@pfmcodes/caret 0.1.2 → 0.1.4

package/highlight.js/lib/languages/stan.js

@@ -1,521 +0,0 @@
-/*
-Language: Stan
-Description: The Stan probabilistic programming language
-Author: Sean Pinkney <sean.pinkney@gmail.com>
-Website: http://mc-stan.org/
-Category: scientific
-*/
-
-function stan(hljs) {
-  const regex = hljs.regex;
-  // variable names cannot conflict with block identifiers
-  const BLOCKS = [
-    'functions',
-    'model',
-    'data',
-    'parameters',
-    'quantities',
-    'transformed',
-    'generated'
-  ];
-
-  const STATEMENTS = [
-    'for',
-    'in',
-    'if',
-    'else',
-    'while',
-    'break',
-    'continue',
-    'return'
-  ];
-
-  const TYPES = [
-    'array',
-    'tuple',
-    'complex',
-    'int',
-    'real',
-    'vector',
-    'complex_vector',
-    'ordered',
-    'positive_ordered',
-    'simplex',
-    'unit_vector',
-    'row_vector',
-    'complex_row_vector',
-    'matrix',
-    'complex_matrix',
-    'cholesky_factor_corr|10',
-    'cholesky_factor_cov|10',
-    'corr_matrix|10',
-    'cov_matrix|10',
-    'void'
-  ];
-
-  // to get the functions list
-  // clone the [stan-docs repo](https://github.com/stan-dev/docs)
-  // then cd into it and run this bash script https://gist.github.com/joshgoebel/dcd33f82d4059a907c986049893843cf
-  //
-  // the output files are
-  // distributions_quoted.txt
-  // functions_quoted.txt
-
-  const FUNCTIONS = [
-    'abs',
-    'acos',
-    'acosh',
-    'add_diag',
-    'algebra_solver',
-    'algebra_solver_newton',
-    'append_array',
-    'append_col',
-    'append_row',
-    'asin',
-    'asinh',
-    'atan',
-    'atan2',
-    'atanh',
-    'bessel_first_kind',
-    'bessel_second_kind',
-    'binary_log_loss',
-    'block',
-    'cbrt',
-    'ceil',
-    'chol2inv',
-    'cholesky_decompose',
-    'choose',
-    'col',
-    'cols',
-    'columns_dot_product',
-    'columns_dot_self',
-    'complex_schur_decompose',
-    'complex_schur_decompose_t',
-    'complex_schur_decompose_u',
-    'conj',
-    'cos',
-    'cosh',
-    'cov_exp_quad',
-    'crossprod',
-    'csr_extract',
-    'csr_extract_u',
-    'csr_extract_v',
-    'csr_extract_w',
-    'csr_matrix_times_vector',
-    'csr_to_dense_matrix',
-    'cumulative_sum',
-    'dae',
-    'dae_tol',
-    'determinant',
-    'diag_matrix',
-    'diagonal',
-    'diag_post_multiply',
-    'diag_pre_multiply',
-    'digamma',
-    'dims',
-    'distance',
-    'dot_product',
-    'dot_self',
-    'eigendecompose',
-    'eigendecompose_sym',
-    'eigenvalues',
-    'eigenvalues_sym',
-    'eigenvectors',
-    'eigenvectors_sym',
-    'erf',
-    'erfc',
-    'exp',
-    'exp2',
-    'expm1',
-    'falling_factorial',
-    'fdim',
-    'fft',
-    'fft2',
-    'floor',
-    'fma',
-    'fmax',
-    'fmin',
-    'fmod',
-    'gamma_p',
-    'gamma_q',
-    'generalized_inverse',
-    'get_imag',
-    'get_real',
-    'head',
-    'hmm_hidden_state_prob',
-    'hmm_marginal',
-    'hypot',
-    'identity_matrix',
-    'inc_beta',
-    'integrate_1d',
-    'integrate_ode',
-    'integrate_ode_adams',
-    'integrate_ode_bdf',
-    'integrate_ode_rk45',
-    'int_step',
-    'inv',
-    'inv_cloglog',
-    'inv_erfc',
-    'inverse',
-    'inverse_spd',
-    'inv_fft',
-    'inv_fft2',
-    'inv_inc_beta',
-    'inv_logit',
-    'inv_Phi',
-    'inv_sqrt',
-    'inv_square',
-    'is_inf',
-    'is_nan',
-    'lambert_w0',
-    'lambert_wm1',
-    'lbeta',
-    'lchoose',
-    'ldexp',
-    'lgamma',
-    'linspaced_array',
-    'linspaced_int_array',
-    'linspaced_row_vector',
-    'linspaced_vector',
-    'lmgamma',
-    'lmultiply',
-    'log',
-    'log1m',
-    'log1m_exp',
-    'log1m_inv_logit',
-    'log1p',
-    'log1p_exp',
-    'log_determinant',
-    'log_diff_exp',
-    'log_falling_factorial',
-    'log_inv_logit',
-    'log_inv_logit_diff',
-    'logit',
-    'log_mix',
-    'log_modified_bessel_first_kind',
-    'log_rising_factorial',
-    'log_softmax',
-    'log_sum_exp',
-    'machine_precision',
-    'map_rect',
-    'matrix_exp',
-    'matrix_exp_multiply',
-    'matrix_power',
-    'max',
-    'mdivide_left_spd',
-    'mdivide_left_tri_low',
-    'mdivide_right_spd',
-    'mdivide_right_tri_low',
-    'mean',
-    'min',
-    'modified_bessel_first_kind',
-    'modified_bessel_second_kind',
-    'multiply_lower_tri_self_transpose',
-    'negative_infinity',
-    'norm',
-    'norm1',
-    'norm2',
-    'not_a_number',
-    'num_elements',
-    'ode_adams',
-    'ode_adams_tol',
-    'ode_adjoint_tol_ctl',
-    'ode_bdf',
-    'ode_bdf_tol',
-    'ode_ckrk',
-    'ode_ckrk_tol',
-    'ode_rk45',
-    'ode_rk45_tol',
-    'one_hot_array',
-    'one_hot_int_array',
-    'one_hot_row_vector',
-    'one_hot_vector',
-    'ones_array',
-    'ones_int_array',
-    'ones_row_vector',
-    'ones_vector',
-    'owens_t',
-    'Phi',
-    'Phi_approx',
-    'polar',
-    'positive_infinity',
-    'pow',
-    'print',
-    'prod',
-    'proj',
-    'qr',
-    'qr_Q',
-    'qr_R',
-    'qr_thin',
-    'qr_thin_Q',
-    'qr_thin_R',
-    'quad_form',
-    'quad_form_diag',
-    'quad_form_sym',
-    'quantile',
-    'rank',
-    'reduce_sum',
-    'reject',
-    'rep_array',
-    'rep_matrix',
-    'rep_row_vector',
-    'rep_vector',
-    'reverse',
-    'rising_factorial',
-    'round',
-    'row',
-    'rows',
-    'rows_dot_product',
-    'rows_dot_self',
-    'scale_matrix_exp_multiply',
-    'sd',
-    'segment',
-    'sin',
-    'singular_values',
-    'sinh',
-    'size',
-    'softmax',
-    'sort_asc',
-    'sort_desc',
-    'sort_indices_asc',
-    'sort_indices_desc',
-    'sqrt',
-    'square',
-    'squared_distance',
-    'step',
-    'sub_col',
-    'sub_row',
-    'sum',
-    'svd',
-    'svd_U',
-    'svd_V',
-    'symmetrize_from_lower_tri',
-    'tail',
-    'tan',
-    'tanh',
-    'target',
-    'tcrossprod',
-    'tgamma',
-    'to_array_1d',
-    'to_array_2d',
-    'to_complex',
-    'to_int',
-    'to_matrix',
-    'to_row_vector',
-    'to_vector',
-    'trace',
-    'trace_gen_quad_form',
-    'trace_quad_form',
-    'trigamma',
-    'trunc',
-    'uniform_simplex',
-    'variance',
-    'zeros_array',
-    'zeros_int_array',
-    'zeros_row_vector'
-  ];
-
-  const DISTRIBUTIONS = [
-    'bernoulli',
-    'bernoulli_logit',
-    'bernoulli_logit_glm',
-    'beta',
-    'beta_binomial',
-    'beta_proportion',
-    'binomial',
-    'binomial_logit',
-    'categorical',
-    'categorical_logit',
-    'categorical_logit_glm',
-    'cauchy',
-    'chi_square',
-    'dirichlet',
-    'discrete_range',
-    'double_exponential',
-    'exp_mod_normal',
-    'exponential',
-    'frechet',
-    'gamma',
-    'gaussian_dlm_obs',
-    'gumbel',
-    'hmm_latent',
-    'hypergeometric',
-    'inv_chi_square',
-    'inv_gamma',
-    'inv_wishart',
-    'inv_wishart_cholesky',
-    'lkj_corr',
-    'lkj_corr_cholesky',
-    'logistic',
-    'loglogistic',
-    'lognormal',
-    'multi_gp',
-    'multi_gp_cholesky',
-    'multinomial',
-    'multinomial_logit',
-    'multi_normal',
-    'multi_normal_cholesky',
-    'multi_normal_prec',
-    'multi_student_cholesky_t',
-    'multi_student_t',
-    'multi_student_t_cholesky',
-    'neg_binomial',
-    'neg_binomial_2',
-    'neg_binomial_2_log',
-    'neg_binomial_2_log_glm',
-    'normal',
-    'normal_id_glm',
-    'ordered_logistic',
-    'ordered_logistic_glm',
-    'ordered_probit',
-    'pareto',
-    'pareto_type_2',
-    'poisson',
-    'poisson_log',
-    'poisson_log_glm',
-    'rayleigh',
-    'scaled_inv_chi_square',
-    'skew_double_exponential',
-    'skew_normal',
-    'std_normal',
-    'std_normal_log',
-    'student_t',
-    'uniform',
-    'von_mises',
-    'weibull',
-    'wiener',
-    'wishart',
-    'wishart_cholesky'
-  ];
-
-  const BLOCK_COMMENT = hljs.COMMENT(
-    /\/\*/,
-    /\*\//,
-    {
-      relevance: 0,
-      contains: [
-        {
-          scope: 'doctag',
-          match: /@(return|param)/
-        }
-      ]
-    }
-  );
-
-  const INCLUDE = {
-    scope: 'meta',
-    begin: /#include\b/,
-    end: /$/,
-    contains: [
-      {
-        match: /[a-z][a-z-._]+/,
-        scope: 'string'
-      },
-      hljs.C_LINE_COMMENT_MODE
-    ]
-  };
-
-  const RANGE_CONSTRAINTS = [
-    "lower",
-    "upper",
-    "offset",
-    "multiplier"
-  ];
-
-  return {
-    name: 'Stan',
-    aliases: [ 'stanfuncs' ],
-    keywords: {
-      $pattern: hljs.IDENT_RE,
-      title: BLOCKS,
-      type: TYPES,
-      keyword: STATEMENTS,
-      built_in: FUNCTIONS
-    },
-    contains: [
-      hljs.C_LINE_COMMENT_MODE,
-      INCLUDE,
-      hljs.HASH_COMMENT_MODE,
-      BLOCK_COMMENT,
-      {
-        scope: 'built_in',
-        match: /\s(pi|e|sqrt2|log2|log10)(?=\()/,
-        relevance: 0
-      },
-      {
-        match: regex.concat(/[<,]\s*/, regex.either(...RANGE_CONSTRAINTS), /\s*=/),
-        keywords: RANGE_CONSTRAINTS
-      },
-      {
-        scope: 'keyword',
-        match: /\btarget(?=\s*\+=)/,
-      },
-      {
-        // highlights the 'T' in T[,] for only Stan language distributrions
-        match: [
-          /~\s*/,
-          regex.either(...DISTRIBUTIONS),
-          /(?:\(\))/,
-          /\s*T(?=\s*\[)/
-        ],
-        scope: {
-          2: "built_in",
-          4: "keyword"
-        }
-      },
-      {
-        // highlights distributions that end with special endings
-        scope: 'built_in',
-        keywords: DISTRIBUTIONS,
-        begin: regex.concat(/\w*/, regex.either(...DISTRIBUTIONS), /(_lpdf|_lupdf|_lpmf|_cdf|_lcdf|_lccdf|_qf)(?=\s*[\(.*\)])/)
-      },
-      {
-        // highlights distributions after ~
-        begin: [
-          /~/,
-          /\s*/,
-          regex.concat(regex.either(...DISTRIBUTIONS), /(?=\s*[\(.*\)])/)
-        ],
-        scope: { 3: "built_in" }
-      },
-      {
-        // highlights user defined distributions after ~
-        begin: [
-          /~/,
-          /\s*\w+(?=\s*[\(.*\)])/,
-          '(?!.*/\b(' + regex.either(...DISTRIBUTIONS) + ')\b)'
-        ],
-        scope: { 2: "title.function" }
-      },
-      {
-        // highlights user defined distributions with special endings
-        scope: 'title.function',
-        begin: /\w*(_lpdf|_lupdf|_lpmf|_cdf|_lcdf|_lccdf|_qf)(?=\s*[\(.*\)])/
-      },
-      {
-        scope: 'number',
-        match: regex.concat(
-          // Comes from @RunDevelopment accessed 11/29/2021 at
-          // https://github.com/PrismJS/prism/blob/c53ad2e65b7193ab4f03a1797506a54bbb33d5a2/components/prism-stan.js#L56
-
-          // start of big noncapture group which
-          // 1. gets numbers that are by themselves
-          // 2. numbers that are separated by _
-          // 3. numbers that are separted by .
-          /(?:\b\d+(?:_\d+)*(?:\.(?:\d+(?:_\d+)*)?)?|\B\.\d+(?:_\d+)*)/,
-          // grabs scientific notation
-          // grabs complex numbers with i
-          /(?:[eE][+-]?\d+(?:_\d+)*)?i?(?!\w)/
-        ),
-        relevance: 0
-      },
-      {
-        scope: 'string',
-        begin: /"/,
-        end: /"/
-      }
-    ]
-  };
-}
-
-module.exports = stan;

package/highlight.js/lib/languages/stan.js.js

@@ -1,10 +0,0 @@
-function emitWarning() {
-    if (!emitWarning.warned) {
-      emitWarning.warned = true;
-      console.log(
-        'Deprecation (warning): Using file extension in specifier is deprecated, use "highlight.js/lib/languages/stan" instead of "highlight.js/lib/languages/stan.js"'
-      );
-    }
-  }
-  emitWarning();
-    module.exports = require('./stan.js');

package/highlight.js/lib/languages/stata.js

@@ -1,53 +0,0 @@
-/*
-Language: Stata
-Author: Brian Quistorff <bquistorff@gmail.com>
-Contributors: Drew McDonald <drewmcdo@gmail.com>
-Description: Stata is a general-purpose statistical software package created in 1985 by StataCorp.
-Website: https://en.wikipedia.org/wiki/Stata
-Category: scientific
-*/
-
-/*
-  This is a fork and modification of Drew McDonald's file (https://github.com/drewmcdonald/stata-highlighting). I have also included a list of builtin commands from https://bugs.kde.org/show_bug.cgi?id=135646.
-*/
-
-function stata(hljs) {
-  return {
-    name: 'Stata',
-    aliases: [
-      'do',
-      'ado'
-    ],
-    case_insensitive: true,
-    keywords: 'if else in foreach for forv forva forval forvalu forvalue forvalues by bys bysort xi quietly qui capture about ac ac_7 acprplot acprplot_7 adjust ado adopath adoupdate alpha ameans an ano anov anova anova_estat anova_terms anovadef aorder ap app appe appen append arch arch_dr arch_estat arch_p archlm areg areg_p args arima arima_dr arima_estat arima_p as asmprobit asmprobit_estat asmprobit_lf asmprobit_mfx__dlg asmprobit_p ass asse asser assert avplot avplot_7 avplots avplots_7 bcskew0 bgodfrey bias binreg bip0_lf biplot bipp_lf bipr_lf bipr_p biprobit bitest bitesti bitowt blogit bmemsize boot bootsamp bootstrap bootstrap_8 boxco_l boxco_p boxcox boxcox_6 boxcox_p bprobit br break brier bro brow brows browse brr brrstat bs bs_7 bsampl_w bsample bsample_7 bsqreg bstat bstat_7 bstat_8 bstrap bstrap_7 bubble bubbleplot ca ca_estat ca_p cabiplot camat canon canon_8 canon_8_p canon_estat canon_p cap caprojection capt captu captur capture cat cc cchart cchart_7 cci cd censobs_table centile cf char chdir checkdlgfiles checkestimationsample checkhlpfiles checksum chelp ci cii cl class classutil clear cli clis clist clo clog clog_lf clog_p clogi clogi_sw clogit clogit_lf clogit_p clogitp clogl_sw cloglog clonevar clslistarray cluster cluster_measures cluster_stop cluster_tree cluster_tree_8 clustermat cmdlog cnr cnre cnreg cnreg_p cnreg_sw cnsreg codebook collaps4 collapse colormult_nb colormult_nw compare compress conf confi confir confirm conren cons const constr constra constrai constrain constraint continue contract copy copyright copysource cor corc corr corr2data corr_anti corr_kmo corr_smc corre correl correla correlat correlate corrgram cou coun count cox cox_p cox_sw coxbase coxhaz coxvar cprplot cprplot_7 crc cret cretu cretur creturn cross cs cscript cscript_log csi ct ct_is ctset ctst_5 ctst_st cttost cumsp cumsp_7 cumul cusum cusum_7 cutil d|0 datasig datasign datasigna datasignat datasignatu datasignatur datasignature datetof db dbeta de dec deco decod decode deff des desc descr descri describ describe destring dfbeta dfgls dfuller di di_g dir dirstats dis discard disp disp_res disp_s displ displa display distinct do doe doed doedi doedit dotplot dotplot_7 dprobit drawnorm drop ds ds_util dstdize duplicates durbina dwstat dydx e|0 ed edi edit egen eivreg emdef en enc enco encod encode eq erase ereg ereg_lf ereg_p ereg_sw ereghet ereghet_glf ereghet_glf_sh ereghet_gp ereghet_ilf ereghet_ilf_sh ereghet_ip eret eretu eretur ereturn err erro error esize est est_cfexist est_cfname est_clickable est_expand est_hold est_table est_unhold est_unholdok estat estat_default estat_summ estat_vce_only esti estimates etodow etof etomdy ex exi exit expand expandcl fac fact facto factor factor_estat factor_p factor_pca_rotated factor_rotate factormat fcast fcast_compute fcast_graph fdades fdadesc fdadescr fdadescri fdadescrib fdadescribe fdasav fdasave fdause fh_st file open file read file close file filefilter fillin find_hlp_file findfile findit findit_7 fit fl fli flis flist for5_0 forest forestplot form forma format fpredict frac_154 frac_adj frac_chk frac_cox frac_ddp frac_dis frac_dv frac_in frac_mun frac_pp frac_pq frac_pv frac_wgt frac_xo fracgen fracplot fracplot_7 fracpoly fracpred fron_ex fron_hn fron_p fron_tn fron_tn2 frontier ftodate ftoe ftomdy ftowdate funnel funnelplot g|0 gamhet_glf gamhet_gp gamhet_ilf gamhet_ip gamma gamma_d2 gamma_p gamma_sw gammahet gdi_hexagon gdi_spokes ge gen gene gener genera generat generate genrank genstd genvmean gettoken gl gladder gladder_7 glim_l01 glim_l02 glim_l03 glim_l04 glim_l05 glim_l06 glim_l07 glim_l08 glim_l09 glim_l10 glim_l11 glim_l12 glim_lf glim_mu glim_nw1 glim_nw2 glim_nw3 glim_p glim_v1 glim_v2 glim_v3 glim_v4 glim_v5 glim_v6 glim_v7 glm glm_6 glm_p glm_sw glmpred glo glob globa global glogit glogit_8 glogit_p gmeans gnbre_lf gnbreg gnbreg_5 gnbreg_p gomp_lf gompe_sw gomper_p gompertz gompertzhet gomphet_glf gomphet_glf_sh gomphet_gp gomphet_ilf gomphet_ilf_sh gomphet_ip gphdot gphpen gphprint gprefs gprobi_p gprobit gprobit_8 gr gr7 gr_copy gr_current gr_db gr_describe gr_dir gr_draw gr_draw_replay gr_drop gr_edit gr_editviewopts gr_example gr_example2 gr_export gr_print gr_qscheme gr_query gr_read gr_rename gr_replay gr_save gr_set gr_setscheme gr_table gr_undo gr_use graph graph7 grebar greigen greigen_7 greigen_8 grmeanby grmeanby_7 gs_fileinfo gs_filetype gs_graphinfo gs_stat gsort gwood h|0 hadimvo hareg hausman haver he heck_d2 heckma_p heckman heckp_lf heckpr_p heckprob hel help hereg hetpr_lf hetpr_p hetprob hettest hexdump hilite hist hist_7 histogram hlogit hlu hmeans hotel hotelling hprobit hreg hsearch icd9 icd9_ff icd9p iis impute imtest inbase include inf infi infil infile infix inp inpu input ins insheet insp inspe inspec inspect integ inten intreg intreg_7 intreg_p intrg2_ll intrg_ll intrg_ll2 ipolate iqreg ir irf irf_create irfm iri is_svy is_svysum isid istdize ivprob_1_lf ivprob_lf ivprobit ivprobit_p ivreg ivreg_footnote ivtob_1_lf ivtob_lf ivtobit ivtobit_p jackknife jacknife jknife jknife_6 jknife_8 jkstat joinby kalarma1 kap kap_3 kapmeier kappa kapwgt kdensity kdensity_7 keep ksm ksmirnov ktau kwallis l|0 la lab labbe labbeplot labe label labelbook ladder levels levelsof leverage lfit lfit_p li lincom line linktest lis list lloghet_glf lloghet_glf_sh lloghet_gp lloghet_ilf lloghet_ilf_sh lloghet_ip llogi_sw llogis_p llogist llogistic llogistichet lnorm_lf lnorm_sw lnorma_p lnormal lnormalhet lnormhet_glf lnormhet_glf_sh lnormhet_gp lnormhet_ilf lnormhet_ilf_sh lnormhet_ip lnskew0 loadingplot loc loca local log logi logis_lf logistic logistic_p logit logit_estat logit_p loglogs logrank loneway lookfor lookup lowess lowess_7 lpredict lrecomp lroc lroc_7 lrtest ls lsens lsens_7 lsens_x lstat ltable ltable_7 ltriang lv lvr2plot lvr2plot_7 m|0 ma mac macr macro makecns man manova manova_estat manova_p manovatest mantel mark markin markout marksample mat mat_capp mat_order mat_put_rr 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