@phamvuhoang/otto-core 0.33.0 → 0.33.1

package/dist/codebase-memory-adapter.d.ts

@@ -0,0 +1,99 @@
+import type { ToolDefinition } from "./tools.js";
+/**
+ * Codebase Memory adapter (P26 spike, Task 2). Otto owns a local MCP stdio
+ * child (`codebase-memory`) that builds and queries a code-knowledge graph
+ * for the target repo — architecture summaries, call-path tracing, symbol
+ * search — without any runtime network access. The adapter follows the same
+ * house pattern as {@link ./headroom-adapter.js}: a {@link ToolDefinition}
+ * factory for the `.otto/tools/` registry (`otto-tools list/why/health`,
+ * policy authorization) plus an injectable transport ({@link CbmRunner}) so
+ * unit tests never spawn a real process.
+ *
+ * The tool is opt-in and inert until a repo registers + enables it:
+ * `stages: []` (no default injection into any stage template), `enabled:
+ * false` (registry-level off switch), `networkDomains: []` (no runtime
+ * network — the graph lives entirely in a local cache), and `writeRoots:
+ * [".codebase-memory"]` (writes confined to its own cache directory).
+ */
+/** One JSON-RPC request to the codebase-memory MCP child. */
+export type CbmRequest = {
+    operation: string;
+    params: Record<string, unknown>;
+};
+/** The structured response from a {@link CbmRunner} call. */
+export type CbmResponse = {
+    ok: boolean;
+    result?: unknown;
+    error?: string;
+};
+/**
+ * The injectable transport the adapter drives. The real implementation
+ * ({@link createStdioCbmRunner}) spawns the MCP child over stdio; unit tests
+ * inject a stub — this contract is the seam.
+ */
+export type CbmRunner = {
+    available(): boolean;
+    call(req: CbmRequest): CbmResponse;
+};
+/**
+ * The {@link ToolDefinition} a repo drops into `.otto/tools/codebase-memory.json`
+ * (mirrors {@link ./headroom-adapter.js}'s `headroomToolDefinition`). Declares
+ * no runtime network, cache-only writes, and the operation allowlist
+ * (`operations`) that a caller can gate calls against. `stages: []` and
+ * `enabled: false` keep it fully opt-in — a bare repo behaves as before.
+ */
+export declare function codebaseMemoryToolDefinition(command?: string): ToolDefinition;
+/**
+ * Real transport: a minimal newline-delimited JSON-RPC client over stdio.
+ * Sends an `initialize` handshake followed by one `tools/call`, both
+ * newline-framed, and reads the child's stdout for the matching response.
+ * Synchronous (`spawnSync`) to fit the same render/`@spill`-boundary
+ * constraints as the Headroom runners. Only exercised under the gated e2e —
+ * unit tests inject a {@link CbmRunner} stub instead.
+ */
+export declare function createStdioCbmRunner(command: string, cwd: string, timeoutMs: number): CbmRunner;
+/**
+ * Identity stamp a persisted `.codebase-memory/` index carries, so a later
+ * run can tell whether it's safe to trust without re-indexing: which
+ * workspace it was built for, the source revision it was built at, whether
+ * the worktree was dirty at build time, and tool/index bookkeeping.
+ */
+export type CbmIndexIdentity = {
+    workspace: string;
+    sourceRevision: string;
+    worktreeDirty: boolean;
+    toolVersion: string;
+    indexStatus: string;
+    indexedAt: string;
+};
+/**
+ * Freshness verdict for a persisted index against the current workspace
+ * state: `absent` (no index or no current state to compare), `wrong-project`
+ * (index was built for a different workspace), `stale` (revision drift or a
+ * dirty worktree since indexing), `fresh` (safe to trust as-is).
+ */
+export type IndexFreshness = "fresh" | "stale" | "absent" | "wrong-project";
+/**
+ * Classifies a persisted index's freshness against the current workspace
+ * identity. Pure — no filesystem or process access; callers gather
+ * `current`/`index` themselves.
+ */
+export declare function classifyIndexFreshness(current: {
+    workspace: string;
+    sourceRevision: string;
+    worktreeDirty: boolean;
+} | null, index: CbmIndexIdentity | null): IndexFreshness;
+/**
+ * New files written during a run (`after \ before`) plus which of those
+ * escaped the tool's declared write roots — i.e. wrote outside
+ * `.codebase-memory/` (see `writeRoots` on {@link codebaseMemoryToolDefinition}).
+ * A declared root matches itself exactly or any path under `root + "/"`, so
+ * a root doesn't accidentally prefix-match a sibling like `.codebase-memory-foo`.
+ */
+export type WriteInventory = {
+    files: string[];
+    escaped: string[];
+};
+/** Pure diff of two file-path snapshots against a set of declared write roots. */
+export declare function diffWriteInventory(before: string[], after: string[], declaredRoots: string[]): WriteInventory;
+//# sourceMappingURL=codebase-memory-adapter.d.ts.map

package/dist/codebase-memory-adapter.d.ts.map

@@ -0,0 +1 @@
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package/dist/codebase-memory-adapter.js

@@ -0,0 +1,127 @@
+import { spawnSync } from "node:child_process";
+/** Read-only operations the codebase-memory server exposes. */
+const READ_OPS = [
+    "index_status",
+    "get_graph_schema",
+    "get_architecture",
+    "search_graph",
+    "trace_path",
+    "detect_changes",
+    "search_code",
+    "get_code_snippet",
+];
+/** The full operation allowlist: one write op + the read-only surface. */
+const OPERATIONS = [
+    { name: "index_repository", write: true },
+    ...READ_OPS.map((name) => ({ name, write: false })),
+];
+/**
+ * The {@link ToolDefinition} a repo drops into `.otto/tools/codebase-memory.json`
+ * (mirrors {@link ./headroom-adapter.js}'s `headroomToolDefinition`). Declares
+ * no runtime network, cache-only writes, and the operation allowlist
+ * (`operations`) that a caller can gate calls against. `stages: []` and
+ * `enabled: false` keep it fully opt-in — a bare repo behaves as before.
+ */
+export function codebaseMemoryToolDefinition(command = "codebase-memory") {
+    return {
+        name: "codebase-memory",
+        kind: "mcp",
+        description: "Local code-knowledge graph via an Otto-owned MCP stdio child.",
+        capabilities: [
+            "architecture",
+            "call-path",
+            "change-impact",
+            "symbol-search",
+        ],
+        stages: [], // opt-in via config; no default injection
+        command,
+        env: [],
+        networkDomains: [], // no runtime network
+        writeRoots: [".codebase-memory"], // cache-only
+        secretRefs: [],
+        timeoutMs: 120_000,
+        healthCheck: `${command} --version`,
+        approvalActions: [],
+        enabled: false,
+        operations: OPERATIONS,
+    };
+}
+/**
+ * Real transport: a minimal newline-delimited JSON-RPC client over stdio.
+ * Sends an `initialize` handshake followed by one `tools/call`, both
+ * newline-framed, and reads the child's stdout for the matching response.
+ * Synchronous (`spawnSync`) to fit the same render/`@spill`-boundary
+ * constraints as the Headroom runners. Only exercised under the gated e2e —
+ * unit tests inject a {@link CbmRunner} stub instead.
+ */
+export function createStdioCbmRunner(command, cwd, timeoutMs) {
+    const [bin, ...args] = command.split(" ");
+    const available = () => {
+        const probe = spawnSync(bin, ["--version"], { cwd, timeout: 5000 });
+        return probe.status === 0;
+    };
+    // One-shot request/response: initialize handshake + tools/call, newline-framed.
+    const call = (req) => {
+        const init = JSON.stringify({
+            jsonrpc: "2.0",
+            id: 1,
+            method: "initialize",
+            params: {},
+        });
+        const callMsg = JSON.stringify({
+            jsonrpc: "2.0",
+            id: 2,
+            method: "tools/call",
+            params: { name: req.operation, arguments: req.params },
+        });
+        const proc = spawnSync(bin, args, {
+            cwd,
+            timeout: timeoutMs,
+            input: `${init}\n${callMsg}\n`,
+        });
+        if (proc.status !== 0)
+            return { ok: false, error: proc.stderr?.toString() || "child failed" };
+        const lines = proc.stdout.toString().split("\n").filter(Boolean);
+        for (const line of lines) {
+            try {
+                const msg = JSON.parse(line);
+                if (msg.id === 2 && "result" in msg)
+                    return { ok: true, result: msg.result };
+                if (msg.id === 2 && "error" in msg)
+                    return { ok: false, error: String(msg.error.message ?? msg.error) };
+            }
+            catch {
+                /* ignore non-JSON banner lines */
+            }
+        }
+        return { ok: false, error: "no response for tools/call" };
+    };
+    return { available, call };
+}
+/**
+ * Classifies a persisted index's freshness against the current workspace
+ * identity. Pure — no filesystem or process access; callers gather
+ * `current`/`index` themselves.
+ */
+export function classifyIndexFreshness(current, index) {
+    if (!index || !current)
+        return "absent";
+    if (index.workspace !== current.workspace)
+        return "wrong-project";
+    if (index.sourceRevision !== current.sourceRevision || current.worktreeDirty)
+        return "stale";
+    return "fresh";
+}
+/** Pure diff of two file-path snapshots against a set of declared write roots. */
+export function diffWriteInventory(before, after, declaredRoots) {
+    const beforeSet = new Set(before);
+    const files = after.filter((f) => !beforeSet.has(f));
+    const under = (f) => declaredRoots.some((raw) => {
+        // Normalize a trailing slash so a root declared as `.codebase-memory/`
+        // classifies the bare directory the same as `.codebase-memory` does.
+        const r = raw.replace(/\/+$/, "");
+        return f === r || f.startsWith(`${r}/`);
+    });
+    return { files, escaped: files.filter((f) => !under(f)) };
+}
+//# sourceMappingURL=codebase-memory-adapter.js.map

package/dist/codebase-memory-adapter.js.map

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package/dist/context-compressor.d.ts

@@ -173,6 +173,17 @@ export declare function summarizeToolCompression(usages: ToolUsage[]): {
     tokensSaved: number;
     retrievals: number;
 };
+/**
+ * Summarize the codebase-memory retrieval {@link ToolUsage} records on a run's
+ * stage records (name `codebase-memory`) — what a context report reads to show
+ * graph-retrieval evidence (P26). Pure. `undefined` when no such usage is
+ * present, so a non-CBM run's report omits the section entirely.
+ */
+export declare function summarizeGraphRetrieval(usages: ToolUsage[]): {
+    queries: number;
+    tokensAvoided: number;
+    fallbacks: number;
+} | undefined;
 /** One-line human summary of compression savings for the context report. Pure. */
 export declare function formatCompressionSummary(s: CompressionSummary): string;
 //# sourceMappingURL=context-compressor.d.ts.map

package/dist/context-compressor.d.ts.map

@@ -1 +1 @@
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package/dist/context-compressor.js

@@ -259,6 +259,22 @@ export function summarizeToolCompression(usages) {
     }
     return { invocations, tokensSaved, retrievals };
 }
+/**
+ * Summarize the codebase-memory retrieval {@link ToolUsage} records on a run's
+ * stage records (name `codebase-memory`) — what a context report reads to show
+ * graph-retrieval evidence (P26). Pure. `undefined` when no such usage is
+ * present, so a non-CBM run's report omits the section entirely.
+ */
+export function summarizeGraphRetrieval(usages) {
+    const graph = usages.filter((u) => u.name === "codebase-memory");
+    if (graph.length === 0)
+        return undefined;
+    return {
+        queries: graph.length,
+        tokensAvoided: graph.reduce((s, u) => s + (u.tokensAvoided ?? 0), 0),
+        fallbacks: graph.filter((u) => u.fallbackReason).length,
+    };
+}
 /** One-line human summary of compression savings for the context report. Pure. */
 export function formatCompressionSummary(s) {
     if (s.invocations === 0)

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+{"version":3,"file":"context-compressor.js","sourceRoot":"","sources":["../src/context-compressor.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,YAAY,EAAE,aAAa,EAAE,MAAM,SAAS,CAAC;AACjE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,2BAA2B,CAAC;AAC/E,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAC;AAkC/C,MAAM,KAAK,GAAwB,IAAI,GAAG,CAAC,CAAC,KAAK,EAAE,UAAU,CAAC,CAAC,CAAC;AAEhE;;;GAGG;AACH,MAAM,CAAC,MAAM,sBAAsB,GAAG;IACpC,YAAY;IACZ,aAAa;IACb,iBAAiB;IACjB,eAAe;IACf,mBAAmB;CACX,CAAC;AAGX;;;;;;;GAOG;AACH,MAAM,UAAU,sBAAsB,CAAC,QAA6B;IAClE,OAAO,QAAQ,KAAK,YAAY,CAAC;AACnC,CAAC;AA+DD;;;;GAIG;AACH,MAAM,UAAU,qBAAqB,CAAC,IAIrC;IACC,KAAK,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC;QACrD,IAAI,OAAO,GAAG,KAAK,QAAQ,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC9C,MAAM,CAAC,GAAG,GAAG,CAAC,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;YACnC,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAE,CAAoB,CAAC,CAAC,CAAC,KAAK,CAAC;QACtD,CAAC;IACH,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,kBAAkB,CAChC,YAAoB,EACpB,MAAyB,OAAO,CAAC,GAAG,EACpC,IAAa;IAEb,IAAI,MAA0B,CAAC;IAC/B,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CACpB,YAAY,CAAC,IAAI,CAAC,YAAY,EAAE,OAAO,EAAE,aAAa,CAAC,EAAE,MAAM,CAAC,CACtC,CAAC;QAC7B,IAAI,OAAO,GAAG,CAAC,iBAAiB,KAAK,QAAQ;YAC3C,MAAM,GAAG,GAAG,CAAC,iBAAiB,CAAC;IACnC,CAAC;IAAC,MAAM,CAAC;QACP,wDAAwD;IAC1D,CAAC;IACD,OAAO,qBAAqB,CAAC;QAC3B,IAAI;QACJ,GAAG,EAAE,GAAG,CAAC,uBAAuB;QAChC,MAAM;KACP,CAAC,CAAC;AACL,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,iBAAiB,CAC/B,YAAoB,EACpB,KAAa;IAEb,MAAM,MAAM,GAAG,IAAI,CAAC,YAAY,CAAC,YAAY,EAAE,KAAK,CAAC,EAAE,YAAY,CAAC,CAAC;IACrE,OAAO,CAAC,GAAG,EAAE,QAAQ,EAAE,EAAE;QACvB,SAAS,CAAC,MAAM,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QACvC,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAC,mBAAmB,EAAE,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QAChE,aAAa,CAAC,IAAI,CAAC,MAAM,EAAE,GAAG,IAAI,OAAO,CAAC,EAAE,QAAQ,CAAC,CAAC;QACtD,OAAO,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,GAAG,IAAI,OAAO,CAAC,CAAC;IACpE,CAAC,CAAC;AACJ,CAAC;AAKD;;;;;GAKG;AACH,MAAM,cAAc,GAAG,GAAG,CAAC;AAE3B;;;;;;;GAOG;AACH,SAAS,cAAc,CACrB,KAAoB,EACpB,OAAe,EACf,MAAwB,EACxB,KAA4B,EAC5B,SAAiB;IAEjB,MAAM,YAAY,GAAG,cAAc,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IACvD,MAAM,WAAW,GAAG,CAAC,QAAiB,EAAE,IAAa,EAAkB,EAAE,CAAC,CAAC;QACzE,IAAI,EAAE,KAAK,CAAC,IAAI;QAChB,YAAY;QACZ,WAAW,EAAE,YAAY;QACzB,WAAW,EAAE,CAAC;QACd,SAAS;QACT,iBAAiB,EAAE,OAAO;QAC1B,QAAQ;QACR,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;KAC1B,CAAC,CAAC;IAEH,IAAI,MAAM,KAAK,IAAI,EAAE,CAAC;QACpB,OAAO,WAAW,CAChB,IAAI,EACJ,eAAe,OAAO,+BAA+B,CACtD,CAAC;IACJ,CAAC;IACD,MAAM,WAAW,GAAG,cAAc,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IACvD,IAAI,CAAC,MAAM,CAAC,EAAE,IAAI,WAAW,IAAI,YAAY,EAAE,CAAC;QAC9C,OAAO,WAAW,CAChB,CAAC,MAAM,CAAC,EAAE,EACV,MAAM,CAAC,IAAI;YACT,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,oCAAoC,CAAC,CAAC,CAAC,SAAS,CAAC,CACjE,CAAC;IACJ,CAAC;IACD,0EAA0E;IAC1E,uEAAuE;IACvE,oEAAoE;IACpE,IAAI,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACpC,OAAO,WAAW,CAAC,IAAI,EAAE,0CAA0C,CAAC,CAAC;IACvE,CAAC;IACD,MAAM,QAAQ,GAAG,kBAAkB,CAAC,cAAc,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC;IAC7E,IAAI,QAAQ,CAAC,YAAY,GAAG,cAAc,EAAE,CAAC;QAC3C,OAAO,WAAW,CAChB,IAAI,EACJ,wBAAwB,QAAQ,CAAC,QAAQ,IAAI,QAAQ,CAAC,KAAK,WAAW;YACpE,sBAAsB,QAAQ,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,mBAAmB,CACnF,CAAC;IACJ,CAAC;IACD,MAAM,eAAe,GAAG,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IACzE,OAAO;QACL,IAAI,EAAE,MAAM,CAAC,IAAI;QACjB,YAAY;QACZ,WAAW;QACX,WAAW,EAAE,YAAY,GAAG,WAAW;QACvC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QAC/C,SAAS;QACT,iBAAiB,EAAE,OAAO;QAC1B,QAAQ,EAAE,KAAK;QACf,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;KAC9C,CAAC;AACJ,CAAC;AAED;;;;;;;;;;;;GAYG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,UAAoC,EACpC,KAAoB,EACpB,KAA4B,EAC5B,OAA+B,EAAE;IAEjC,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,IAAI,IAAI,CAAC,GAAG,CAAC;IACjC,IAAI,CAAC,UAAU;QACb,OAAO,cAAc,CACnB,KAAK,EACL,KAAK,EACL,EAAE,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,EAC9B,IAAI,EACJ,CAAC,CACF,CAAC;IAEJ,MAAM,KAAK,GAAG,GAAG,EAAE,CAAC;IACpB,IAAI,SAAkB,CAAC;IACvB,IAAI,CAAC;QACH,SAAS,GAAG,MAAM,UAAU,CAAC,WAAW,EAAE,CAAC;IAC7C,CAAC;IAAC,MAAM,CAAC;QACP,SAAS,GAAG,KAAK,CAAC;IACpB,CAAC;IACD,IAAI,CAAC,SAAS;QAAE,OAAO,cAAc,CAAC,KAAK,EAAE,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC;IAE9E,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;QAChD,OAAO,cAAc,CACnB,KAAK,EACL,UAAU,CAAC,OAAO,EAClB,MAAM,EACN,KAAK,EACL,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,EAAE,GAAG,KAAK,CAAC,CAC3B,CAAC;IACJ,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,OAAO,cAAc,CACnB,KAAK,EACL,UAAU,CAAC,OAAO,EAClB;YACE,EAAE,EAAE,KAAK;YACT,IAAI,EAAE,KAAK,CAAC,IAAI;YAChB,IAAI,EAAE,qBAAsB,CAAW,CAAC,OAAO,IAAI,CAAC,EAAE;SACvD,EACD,KAAK,EACL,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,EAAE,GAAG,KAAK,CAAC,CAC3B,CAAC;IACJ,CAAC;AACH,CAA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package/dist/eval.d.ts

@@ -47,6 +47,29 @@ export type EvalSignals = {
      * trajectory), so this function stays pure.
      */
     reportLegibilityRatio: number | null;
+    /**
+     * Count of external tool invocations recorded across the manifest and stage
+     * records (P26 codebase-memory spike). `0` when no tools were used.
+     */
+    toolCallCount: number;
+    /**
+     * Sum of `tokensAvoided` reported by tool invocations (P26) — tokens that
+     * would have been spent inlining context the tool retrieved instead. `0`
+     * when no tool reported an estimate.
+     */
+    tokensAvoided: number;
+    /**
+     * Fraction (0..1) of the benchmark's known-impacted files that the run's
+     * answer text surfaced, scored by {@link scoreImpactRecall} against a
+     * fixture's `impact.json` (P26). `0` when not scored from the trajectory
+     * alone — callers score this against a fixture's known-impact list.
+     */
+    impactRecall: number;
+    /**
+     * Milliseconds spent building/refreshing the codebase-memory index for this
+     * run (P26), summed from `manifest.codebaseMemory`. `0` for non-CBM runs.
+     */
+    indexingOverheadMs: number;
 };
 /**
  * Derive {@link EvalSignals} from a recorded run trajectory. Pure: no I/O, no
@@ -58,6 +81,13 @@ export declare function scoreTrajectory(manifest: RunManifest, stages: StageReco
     planScore?: PlanRubricScore;
     reportScore?: ReportRubricScore;
 }): EvalSignals;
+/**
+ * Score how many `knownImpactedFiles` a run's answer text surfaced — a thin
+ * wrapper over {@link assessFactSurvival} treating each impacted file path as
+ * a "fact" that must survive into the answer (P26 codebase-memory spike).
+ * Vacuously `1` for an empty impact list. Pure.
+ */
+export declare function scoreImpactRecall(knownImpactedFiles: string[], answerText: string): number;
 /** One Otto run's signals tagged with the configuration label that produced it. */
 export type LabelledSignals = {
     label: string;

package/dist/eval.d.ts.map

@@ -1 +1 @@
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package/dist/eval.js

@@ -1,4 +1,5 @@
 import { tokenUsageTotal } from "./tokens.js";
+import { assessFactSurvival } from "./compression-survival.js";
 const SUCCESS_REASONS = new Set(["complete", "done"]);
 /**
  * Derive {@link EvalSignals} from a recorded run trajectory. Pure: no I/O, no
@@ -23,8 +24,28 @@ export function scoreTrajectory(manifest, stages, opts = {}) {
             stages.reduce((n, s) => n + (s.skillsUsed?.length ?? 0), 0),
         planQualityRatio: opts.planScore ? opts.planScore.ratio : null,
         reportLegibilityRatio: opts.reportScore ? opts.reportScore.ratio : null,
+        toolCallCount: (manifest.toolsUsed?.length ?? 0) +
+            stages.reduce((n, s) => n + (s.toolsUsed?.length ?? 0), 0),
+        tokensAvoided: (manifest.toolsUsed?.reduce((n, t) => n + (t.tokensAvoided ?? 0), 0) ??
+            0) +
+            stages.reduce((n, s) => n +
+                (s.toolsUsed?.reduce((m, t) => m + (t.tokensAvoided ?? 0), 0) ?? 0), 0),
+        impactRecall: 0,
+        indexingOverheadMs: (manifest.codebaseMemory?.buildMs ?? 0) +
+            (manifest.codebaseMemory?.refreshMs ?? 0),
     };
 }
+/**
+ * Score how many `knownImpactedFiles` a run's answer text surfaced — a thin
+ * wrapper over {@link assessFactSurvival} treating each impacted file path as
+ * a "fact" that must survive into the answer (P26 codebase-memory spike).
+ * Vacuously `1` for an empty impact list. Pure.
+ */
+export function scoreImpactRecall(knownImpactedFiles, answerText) {
+    if (knownImpactedFiles.length === 0)
+        return 1;
+    return assessFactSurvival(knownImpactedFiles, answerText).survivalRate;
+}
 function elapsedMs(startedAt, finishedAt) {
     if (finishedAt == null)
         return null;
@@ -43,7 +64,7 @@ const COMPARE_COLUMNS = [
     { header: "Exit", cell: (s) => s.exitReason ?? "—" },
     {
         header: "Iterations",
-        cell: (s) => (s.completedIterations == null ? "—" : String(s.completedIterations)),
+        cell: (s) => s.completedIterations == null ? "—" : String(s.completedIterations),
     },
     { header: "Stages", cell: (s) => String(s.stageCount) },
     {
@@ -87,6 +108,26 @@ const COMPARE_COLUMNS = [
             : `${Math.round(s.reportLegibilityRatio * 100)}%`,
         rank: { value: (s) => s.reportLegibilityRatio, better: "higher" },
     },
+    {
+        header: "Tool calls",
+        cell: (s) => String(s.toolCallCount),
+        rank: { value: (s) => s.toolCallCount, better: "lower" },
+    },
+    {
+        header: "Tokens avoided",
+        cell: (s) => String(s.tokensAvoided),
+        rank: { value: (s) => s.tokensAvoided, better: "higher" },
+    },
+    {
+        header: "Impact recall",
+        cell: (s) => `${Math.round(s.impactRecall * 100)}%`,
+        rank: { value: (s) => s.impactRecall, better: "higher" },
+    },
+    {
+        header: "Indexing overhead (ms)",
+        cell: (s) => String(s.indexingOverheadMs),
+        rank: { value: (s) => s.indexingOverheadMs, better: "lower" },
+    },
 ];
 /**
  * Render a stable markdown comparison table across labelled runs — one row per

package/dist/eval.js.map

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package/dist/extension-profiles.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"extension-profiles.d.ts","sourceRoot":"","sources":["../src/extension-profiles.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAC;AAEhE,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AACvD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAEjD;;;;;;;;;;;;;GAaG;AAEH,0DAA0D;AAC1D,MAAM,MAAM,gBAAgB,GAAG;IAC7B,mDAAmD;IACnD,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,kEAAkE;IAClE,OAAO,EAAE,mBAAmB,EAAE,CAAC;IAC/B,mDAAmD;IACnD,KAAK,EAAE,cAAc,EAAE,CAAC;IACxB,sDAAsD;IACtD,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAChC,uEAAuE;IACvE,MAAM,CAAC,EAAE,OAAO,CAAC,YAAY,CAAC,CAAC;IAC/B,iFAAiF;IACjF,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,2EAA2E;IAC3E,QAAQ,EAAE,MAAM,CAAC;CAClB,CAAC;AAoFF,kDAAkD;AAClD,wBAAgB,YAAY,IAAI,gBAAgB,EAAE,CAEjD;AAED,+DAA+D;AAC/D,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,gBAAgB,GAAG,IAAI,CAEhE;AAED,4EAA4E;AAC5E,eAAO,MAAM,kBAAkB,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,gBAAgB,CAAC,CACL,CAAC"}
+{"version":3,"file":"extension-profiles.d.ts","sourceRoot":"","sources":["../src/extension-profiles.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAC;AAEhE,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AACvD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAEjD;;;;;;;;;;;;;GAaG;AAEH,0DAA0D;AAC1D,MAAM,MAAM,gBAAgB,GAAG;IAC7B,mDAAmD;IACnD,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,kEAAkE;IAClE,OAAO,EAAE,mBAAmB,EAAE,CAAC;IAC/B,mDAAmD;IACnD,KAAK,EAAE,cAAc,EAAE,CAAC;IACxB,sDAAsD;IACtD,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAChC,uEAAuE;IACvE,MAAM,CAAC,EAAE,OAAO,CAAC,YAAY,CAAC,CAAC;IAC/B,iFAAiF;IACjF,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,2EAA2E;IAC3E,QAAQ,EAAE,MAAM,CAAC;CAClB,CAAC;AA+FF,kDAAkD;AAClD,wBAAgB,YAAY,IAAI,gBAAgB,EAAE,CAEjD;AAED,+DAA+D;AAC/D,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,gBAAgB,GAAG,IAAI,CAEhE;AAED,4EAA4E;AAC5E,eAAO,MAAM,kBAAkB,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,gBAAgB,CAAC,CACL,CAAC"}

package/dist/extension-profiles.js

@@ -1,3 +1,4 @@
+import { codebaseMemoryToolDefinition } from "./codebase-memory-adapter.js";
 import { headroomToolDefinition } from "./headroom-adapter.js";
 /**
  * Pinned upstream refs for the external sources. Tags, never branches, so a
@@ -70,6 +71,16 @@ const PROFILES = [
         requires: [],
         followUp: "Next: pair with otto-afk --review-panel; review .otto/policy.json and tighten further as needed.",
     },
+    {
+        name: "codebase-intelligence",
+        description: "Local code-knowledge graph (Codebase Memory) via an Otto-owned MCP stdio child. Off by default; no live prompt injection in the spike.",
+        sources: [],
+        tools: [codebaseMemoryToolDefinition()],
+        config: { tools: { "codebase-memory": { enabled: true, stages: [] } } },
+        policy: { allowedWriteRoots: [".codebase-memory"] },
+        requires: ["codebase-memory"],
+        followUp: "Next: otto-tools health && otto-tools why plan",
+    },
 ];
 /** All curated profiles, sorted by name. Pure. */
 export function listProfiles() {

package/dist/extension-profiles.js.map

@@ -1 +1 @@
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package/dist/fanout.d.ts

@@ -8,20 +8,49 @@
  * sequential loop — fan-out never leaves the tree conflicted or half-merged.
  */
 import type { AgentRuntimeId } from "./agent-runtime.js";
+import type { CbmIndexIdentity } from "./codebase-memory-adapter.js";
+import type { RetrievalStore } from "./context-compressor.js";
+import { type SubAgentHandoff } from "./handoff.js";
 import type { TierLadder } from "./model-tier.js";
-import { type PlanTask } from "./plan-tasks.js";
+import { type ConflictPrediction, type PlanTask } from "./plan-tasks.js";
 import type { StageResult } from "./runner.js";
 export type FanoutTaskStatus = "landed" | "deferred";
 export type FanoutTaskOutcome = {
     task: PlanTask;
     status: FanoutTaskStatus;
     reason?: string;
+    /** The sub-agent's structured handoff, when one could be read (or derived). */
+    handoff?: SubAgentHandoff;
 };
 export type FanoutResult = {
     outcomes: FanoutTaskOutcome[];
     /** Tasks that did not land cleanly and must be re-run sequentially. */
     deferred: PlanTask[];
+    /** Cross-task interaction notes (shared files, out-of-scope touches,
+     *  deferrals) surfaced by the synthesizer; `""` when nothing noteworthy. */
+    crossTaskSummary: string;
 };
+/**
+ * Reorder `tasks` by ascending conflict risk (safest first): highest scope
+ * confidence, fewest predicted overlaps. Pure — the caller decides how to use
+ * the order (P25 Task 3: Phase B merges the lowest-risk worktrees first).
+ */
+export declare function orderByConflictRisk(tasks: PlanTask[], predictions: ConflictPrediction[]): PlanTask[];
+/**
+ * Summarize cross-task interactions worth a human's attention: out-of-scope
+ * touches reported by a sub-agent's handoff, and deferrals with their reason.
+ * `""` when no outcome has anything noteworthy to report.
+ */
+export declare function buildCrossTaskSummary(outcomes: FanoutTaskOutcome[]): string;
+/**
+ * Per-worktree retrieval identity (P25 Task 7, the seam for P26): stamps a
+ * fan-out worktree with the workspace it lives in and the sha it was built
+ * from, so a codebase-memory index built inside one worktree is never
+ * mistaken for another's (or trusted once the worktree's HEAD has moved on).
+ * Pure. Only computed when `bindWorktreeIdentity` is on; otherwise unused —
+ * P26 is the only consumer.
+ */
+export declare function worktreeIndexIdentity(dir: string, before: string): Pick<CbmIndexIdentity, "workspace" | "sourceRevision" | "worktreeDirty">;
 export type RunFanoutOptions = {
     tasks: PlanTask[];
     workspaceDir: string;
@@ -34,6 +63,14 @@ export type RunFanoutOptions = {
     routing: boolean;
     runtimeId: AgentRuntimeId;
     signal?: AbortSignal;
+    /**
+     * Real paths named in the plan doc (spec.md + plan.md), from
+     * {@link extractPlanFileMap}. Threaded into Phase B's conflict prediction so
+     * `scopeConfidence` varies per task and merge order is non-inert (P25 Task
+     * 3). Optional; `[]` (fan-out without `--plan`) reproduces prior uniform-
+     * confidence ordering.
+     */
+    planFileMap?: string[];
     /**
      * The parallel per-task work: implement `task` inside `worktreeDir` and commit
      * there. Injectable so tests don't spawn a model; defaults to the
@@ -44,6 +81,16 @@ export type RunFanoutOptions = {
      *  tokens into the run total (budget/pacing). Not called for an injected
      *  `runSubAgent`. */
     onSubAgent?: (sr: StageResult) => void;
+    /** The run's retrieval store (issue #112 P20's `runRetrievalStore`), passed
+     *  through to each sub-agent's `executeStage` call exactly as the
+     *  sequential loop already does. Optional; absent ⇒ no retrieval store is
+     *  threaded (today's behavior — fan-out never passed one). */
+    retrievalStore?: RetrievalStore;
+    /** P25/P26 seam: when true, stamp each built worktree with a
+     *  {@link worktreeIndexIdentity} so a codebase-memory index built inside
+     *  one worktree can't be mistaken for another's. Default false ⇒ inert;
+     *  only meaningful once the `codebase-memory` tool is enabled. */
+    bindWorktreeIdentity?: boolean;
 };
 /**
  * Run the plan's tasks wave-by-wave. Phase A (parallel, bounded by

package/dist/fanout.d.ts.map

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