@pennyfarthing/core 9.1.2 → 9.3.0

package/pennyfarthing-dist/scripts/hooks/bell-mode-hook.sh

@@ -1,106 +0,0 @@
-#!/bin/bash
-#
-# Bell Mode PostToolUse Hook (Story MSSCI-12275)
-#
-# This hook is called by Claude Code after each tool execution.
-# When bell mode is enabled and there are queued messages, it returns
-# the first queued message as additionalContext to be injected into
-# Claude's next API call.
-#
-# Configuration files:
-#   .pennyfarthing/config.local.yaml - workflow.bell_mode: true/false
-#   .pennyfarthing/bell-queue.json - [{ "text": "...", "images": [...] }, ...]
-#
-# Output format (when injecting):
-#   {
-#     "hookSpecificOutput": {
-#       "hookEventName": "PostToolUse",
-#       "additionalContext": "User feedback: <message>"
-#     }
-#   }
-#
-# Output when disabled or queue empty: (nothing - exit 0)
-
-# Find project root (walk up to find .pennyfarthing)
-PROJECT_ROOT="$PWD"
-while [[ "$PROJECT_ROOT" != "/" ]]; do
-  if [[ -d "$PROJECT_ROOT/.pennyfarthing" ]]; then
-    break
-  fi
-  PROJECT_ROOT="$(dirname "$PROJECT_ROOT")"
-done
-
-if [[ ! -d "$PROJECT_ROOT/.pennyfarthing" ]]; then
-  # No .pennyfarthing directory found - exit silently
-  exit 0
-fi
-
-CONFIG_LOCAL_YAML="$PROJECT_ROOT/.pennyfarthing/config.local.yaml"
-BELL_QUEUE_FILE="$PROJECT_ROOT/.pennyfarthing/bell-queue.json"
-
-# Check if bell mode is enabled in config.local.yaml
-if [[ ! -f "$CONFIG_LOCAL_YAML" ]]; then
-  exit 0
-fi
-
-# Parse YAML to check workflow.bell_mode - look for "bell_mode: true"
-# This handles both "bell_mode: true" and "  bell_mode: true" (indented under workflow)
-ENABLED=$(grep -E '^\s*bell_mode:\s*true' "$CONFIG_LOCAL_YAML" 2>/dev/null || true)
-if [[ -z "$ENABLED" ]]; then
-  exit 0
-fi
-
-# Check if queue file exists and has messages
-if [[ ! -f "$BELL_QUEUE_FILE" ]]; then
-  exit 0
-fi
-
-# Read queue and check if non-empty
-QUEUE_CONTENT=$(cat "$BELL_QUEUE_FILE" 2>/dev/null)
-if [[ -z "$QUEUE_CONTENT" ]] || [[ "$QUEUE_CONTENT" == "[]" ]]; then
-  exit 0
-fi
-
-# Extract first message text using simple parsing
-# The queue format is: [{"text":"...","images":[...]}, ...]
-FIRST_MESSAGE_TEXT=$(echo "$QUEUE_CONTENT" | sed -n 's/.*"text"[[:space:]]*:[[:space:]]*"\([^"]*\)".*/\1/p' | head -1)
-
-if [[ -z "$FIRST_MESSAGE_TEXT" ]]; then
-  exit 0
-fi
-
-# Get Cyclist port (if running)
-CYCLIST_PORT=""
-PORT_FILE="$PROJECT_ROOT/.cyclist-port"
-if [[ -f "$PORT_FILE" ]]; then
-  CYCLIST_PORT=$(cat "$PORT_FILE" 2>/dev/null)
-fi
-
-# Output the hook response JSON
-cat << EOF
-{
-  "hookSpecificOutput": {
-    "hookEventName": "PostToolUse",
-    "additionalContext": "User feedback: $FIRST_MESSAGE_TEXT"
-  }
-}
-EOF
-
-# Remove the first message from the queue and notify Cyclist
-# Run in background to avoid blocking hook response
-(
-  # Dequeue using jq if available
-  if command -v jq &> /dev/null; then
-    jq 'if length > 0 then .[1:] else [] end' "$BELL_QUEUE_FILE" > "$BELL_QUEUE_FILE.tmp" 2>/dev/null && mv "$BELL_QUEUE_FILE.tmp" "$BELL_QUEUE_FILE"
-  fi
-
-  # Notify Cyclist browser to dequeue and display the message
-  if [[ -n "$CYCLIST_PORT" ]] && [[ "$CYCLIST_PORT" =~ ^[0-9]+$ ]]; then
-    curl -s -X POST "http://localhost:$CYCLIST_PORT/api/bell-consumed" \
-      -H "Content-Type: application/json" \
-      -d "{\"text\": \"$FIRST_MESSAGE_TEXT\"}" \
-      >/dev/null 2>&1 || true
-  fi
-) &
-
-exit 0

package/pennyfarthing-dist/scripts/hooks/context-circuit-breaker.sh

@@ -1,95 +0,0 @@
-#!/usr/bin/env zsh
-# Context circuit breaker hook: Block tool execution at 85% context usage
-# Called by Claude Code before tool calls (PreToolUse)
-#
-# Input: JSON via stdin with tool_name, tool_input, session_id
-# Output: Exit 0 to allow, Exit 2 to block (stderr shown to Claude)
-#
-# This hook provides a hard stop when context is critically high,
-# unlike context-warning.sh which only warns.
-#
-# When triggered, automatically saves the active agent to a checkpoint
-# so /continue-session can restore it with FULL tier.
-
-# Read stdin to get session_id (required by hook protocol)
-INPUT=$(cat)
-
-# Script location for sibling script references
-SCRIPT_DIR="$(cd "$(dirname "$0")" && pwd)"
-
-# Get context percentage from check-context.sh
-CONTEXT_SCRIPT="$SCRIPT_DIR/../check-context.sh"
-if [[ ! -x "$CONTEXT_SCRIPT" ]]; then
-    # graceful degradation: if check-context.sh not found, allow the tool
-    exit 0
-fi
-
-# Run check-context.sh and parse output
-eval "$("$CONTEXT_SCRIPT" 2>/dev/null)" 2>/dev/null
-
-# graceful degradation: if we can't get context, allow the tool
-if [[ -z "$CONTEXT_PERCENT" ]] || [[ "$CONTEXT_PERCENT" == "null" ]]; then
-    exit 0
-fi
-
-# Load critical threshold (default 80%)
-CRITICAL_THRESHOLD="${CRITICAL_THRESHOLD:-80}"
-
-# Check if at or above critical threshold
-if [[ "$CONTEXT_PERCENT" -ge "$CRITICAL_THRESHOLD" ]] 2>/dev/null; then
-    # Auto-save active agent to checkpoint before blocking
-    # This allows /continue-session to restore with FULL tier
-    source "$SCRIPT_DIR/../lib/checkpoint.sh" 2>/dev/null || true
-
-    # Get session_id from input JSON
-    SESSION_ID=""
-    if command -v jq &>/dev/null && [[ -n "$INPUT" ]]; then
-        SESSION_ID=$(echo "$INPUT" | jq -r '.session_id // empty' 2>/dev/null)
-    fi
-
-    # Look up active agent for this session
-    ACTIVE_AGENT=""
-    AGENT_FILE="${CLAUDE_PROJECT_DIR:-.}/.session/agents/${SESSION_ID}"
-    if [[ -n "$SESSION_ID" && -f "$AGENT_FILE" ]]; then
-        ACTIVE_AGENT=$(cat "$AGENT_FILE" 2>/dev/null)
-    fi
-
-    # Save agent checkpoint if we found one
-    if [[ -n "$ACTIVE_AGENT" ]]; then
-        checkpoint_save "circuit_breaker_agent" "$ACTIVE_AGENT" 2>/dev/null || true
-    fi
-
-    # Send error message to stderr (Claude will see this)
-    cat >&2 << EOF
-CONTEXT CIRCUIT BREAKER TRIGGERED
-
-Context usage: ${CONTEXT_PERCENT}% - CRITICAL (threshold: ${CRITICAL_THRESHOLD}%)
-
-Tool execution BLOCKED. You must stop and hand off.
-EOF
-
-    # Include agent info if available
-    if [[ -n "$ACTIVE_AGENT" ]]; then
-        cat >&2 << EOF
-
-Active agent saved: ${ACTIVE_AGENT}
-The agent will be restored with FULL context when you run /continue-session.
-EOF
-    fi
-
-    cat >&2 << EOF
-
-Required actions:
-1. Commit any pending changes
-2. Tell user to start fresh session with /continue-session
-
-DO NOT attempt further tool calls. This is a hard stop.
-
-To resume later: /continue-session
-EOF
-    # Exit 2 blocks the tool execution
-    exit 2
-fi
-
-# Below threshold: allow the tool
-exit 0

package/pennyfarthing-dist/scripts/hooks/context-warning.sh

@@ -1,65 +0,0 @@
-#!/usr/bin/env zsh
-# Context warning hook: Warn agent when context usage is high
-# Called by Claude Code before tool calls (PreToolUse)
-#
-# Input: JSON via stdin with tool_name, tool_input
-# Output: Warning message to stdout if context > 60%
-# Always exits 0 (warning only, never blocks)
-
-# Read and discard stdin (required by hook protocol)
-cat > /dev/null
-
-# Script location for sibling script references
-SCRIPT_DIR="$(cd "$(dirname "$0")" && pwd)"
-
-# Get context percentage from check-context.sh
-CONTEXT_SCRIPT="$SCRIPT_DIR/../check-context.sh"
-if [[ ! -x "$CONTEXT_SCRIPT" ]]; then
-    exit 0  # Can't check, allow silently
-fi
-
-# Run check-context.sh and parse output
-eval "$("$CONTEXT_SCRIPT" 2>/dev/null)" 2>/dev/null
-
-# Check if we got a valid percentage
-if [[ -z "$CONTEXT_PERCENT" ]] || [[ "$CONTEXT_PERCENT" == "null" ]]; then
-    exit 0  # Can't determine, allow silently
-fi
-
-# Load thresholds from settings (defaults match check-context.sh)
-WARNING_THRESHOLD="${WARNING_THRESHOLD:-60}"
-CRITICAL_THRESHOLD="${CRITICAL_THRESHOLD:-85}"
-
-# Output warning if above threshold
-if [[ "$CONTEXT_PERCENT" -ge "$CRITICAL_THRESHOLD" ]] 2>/dev/null; then
-    cat << EOF
-
----
-CONTEXT WARNING: ${CONTEXT_PERCENT}% (CRITICAL)
-
-Context usage is critically high. Recommended actions:
-1. Complete current task immediately
-2. Commit any pending changes
-3. Hand off to next agent or ask user to start fresh session
-
-Do NOT start new subtasks. Wrap up and hand off.
----
-
-EOF
-elif [[ "$CONTEXT_PERCENT" -ge "$WARNING_THRESHOLD" ]] 2>/dev/null; then
-    cat << EOF
-
----
-CONTEXT WARNING: ${CONTEXT_PERCENT}%
-
-Context usage is high. Consider:
-- Wrapping up current task soon
-- Preparing for handoff to next agent
-- Avoiding large file reads or complex operations
----
-
-EOF
-fi
-
-# Always allow the tool (we're warning, not blocking)
-exit 0

package/pennyfarthing-dist/scripts/hooks/otel-auto-config.sh

@@ -1,35 +0,0 @@
-#!/bin/bash
-# otel-auto-config.sh - Auto-configure OTEL for Cyclist web mode (Story 20-1)
-#
-# This hook checks for a .cyclist-port file in the project directory.
-# If found, it sets the OTEL environment variables to connect Claude Code
-# telemetry to the running Cyclist server.
-#
-# Usage: Source this script early in Claude Code startup to enable auto-config.
-#   source /path/to/otel-auto-config.sh
-#
-# Prerequisites:
-#   - Cyclist must be running in web mode (writes .cyclist-port file)
-#   - CLAUDE_PROJECT_DIR must be set (standard in Claude Code environment)
-
-# Determine project directory
-PROJECT_DIR="${CLAUDE_PROJECT_DIR:-$(pwd)}"
-PORT_FILE="$PROJECT_DIR/.cyclist-port"
-
-# Check if port file exists
-if [[ -f "$PORT_FILE" ]]; then
-  # Read the port number
-  PORT=$(cat "$PORT_FILE" 2>/dev/null)
-
-  # Validate port is a number
-  if [[ "$PORT" =~ ^[0-9]+$ ]]; then
-    # Set OTEL environment variables
-    export OTEL_EXPORTER_OTLP_PROTOCOL="http/json"
-    export OTEL_EXPORTER_OTLP_ENDPOINT="http://localhost:$PORT"
-
-    # Optional: Log for debugging (can be silenced by setting CYCLIST_QUIET=1)
-    if [[ -z "$CYCLIST_QUIET" ]]; then
-      echo "[otel-auto-config] Configured OTEL to http://localhost:$PORT" >&2
-    fi
-  fi
-fi

package/pennyfarthing-dist/scripts/hooks/post-merge.sh

@@ -1,150 +0,0 @@
-#!/bin/bash
-# post-merge.sh - Git hook for automatic sprint YAML updates after PR merge
-# Story 8-1: Git Hook for PR Merge Detection
-#
-# This hook runs after git pull or git merge operations, detecting when a
-# story branch is merged and automatically updating the sprint YAML status.
-#
-# Installation:
-#   Installed to .git/hooks/post-merge by pennyfarthing init or doctor --fix
-#
-# Dependencies:
-#   - yq (for YAML manipulation)
-#   - sprint-common.sh (for shared sprint functions)
-
-set -uo pipefail
-
-# Self-locate (resolve symlink first for .git/hooks/ symlinks)
-REAL_SCRIPT="$(readlink -f "${BASH_SOURCE[0]:-$0}" 2>/dev/null || realpath "${BASH_SOURCE[0]:-$0}" 2>/dev/null || echo "${BASH_SOURCE[0]:-$0}")"
-source "$(dirname "$REAL_SCRIPT")/../lib/find-root.sh"
-
-# PROJECT_ROOT is now set by find-root.sh
-SESSION_DIR="$PROJECT_ROOT/.session"
-SPRINT_FILE="$PROJECT_ROOT/sprint/current-sprint.yaml"
-
-# Source sprint-common.sh for shared functions
-SPRINT_COMMON="$PROJECT_ROOT/.pennyfarthing/scripts/sprint/sprint-common.sh"
-if [[ -f "$SPRINT_COMMON" ]]; then
-    # shellcheck source=/dev/null
-    source "$SPRINT_COMMON"
-fi
-
-# extract_story_id BRANCH_NAME
-# Extract story ID from branch name pattern feat/X-Y-*
-# Returns: X-Y (e.g., "8-1" from "feat/8-1-merge-detection")
-# Returns empty for non-matching branches
-extract_story_id() {
-    local branch="$1"
-
-    # Match pattern: feat/EPIC-STORY-description or feat/EPIC-STORY
-    if [[ "$branch" =~ ^feat/([0-9]+-[0-9]+) ]]; then
-        echo "${BASH_REMATCH[1]}"
-    fi
-    # Returns empty string for non-matching patterns
-}
-
-# update_story_status STORY_ID NEW_STATUS
-# Update story status in sprint YAML and add completed date
-# Uses yq for YAML manipulation
-update_story_status() {
-    local story_id="$1"
-    local new_status="${2:-done}"
-    local completed_date
-    completed_date=$(date +%Y-%m-%d)
-
-    if [[ ! -f "$SPRINT_FILE" ]]; then
-        return 1
-    fi
-
-    # Check if yq is available
-    if ! command -v yq &>/dev/null; then
-        echo "Warning: yq not found, cannot update sprint YAML" >&2
-        return 1
-    fi
-
-    # Extract epic and story numbers
-    local epic_num="${story_id%%-*}"
-    local story_num="${story_id#*-}"
-
-    # Update status and add completed date using yq
-    yq eval -i "
-        (.epics[] | select(.id == \"$epic_num\") | .stories[] | select(.id == \"$story_num\")).status = \"$new_status\" |
-        (.epics[] | select(.id == \"$epic_num\") | .stories[] | select(.id == \"$story_num\")).completed = \"$completed_date\"
-    " "$SPRINT_FILE"
-
-    return $?
-}
-
-# log_reconciliation STORY_ID MESSAGE
-# Log reconciliation event to .session/ directory
-log_reconciliation() {
-    local story_id="$1"
-    local message="${2:-Merge detected}"
-    local timestamp
-    timestamp=$(date +"%Y-%m-%d %H:%M:%S")
-
-    # Ensure session directory exists
-    mkdir -p "$SESSION_DIR"
-
-    local log_file="$SESSION_DIR/reconciliation.log"
-
-    echo "[$timestamp] Story $story_id: $message" >> "$log_file"
-}
-
-# Main hook logic
-main() {
-    # Get the current branch after merge
-    local current_branch
-    current_branch=$(git rev-parse --abbrev-ref HEAD 2>/dev/null)
-
-    # Only process if we're on develop or main (after a PR merge)
-    if [[ "$current_branch" != "develop" && "$current_branch" != "main" ]]; then
-        exit 0
-    fi
-
-    # Get the branches that were just merged
-    # The reflog shows what was merged: the previous HEAD and the merged commit
-    local merged_refs
-    merged_refs=$(git reflog -1 --format='%gs' 2>/dev/null)
-
-    # Check if this was a merge operation
-    if [[ ! "$merged_refs" =~ merge ]]; then
-        # Could be a pull with fast-forward - check for merged branches
-        # Look at recently merged branches by checking merge commits
-        :
-    fi
-
-    # Find recently merged feature branches by examining merge commits
-    local merge_commits
-    merge_commits=$(git log --merges --oneline -10 --since="5 minutes ago" 2>/dev/null)
-
-    # Extract branch names from merge commits
-    while IFS= read -r commit_line; do
-        # Parse "Merge pull request #X from user/feat/X-Y-description"
-        # or "Merge branch 'feat/X-Y-description'"
-        local branch_name=""
-
-        if [[ "$commit_line" =~ feat/([0-9]+-[0-9]+[a-zA-Z0-9-]*) ]]; then
-            branch_name="feat/${BASH_REMATCH[1]}"
-        fi
-
-        if [[ -n "$branch_name" ]]; then
-            local story_id
-            story_id=$(extract_story_id "$branch_name")
-
-            if [[ -n "$story_id" ]]; then
-                # Update sprint YAML
-                if update_story_status "$story_id" "done"; then
-                    log_reconciliation "$story_id" "Status updated to 'done' after merge (branch: $branch_name)"
-                else
-                    log_reconciliation "$story_id" "Failed to update status (branch: $branch_name)"
-                fi
-            fi
-        fi
-    done <<< "$merge_commits"
-}
-
-# Only run main when executed directly (not when sourced for testing)
-if [[ "${BASH_SOURCE[0]}" == "${0}" ]]; then
-    main "$@"
-fi

package/pennyfarthing-dist/scripts/hooks/pre-commit.sh

@@ -1,102 +0,0 @@
-#!/bin/bash
-# pre-commit.sh - Git hook to enforce branch protection and agent validation
-#
-# Checks:
-# 1. Prevents direct commits to protected branches (main, develop)
-#    Exception: sprint/ folder commits allowed on develop
-# 2. Validates agent files when pennyfarthing-dist/agents/*.md is modified
-#
-# Installation:
-#   Installed to .git/hooks/pre-commit by pennyfarthing init or doctor --fix
-#   Or symlink: ln -sf ../../pennyfarthing-dist/scripts/hooks/pre-commit.sh .git/hooks/pre-commit
-
-set -uo pipefail
-
-# Find project root (resolve symlink first for .git/hooks/ symlinks)
-REAL_SCRIPT="$(readlink -f "${BASH_SOURCE[0]:-$0}" 2>/dev/null || realpath "${BASH_SOURCE[0]:-$0}" 2>/dev/null || echo "${BASH_SOURCE[0]:-$0}")"
-source "$(dirname "$REAL_SCRIPT")/../lib/find-root.sh"
-
-# =============================================================================
-# Check 1: Branch Protection
-# =============================================================================
-
-BRANCH=$(git rev-parse --abbrev-ref HEAD 2>/dev/null)
-PROTECTED_BRANCHES="^(main|develop)$"
-
-if [[ $BRANCH =~ $PROTECTED_BRANCHES ]]; then
-    # Special case: Allow sprint/ folder commits on develop branch
-    if [[ $BRANCH == "develop" ]]; then
-        STAGED_FILES=$(git diff --cached --name-only)
-        NON_SPRINT_FILES=$(echo "$STAGED_FILES" | grep -v "^sprint/")
-
-        # If all staged files are in sprint/, allow the commit
-        if [ -z "$NON_SPRINT_FILES" ] && [ -n "$STAGED_FILES" ]; then
-            # Continue to agent validation check
-            :
-        else
-            echo ""
-            echo "COMMIT BLOCKED"
-            echo ""
-            echo "You are trying to commit directly to: $BRANCH"
-            echo "This violates the git workflow rules."
-            echo ""
-            echo "Protected branches: main, develop"
-            echo ""
-            echo "What to do:"
-            echo "1. Create a feature branch:"
-            echo "   git checkout -b <type>/<epic-story>-<description>"
-            echo ""
-            echo "2. Example:"
-            echo "   git checkout -b feat/8-2-add-authentication"
-            echo ""
-            echo "3. Then commit your changes on the feature branch"
-            echo ""
-            echo "Exception: Sprint tracking files (sprint/*) can be committed to develop"
-            echo ""
-            exit 1
-        fi
-    else
-        echo ""
-        echo "COMMIT BLOCKED - Cannot commit directly to $BRANCH"
-        echo ""
-        exit 1
-    fi
-fi
-
-# =============================================================================
-# Check 2: Agent File Validation
-# =============================================================================
-
-STAGED_FILES=$(git diff --cached --name-only 2>/dev/null || true)
-AGENT_FILES=$(echo "$STAGED_FILES" | grep "^pennyfarthing-dist/agents/.*\.md$" || true)
-
-if [[ -n "$AGENT_FILES" ]]; then
-    echo "Agent files staged for commit:"
-    echo "$AGENT_FILES" | sed 's/^/  /'
-    echo ""
-
-    VALIDATOR="$PROJECT_ROOT/pennyfarthing-dist/scripts/validation/validate-agent-schema.sh"
-
-    if [[ -x "$VALIDATOR" ]]; then
-        echo "Running agent schema validation..."
-        echo ""
-
-        if ! "$VALIDATOR"; then
-            echo ""
-            echo "COMMIT BLOCKED - Agent validation failed"
-            echo ""
-            echo "Fix the validation errors above and try again."
-            echo "Run 'just validate-agents -v' for detailed output."
-            echo ""
-            exit 1
-        fi
-
-        echo ""
-        echo "✓ Agent validation passed"
-    else
-        echo "Warning: Agent validator not found at $VALIDATOR"
-        echo "Skipping agent validation."
-    fi
-fi
-
-exit 0

package/pennyfarthing-dist/scripts/hooks/pre-edit-check.sh

@@ -1,71 +0,0 @@
-#!/usr/bin/env zsh
-# Pre-edit hook: Verify edits don't touch protected files
-# Called by Claude Code before Edit/Write tool calls
-#
-# Input: JSON via stdin with tool_name, tool_input
-# Output: Exit 0 to allow, Exit 2 to block (stderr shown to Claude)
-
-set -euo pipefail
-
-# Read input from stdin
-input=$(cat)
-
-# Extract file path from tool input
-file_path=$(echo "$input" | jq -r '.tool_input.file_path // .tool_input.path // ""')
-
-# Protected patterns (files that should never be edited automatically)
-protected_patterns=(
-    "*.env"
-    "*.pem"
-    "*.key"
-    "*credentials*"
-    "*secrets*"
-    ".git/*"
-    "node_modules/*"
-    "vendor/*"
-)
-
-# Pennyfarthing managed files protection
-# These are managed by `pennyfarthing update`, don't edit directly
-# EXCEPTION: If we ARE in the pennyfarthing library itself, allow edits
-is_pennyfarthing_lib=false
-if [[ -d "${CLAUDE_PROJECT_DIR:-$PWD}/pennyfarthing-dist" ]]; then
-    is_pennyfarthing_lib=true
-fi
-
-if [[ "$file_path" == *".claude/pennyfarthing/"* ]] && [[ "$is_pennyfarthing_lib" == "false" ]]; then
-    echo "BLOCKED: Cannot edit managed pennyfarthing files." >&2
-    echo "File: $file_path" >&2
-    echo "" >&2
-    echo "These files are managed by pennyfarthing and will be overwritten on update." >&2
-    echo "Instead:" >&2
-    echo "  - Put project-specific customizations in .claude/project/" >&2
-    echo "  - For framework changes, edit the pennyfarthing repo and run 'pennyfarthing update'" >&2
-    exit 2
-fi
-
-# Check if file matches any protected pattern
-for pattern in "${protected_patterns[@]}"; do
-    if [[ "$file_path" == $pattern ]]; then
-        echo "BLOCKED: Cannot edit protected file matching pattern: $pattern" >&2
-        echo "File: $file_path" >&2
-        exit 2
-    fi
-done
-
-# Additional check: warn on certain file types but allow
-warn_patterns=(
-    "*.md"
-    "*.json"
-)
-
-# For warnings, just log to stderr but allow (exit 0)
-for pattern in "${warn_patterns[@]}"; do
-    if [[ "$file_path" == $pattern ]]; then
-        # Could log warnings here if needed
-        :
-    fi
-done
-
-# Allow the edit
-exit 0

package/pennyfarthing-dist/scripts/hooks/pre-push.sh

@@ -1,42 +0,0 @@
-#!/bin/bash
-# pre-push.sh - Git hook to remind about Jira sync before push
-#
-# Checks if sprint files were modified and reminds to sync to Jira.
-#
-# Installation:
-#   Installed to .git/hooks/pre-push by pennyfarthing init or doctor --fix
-#   Or symlink: ln -sf ../../pennyfarthing-dist/scripts/hooks/pre-push.sh .git/hooks/pre-push
-
-set -uo pipefail
-
-# Self-locate (resolve symlink first for .git/hooks/ symlinks)
-REAL_SCRIPT="$(readlink -f "${BASH_SOURCE[0]:-$0}" 2>/dev/null || realpath "${BASH_SOURCE[0]:-$0}" 2>/dev/null || echo "${BASH_SOURCE[0]:-$0}")"
-if ! source "$(dirname "$REAL_SCRIPT")/../lib/find-root.sh" 2>/dev/null; then
-    exit 0
-fi
-
-SPRINT_FILE="$PROJECT_ROOT/sprint/current-sprint.yaml"
-
-# Check if there are uncommitted changes to sprint file
-if git diff --name-only | grep -q "sprint/current-sprint.yaml"; then
-    echo "Warning: current-sprint.yaml has uncommitted changes"
-    echo "   Consider committing before pushing"
-    echo ""
-fi
-
-# Get the range of commits being pushed
-REMOTE="$1"
-URL="$2"
-
-while read local_ref local_sha remote_ref remote_sha; do
-    if [ "$local_sha" != "0000000000000000000000000000000000000000" ]; then
-        # Check if sprint file changed in this push
-        if git diff --name-only "$remote_sha..$local_sha" 2>/dev/null | grep -q "sprint/current-sprint.yaml"; then
-            echo "Sprint changes detected in push"
-            echo "   Reminder: Sync to Jira if story statuses changed"
-            echo ""
-        fi
-    fi
-done
-
-exit 0

package/pennyfarthing-dist/scripts/hooks/question-reflector-check.sh

@@ -1,20 +0,0 @@
-#!/usr/bin/env bash
-#
-# Question Reflector Enforcement Hook (Stop hook / PreToolUse hook)
-#
-# Thin wrapper that delegates to question_reflector_check.py for the actual logic.
-# This allows the hook to be written in Python for easier testing and maintenance.
-#
-# Input (stdin): JSON with transcript_path, stop_hook_active, etc.
-# Output (stdout): JSON decision to allow or block
-#
-# Story: MSSCI-12393
-#
-
-set -euo pipefail
-
-# Get the directory where this script lives
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-
-# Delegate to Python implementation
-exec python3 "$SCRIPT_DIR/question_reflector_check.py"