase-memory`) that builds and queries a code-knowledge graph
+ * for the target repo — architecture summaries, call-path tracing, symbol
+ * search — without any runtime network access. The adapter follows the same
+ * house pattern as {@link ./headroom-adapter.js}: a {@link ToolDefinition}
+ * factory for the `.otto/tools/` registry (`otto-tools list/why/health`,
+ * policy authorization) plus an injectable transport ({@link CbmRunner}) so
+ * unit tests never spawn a real process.
+ *
+ * The tool is opt-in and inert until a repo registers + enables it:
+ * `stages: []` (no default injection into any stage template), `enabled:
+ * false` (registry-level off switch), `networkDomains: []` (no runtime
+ * network — the graph lives entirely in a local cache), and `writeRoots:
+ * [".codebase-memory"]` (writes confined to its own cache directory).
+ */
+/** One JSON-RPC request to the codebase-memory MCP child. */
+export type CbmRequest = {
+    operation: string;
+    params: Record<string, unknown>;
+};
+/** The structured response from a {@link CbmRunner} call. */
+export type CbmResponse = {
+    ok: boolean;
+    result?: unknown;
+    error?: string;
+};
+/**
+ * The injectable transport the adapter drives. The real implementation
+ * ({@link createStdioCbmRunner}) spawns the MCP child over stdio; unit tests
+ * inject a stub — this contract is the seam.
+ */
+export type CbmRunner = {
+    available(): boolean;
+    call(req: CbmRequest): CbmResponse;
+};
+/**
+ * The {@link ToolDefinition} a repo drops into `.otto/tools/codebase-memory.json`
+ * (mirrors {@link ./headroom-adapter.js}'s `headroomToolDefinition`). Declares
+ * no runtime network, cache-only writes, and the operation allowlist
+ * (`operations`) that a caller can gate calls against. `stages: []` and
+ * `enabled: false` keep it fully opt-in — a bare repo behaves as before.
+ */
+export declare function codebaseMemoryToolDefinition(command?: string): ToolDefinition;
+/**
+ * Real transport: a minimal newline-delimited JSON-RPC client over stdio.
+ * Sends an `initialize` handshake followed by one `tools/call`, both
+ * newline-framed, and reads the child's stdout for the matching response.
+ * Synchronous (`spawnSync`) to fit the same render/`@spill`-boundary
+ * constraints as the Headroom runners. Only exercised under the gated e2e —
+ * unit tests inject a {@link CbmRunner} stub instead.
+ */
+/**
+ * Split a command string into argv, respecting single/double quotes so a
+ * binary path containing spaces (e.g. `"/opt/My Tools/codebase-memory" serve`)
+ * stays one token instead of being shredded by a naive `split(" ")`. Minimal:
+ * no escape sequences or environment expansion. Pure.
+ */
+export declare function tokenizeCommand(command: string): string[];
+export declare function createStdioCbmRunner(command: string, cwd: string, timeoutMs: number): CbmRunner;
+/**
+ * Identity stamp a persisted `.codebase-memory/` index carries, so a later
+ * run can tell whether it's safe to trust without re-indexing: which
+ * workspace it was built for, the source revision it was built at, whether
+ * the worktree was dirty at build time, and tool/index bookkeeping.
+ */
+export type CbmIndexIdentity = {
+    workspace: string;
+    sourceRevision: string;
+    worktreeDirty: boolean;
+    toolVersion: string;
+    indexStatus: string;
+    indexedAt: string;
+};
+/**
+ * Freshness verdict for a persisted index against the current workspace
+ * state: `absent` (no index or no current state to compare), `wrong-project`
+ * (index was built for a different workspace), `stale` (revision drift or a
+ * dirty worktree since indexing), `fresh` (safe to trust as-is).
+ */
+export type IndexFreshness = "fresh" | "stale" | "absent" | "wrong-project";
+/**
+ * Classifies a persisted index's freshness against the current workspace
+ * identity. Pure — no filesystem or process access; callers gather
+ * `current`/`index` themselves.
+ */
+export declare function classifyIndexFreshness(current: {
+    workspace: string;
+    sourceRevision: string;
+    worktreeDirty: boolean;
+} | null, index: CbmIndexIdentity | null): IndexFreshness;
+/**
+ * New files written during a run (`after \ before`) plus which of those
+ * escaped the tool's declared write roots — i.e. wrote outside
+ * `.codebase-memory/` (see `writeRoots` on {@link codebaseMemoryToolDefinition}).
+ * A declared root matches itself exactly or any path under `root + "/"`, so
+ * a root doesn't accidentally prefix-match a sibling like `.codebase-memory-foo`.
+ */
+export type WriteInventory = {
+    files: string[];
+    escaped: string[];
+};
+/** Pure diff of two file-path snapshots against a set of declared write roots. */
+export declare function diffWriteInventory(before: string[], after: string[], declaredRoots: string[]): WriteInventory;
+//# sourceMappingURL=codebase-memory-adapter.d.ts.map

package/dist/codebase-memory-adapter.d.ts.map

@@ -0,0 +1 @@
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package/dist/codebase-memory-adapter.js

@@ -0,0 +1,142 @@
+import { spawnSync } from "node:child_process";
+/** Read-only operations the codebase-memory server exposes. */
+const READ_OPS = [
+    "index_status",
+    "get_graph_schema",
+    "get_architecture",
+    "search_graph",
+    "trace_path",
+    "detect_changes",
+    "search_code",
+    "get_code_snippet",
+];
+/** The full operation allowlist: one write op + the read-only surface. */
+const OPERATIONS = [
+    { name: "index_repository", write: true },
+    ...READ_OPS.map((name) => ({ name, write: false })),
+];
+/**
+ * The {@link ToolDefinition} a repo drops into `.otto/tools/codebase-memory.json`
+ * (mirrors {@link ./headroom-adapter.js}'s `headroomToolDefinition`). Declares
+ * no runtime network, cache-only writes, and the operation allowlist
+ * (`operations`) that a caller can gate calls against. `stages: []` and
+ * `enabled: false` keep it fully opt-in — a bare repo behaves as before.
+ */
+export function codebaseMemoryToolDefinition(command = "codebase-memory") {
+    return {
+        name: "codebase-memory",
+        kind: "mcp",
+        description: "Local code-knowledge graph via an Otto-owned MCP stdio child.",
+        capabilities: [
+            "architecture",
+            "call-path",
+            "change-impact",
+            "symbol-search",
+        ],
+        stages: [], // opt-in via config; no default injection
+        command,
+        env: [],
+        networkDomains: [], // no runtime network
+        writeRoots: [".codebase-memory"], // cache-only
+        secretRefs: [],
+        timeoutMs: 120_000,
+        healthCheck: `${command} --version`,
+        approvalActions: [],
+        enabled: false,
+        operations: OPERATIONS,
+    };
+}
+/**
+ * Real transport: a minimal newline-delimited JSON-RPC client over stdio.
+ * Sends an `initialize` handshake followed by one `tools/call`, both
+ * newline-framed, and reads the child's stdout for the matching response.
+ * Synchronous (`spawnSync`) to fit the same render/`@spill`-boundary
+ * constraints as the Headroom runners. Only exercised under the gated e2e —
+ * unit tests inject a {@link CbmRunner} stub instead.
+ */
+/**
+ * Split a command string into argv, respecting single/double quotes so a
+ * binary path containing spaces (e.g. `"/opt/My Tools/codebase-memory" serve`)
+ * stays one token instead of being shredded by a naive `split(" ")`. Minimal:
+ * no escape sequences or environment expansion. Pure.
+ */
+export function tokenizeCommand(command) {
+    const tokens = [];
+    const re = /"([^"]*)"|'([^']*)'|(\S+)/g;
+    let m;
+    while ((m = re.exec(command)) !== null) {
+        tokens.push(m[1] ?? m[2] ?? m[3]);
+    }
+    return tokens;
+}
+export function createStdioCbmRunner(command, cwd, timeoutMs) {
+    const [bin, ...args] = tokenizeCommand(command);
+    const available = () => {
+        const probe = spawnSync(bin, ["--version"], { cwd, timeout: 5000 });
+        return probe.status === 0;
+    };
+    // One-shot request/response: initialize handshake + tools/call, newline-framed.
+    const call = (req) => {
+        const init = JSON.stringify({
+            jsonrpc: "2.0",
+            id: 1,
+            method: "initialize",
+            params: {},
+        });
+        const callMsg = JSON.stringify({
+            jsonrpc: "2.0",
+            id: 2,
+            method: "tools/call",
+            params: { name: req.operation, arguments: req.params },
+        });
+        const proc = spawnSync(bin, args, {
+            cwd,
+            timeout: timeoutMs,
+            input: `${init}\n${callMsg}\n`,
+        });
+        if (proc.status !== 0)
+            return { ok: false, error: proc.stderr?.toString() || "child failed" };
+        const lines = proc.stdout.toString().split("\n").filter(Boolean);
+        for (const line of lines) {
+            try {
+                const msg = JSON.parse(line);
+                if (msg.id === 2 && "result" in msg)
+                    return { ok: true, result: msg.result };
+                if (msg.id === 2 && "error" in msg)
+                    return { ok: false, error: String(msg.error.message ?? msg.error) };
+            }
+            catch {
+                /* ignore non-JSON banner lines */
+            }
+        }
+        return { ok: false, error: "no response for tools/call" };
+    };
+    return { available, call };
+}
+/**
+ * Classifies a persisted index's freshness against the current workspace
+ * identity. Pure — no filesystem or process access; callers gather
+ * `current`/`index` themselves.
+ */
+export function classifyIndexFreshness(current, index) {
+    if (!index || !current)
+        return "absent";
+    if (index.workspace !== current.workspace)
+        return "wrong-project";
+    if (index.sourceRevision !== current.sourceRevision || current.worktreeDirty)
+        return "stale";
+    return "fresh";
+}
+/** Pure diff of two file-path snapshots against a set of declared write roots. */
+export function diffWriteInventory(before, after, declaredRoots) {
+    const beforeSet = new Set(before);
+    const files = after.filter((f) => !beforeSet.has(f));
+    const under = (f) => declaredRoots.some((raw) => {
+        // Normalize a trailing slash so a root declared as `.codebase-memory/`
+        // classifies the bare directory the same as `.codebase-memory` does.
+        const r = raw.replace(/\/+$/, "");
+        return f === r || f.startsWith(`${r}/`);
+    });
+    return { files, escaped: files.filter((f) => !under(f)) };
+}
+//# sourceMappingURL=codebase-memory-adapter.js.map

package/dist/codebase-memory-adapter.js.map

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package/dist/context-compressor.d.ts

@@ -173,6 +173,17 @@ export declare function summarizeToolCompression(usages: ToolUsage[]): {
     tokensSaved: number;
     retrievals: number;
 };
+/**
+ * Summarize the codebase-memory retrieval {@link ToolUsage} records on a run's
+ * stage records (name `codebase-memory`) — what a context report reads to show
+ * graph-retrieval evidence (P26). Pure. `undefined` when no such usage is
+ * present, so a non-CBM run's report omits the section entirely.
+ */
+export declare function summarizeGraphRetrieval(usages: ToolUsage[]): {
+    queries: number;
+    tokensAvoided: number;
+    fallbacks: number;
+} | undefined;
 /** One-line human summary of compression savings for the context report. Pure. */
 export declare function formatCompressionSummary(s: CompressionSummary): string;
 //# sourceMappingURL=context-compressor.d.ts.map

package/dist/context-compressor.d.ts.map

@@ -1 +1 @@
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package/dist/context-compressor.js

@@ -259,6 +259,22 @@ export function summarizeToolCompression(usages) {
     }
     return { invocations, tokensSaved, retrievals };
 }
+/**
+ * Summarize the codebase-memory retrieval {@link ToolUsage} records on a run's
+ * stage records (name `codebase-memory`) — what a context report reads to show
+ * graph-retrieval evidence (P26). Pure. `undefined` when no such usage is
+ * present, so a non-CBM run's report omits the section entirely.
+ */
+export function summarizeGraphRetrieval(usages) {
+    const graph = usages.filter((u) => u.name === "codebase-memory");
+    if (graph.length === 0)
+        return undefined;
+    return {
+        queries: graph.length,
+        tokensAvoided: graph.reduce((s, u) => s + (u.tokensAvoided ?? 0), 0),
+        fallbacks: graph.filter((u) => u.fallbackReason).length,
+    };
+}
 /** One-line human summary of compression savings for the context report. Pure. */
 export function formatCompressionSummary(s) {
     if (s.invocations === 0)

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package/dist/eval-run.d.ts

@@ -43,6 +43,12 @@ export type EvalDeps = {
     readManifest: (workspaceDir: string, runId: string) => RunManifest | null;
     readStageRecords: (workspaceDir: string, runId: string) => StageRecord[];
     runChecks: (checks: BenchmarkCheck[], cwd: string) => CheckResult[];
+    /** Known impacted-file set a fixture declares (its `impact.json`); `[]` when
+     *  the fixture declares none, which leaves impact recall at 0 (P26). */
+    readImpactSet: (fixtureDir: string) => string[];
+    /** The run's answer text (its rendered report) impact recall is scored
+     *  against; `""` when no report was written (P26). */
+    readReportText: (fixtureDir: string, runId: string) => string;
 };
 /** Injectable host surface for {@link runEvalCompare} (mirrors `InspectDeps`). */
 export type CompareDeps = {

package/dist/eval-run.d.ts.map

@@ -1 +1 @@
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package/dist/eval-run.js

@@ -2,8 +2,8 @@ import { spawn } from "node:child_process";
 import { readFileSync } from "node:fs";
 import { dirname, resolve } from "node:path";
 import { evaluateExpectation, readBenchmarkSuite, runFixtureChecks, } from "./bench.js";
-import { compareTrajectories, scoreTrajectory } from "./eval.js";
-import { listRunIds, readManifest as readManifestFs, readStageRecords as readStageRecordsFs, } from "./run-report.js";
+import { compareTrajectories, scoreImpactRecall, scoreTrajectory, } from "./eval.js";
+import { listRunIds, readManifest as readManifestFs, readRunReport, readStageRecords as readStageRecordsFs, } from "./run-report.js";
 const defaultInvoke = async (inv) => {
     const argv = inv.bin === "otto-afk"
         ? [inv.task.inputs, String(inv.iterations), ...inv.args]
@@ -29,6 +29,18 @@ const defaultDeps = {
     readManifest: readManifestFs,
     readStageRecords: readStageRecordsFs,
     runChecks: runFixtureChecks,
+    readImpactSet: (fixtureDir) => {
+        try {
+            const parsed = JSON.parse(readFileSync(resolve(fixtureDir, "impact.json"), "utf8"));
+            return Array.isArray(parsed)
+                ? parsed.filter((f) => typeof f === "string")
+                : [];
+        }
+        catch {
+            return [];
+        }
+    },
+    readReportText: (fixtureDir, runId) => readRunReport(fixtureDir, runId) ?? "",
 };
 const USAGE = "Usage: otto-eval <suite.json> [<configs.json>] [--iterations <n>]\n" +
     "       otto-eval compare <run-a> <run-b>";
@@ -103,11 +115,13 @@ export function parseEvalConfigs(raw) {
             throw new Error(`eval config [${i}]: 'label' must be a non-empty string`);
         }
         const args = rec.args;
-        if (args !== undefined && (!Array.isArray(args) || args.some((a) => typeof a !== "string"))) {
+        if (args !== undefined &&
+            (!Array.isArray(args) || args.some((a) => typeof a !== "string"))) {
             throw new Error(`eval config '${rec.label}': 'args' must be an array of strings`);
         }
         const env = rec.env;
-        if (env !== undefined && (env == null || typeof env !== "object" || Array.isArray(env))) {
+        if (env !== undefined &&
+            (env == null || typeof env !== "object" || Array.isArray(env))) {
             throw new Error(`eval config '${rec.label}': 'env' must be an object`);
         }
         return {
@@ -203,7 +217,15 @@ export async function runEval(argv, deps = defaultDeps) {
                 verdictLines.push(`  - ${config.label}: FAIL (no evidence bundle for run '${runId}')`);
                 continue;
             }
-            const signals = scoreTrajectory(manifest, deps.readStageRecords(fixtureDir, runId));
+            // Impact recall only applies to fixtures that declare a known
+            // impacted-file set; otherwise it stays 0 (scoreImpactRecall is
+            // vacuously 1 for an empty set, which would wrongly inflate it).
+            const impactSet = deps.readImpactSet(fixtureDir);
+            const signals = scoreTrajectory(manifest, deps.readStageRecords(fixtureDir, runId), impactSet.length > 0
+                ? {
+                    impactRecall: scoreImpactRecall(impactSet, deps.readReportText(fixtureDir, runId)),
+                }
+                : {});
             const checks = deps.runChecks(task.expect.checks ?? [], fixtureDir);
             const verdict = evaluateExpectation(task.expect, signals, checks);
             if (!verdict.passed)

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package/dist/eval.d.ts

@@ -47,6 +47,29 @@ export type EvalSignals = {
      * trajectory), so this function stays pure.
      */
     reportLegibilityRatio: number | null;
+    /**
+     * Count of external tool invocations recorded across the manifest and stage
+     * records (P26 codebase-memory spike). `0` when no tools were used.
+     */
+    toolCallCount: number;
+    /**
+     * Sum of `tokensAvoided` reported by tool invocations (P26) — tokens that
+     * would have been spent inlining context the tool retrieved instead. `0`
+     * when no tool reported an estimate.
+     */
+    tokensAvoided: number;
+    /**
+     * Fraction (0..1) of the benchmark's known-impacted files that the run's
+     * answer text surfaced, scored by {@link scoreImpactRecall} against a
+     * fixture's `impact.json` (P26). `0` when not scored from the trajectory
+     * alone — callers score this against a fixture's known-impact list.
+     */
+    impactRecall: number;
+    /**
+     * Milliseconds spent building/refreshing the codebase-memory index for this
+     * run (P26), summed from `manifest.codebaseMemory`. `0` for non-CBM runs.
+     */
+    indexingOverheadMs: number;
 };
 /**
  * Derive {@link EvalSignals} from a recorded run trajectory. Pure: no I/O, no
@@ -57,7 +80,19 @@ export type EvalSignals = {
 export declare function scoreTrajectory(manifest: RunManifest, stages: StageRecord[], opts?: {
     planScore?: PlanRubricScore;
     reportScore?: ReportRubricScore;
+    /** Precomputed impact recall for fixtures that declare a known impacted-file
+     *  set (P26). The trajectory alone can't derive it — the eval harness scores
+     *  it via {@link scoreImpactRecall} against the fixture's impact list and the
+     *  run's answer text, then threads it in here. Absent ⇒ 0 (not applicable). */
+    impactRecall?: number;
 }): EvalSignals;
+/**
+ * Score how many `knownImpactedFiles` a run's answer text surfaced — a thin
+ * wrapper over {@link assessFactSurvival} treating each impacted file path as
+ * a "fact" that must survive into the answer (P26 codebase-memory spike).
+ * Vacuously `1` for an empty impact list. Pure.
+ */
+export declare function scoreImpactRecall(knownImpactedFiles: string[], answerText: string): number;
 /** One Otto run's signals tagged with the configuration label that produced it. */
 export type LabelledSignals = {
     label: string;

package/dist/eval.d.ts.map

@@ -1 +1 @@
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package/dist/eval.js

@@ -1,4 +1,5 @@
 import { tokenUsageTotal } from "./tokens.js";
+import { assessFactSurvival } from "./compression-survival.js";
 const SUCCESS_REASONS = new Set(["complete", "done"]);
 /**
  * Derive {@link EvalSignals} from a recorded run trajectory. Pure: no I/O, no
@@ -23,8 +24,28 @@ export function scoreTrajectory(manifest, stages, opts = {}) {
             stages.reduce((n, s) => n + (s.skillsUsed?.length ?? 0), 0),
         planQualityRatio: opts.planScore ? opts.planScore.ratio : null,
         reportLegibilityRatio: opts.reportScore ? opts.reportScore.ratio : null,
+        toolCallCount: (manifest.toolsUsed?.length ?? 0) +
+            stages.reduce((n, s) => n + (s.toolsUsed?.length ?? 0), 0),
+        tokensAvoided: (manifest.toolsUsed?.reduce((n, t) => n + (t.tokensAvoided ?? 0), 0) ??
+            0) +
+            stages.reduce((n, s) => n +
+                (s.toolsUsed?.reduce((m, t) => m + (t.tokensAvoided ?? 0), 0) ?? 0), 0),
+        impactRecall: opts.impactRecall ?? 0,
+        indexingOverheadMs: (manifest.codebaseMemory?.buildMs ?? 0) +
+            (manifest.codebaseMemory?.refreshMs ?? 0),
     };
 }
+/**
+ * Score how many `knownImpactedFiles` a run's answer text surfaced — a thin
+ * wrapper over {@link assessFactSurvival} treating each impacted file path as
+ * a "fact" that must survive into the answer (P26 codebase-memory spike).
+ * Vacuously `1` for an empty impact list. Pure.
+ */
+export function scoreImpactRecall(knownImpactedFiles, answerText) {
+    if (knownImpactedFiles.length === 0)
+        return 1;
+    return assessFactSurvival(knownImpactedFiles, answerText).survivalRate;
+}
 function elapsedMs(startedAt, finishedAt) {
     if (finishedAt == null)
         return null;
@@ -43,7 +64,7 @@ const COMPARE_COLUMNS = [
     { header: "Exit", cell: (s) => s.exitReason ?? "—" },
     {
         header: "Iterations",
-        cell: (s) => (s.completedIterations == null ? "—" : String(s.completedIterations)),
+        cell: (s) => s.completedIterations == null ? "—" : String(s.completedIterations),
     },
     { header: "Stages", cell: (s) => String(s.stageCount) },
     {
@@ -87,6 +108,26 @@ const COMPARE_COLUMNS = [
             : `${Math.round(s.reportLegibilityRatio * 100)}%`,
         rank: { value: (s) => s.reportLegibilityRatio, better: "higher" },
     },
+    {
+        header: "Tool calls",
+        cell: (s) => String(s.toolCallCount),
+        rank: { value: (s) => s.toolCallCount, better: "lower" },
+    },
+    {
+        header: "Tokens avoided",
+        cell: (s) => String(s.tokensAvoided),
+        rank: { value: (s) => s.tokensAvoided, better: "higher" },
+    },
+    {
+        header: "Impact recall",
+        cell: (s) => `${Math.round(s.impactRecall * 100)}%`,
+        rank: { value: (s) => s.impactRecall, better: "higher" },
+    },
+    {
+        header: "Indexing overhead (ms)",
+        cell: (s) => String(s.indexingOverheadMs),
+        rank: { value: (s) => s.indexingOverheadMs, better: "lower" },
+    },
 ];
 /**
  * Render a stable markdown comparison table across labelled runs — one row per