@pennyfarthing/core 7.9.5 → 8.0.1

package/LICENSE

@@ -0,0 +1,14 @@
+Copyright (c) 2026 1898 & Co.
+
+All rights reserved.
+
+This software and associated documentation files (the "Software") are proprietary
+and confidential. No part of this Software may be reproduced, distributed, or
+transmitted in any form or by any means, including photocopying, recording, or
+other electronic or mechanical methods, without the prior written permission of
+the copyright holder.
+
+Unauthorized copying, modification, distribution, or use of this Software, via
+any medium, is strictly prohibited.
+
+For licensing inquiries, contact: 1898 & Co.

package/README.md

@@ -0,0 +1,209 @@
+# Pennyfarthing
+
+**v7.9.2** | *The outer loop goes once, the inner loop goes many times.*
+
+<img src="pennyfarthing.png" alt="Pennyfarthing Logo" width="75" style="float:left; margin:10px">
+
+A Claude Code agent orchestration framework built around three pillars: a flexible development platform, scientific personality research, and streamlined integrations.
+
+---
+
+## What is Pennyfarthing?
+
+### 1. Development Platform
+
+A multi-agent system with customizable BikeLane workflows for structured software development:
+
+- **19 Coordinated Agents** - SM, TEA, Dev, Reviewer, Architect, PM, and more
+- **19 BikeLane Workflows** - Phased (TDD, BDD, Trivial), Stepped (PRD, Architecture), Procedural (Brainstorming, Retrospective)
+- **45 Slash Commands** - Entry points for agent activation and workflows
+- **22 Skills** - Reusable knowledge domains (testing, code-review, jira, mermaid, etc.)
+- **Automatic Handoffs** - Context-aware agent transitions via subagent delegation
+
+### 2. Personality Research
+
+A scientific study of how strong personalities affect AI agent behavior:
+
+- **OCEAN Profiling** - Big Five personality scores for every character
+- **TRAIL Framework** - Categorizing errors (reasoning, planning, execution) and correlating with personality
+- **Benchmarking System** - `/solo`, `/benchmark-control`, `/benchmark` for statistical evaluation
+- **JobFair** - Discovering which characters excel at roles beyond their native specialization
+
+The 102 persona themes (Discworld, Star Trek, Breaking Bad, etc.) are instruments of inquiry, not decoration. Early findings show character expertise often trumps abstract personality scores.
+
+### 3. Integration & Tooling
+
+Smoothing out development processes:
+
+- **Jira Integration** - Bidirectional sync, epic auto-creation, sprint velocity
+- **Sprint Management** - Story tracking with `current-sprint.yaml`
+- **Cyclist Visual Terminal** - Rich UI with agent portraits, session stats, workflow visualization
+
+---
+
+### [**Explore the Research Showcase**](https://animated-meme-3e4494y.pages.github.io/)
+
+102 themes with OCEAN spider charts, benchmark tiers, and 1020 character profiles.
+
+---
+
+## Quick Start
+
+```bash
+cd your-project
+
+# Install CLI
+npm install --save-dev @pennyfarthing/core
+
+# Initialize (creates symlinks)
+npx pennyfarthing init
+
+# Verify installation
+npx pennyfarthing doctor
+
+# Start working (in Claude Code)
+/work
+```
+
+### Optional: Visual Terminal
+
+```bash
+# Install Cyclist (160 MB, includes portraits)
+npm install --save-dev @pennyfarthing/cyclist
+
+# Launch
+npx pennyfarthing cyclist
+```
+
+## BikeLane Workflows
+
+BikeLane is the umbrella workflow system supporting three types:
+
+| Type | Description | Examples |
+|------|-------------|----------|
+| **Phased** | Agent-driven with automatic handoffs | tdd, bdd, trivial, agent-docs |
+| **Stepped** | Progressive disclosure with user gates | prd, architecture, research, sprint-planning |
+| **Procedural** | Flexible agent-guided processes | brainstorming, code-review, retrospective |
+
+### Example: TDD Workflow (Phased)
+
+```
+/work → SM → TEA → Dev → Reviewer → SM (finish)
+         │     │     │       │
+      setup  tests  impl   review
+```
+
+| Agent | Role | Phase |
+|-------|------|-------|
+| **SM** | Scrum Master | Story selection, session setup, completion |
+| **TEA** | Test Engineer | Write failing tests (RED) |
+| **Dev** | Developer | Make tests pass (GREEN) |
+| **Reviewer** | Code Reviewer | Quality validation, approve/reject |
+
+Use `/workflow list` to see all 19 workflows. Use `/workflow start <name>` to begin any workflow.
+
+## Benchmarking & Personality Research
+
+Pennyfarthing includes a scientific benchmarking system for evaluating how personality affects agent performance:
+
+```bash
+# Run a single agent on a scenario
+/solo theme:agent --scenario cache-invalidation
+
+# Create a control baseline (10 runs)
+/benchmark-control reviewer --scenario order-service
+
+# Compare persona vs control with statistics
+/benchmark breaking-bad reviewer --scenario order-service
+```
+
+**Key Findings:**
+- Cohen's d effect sizes measure performance differences
+- Multivariate OCEAN patterns predict better than individual traits
+- Character expertise often trumps abstract personality scores
+- The "Stoic Analyst" profile (Low O + High C + Low E + Low N) excels at code review
+
+See [Benchmarking Documentation](docs/BENCHMARKING.md) for methodology.
+
+## CLI Commands
+
+| Command | Description |
+|---------|-------------|
+| `pennyfarthing init` | Initialize in a project |
+| `pennyfarthing update` | Update to latest version |
+| `pennyfarthing doctor` | Check installation health |
+| `pennyfarthing doctor --fix` | Auto-fix common issues |
+| `pennyfarthing uninstall` | Remove for clean reinstall |
+| `pennyfarthing theme list` | Show available themes |
+| `pennyfarthing theme set <name>` | Change active theme |
+
+## Documentation
+
+| Document | Description |
+|----------|-------------|
+| [**User Guide**](docs/USER-GUIDE.md) | Complete documentation |
+| [Getting Started](docs/GETTING-STARTED.md) | Quick start guide |
+| [Workflow Diagrams](docs/WORKFLOW-DIAGRAMS.md) | Visual Mermaid diagrams for all workflows |
+| [BikeLane](docs/BIKELANE.md) | Workflow system architecture |
+| [Agents](docs/AGENTS.md) | Agent reference |
+| [Commands](docs/COMMANDS.md) | Slash command reference |
+| [Benchmarking](docs/BENCHMARKING.md) | Scientific persona evaluation |
+| [Jira Integration](docs/JIRA-INTEGRATION.md) | Jira CLI and sprint sync |
+| [Cyclist](docs/CYCLIST.md) | Visual terminal documentation |
+
+## Available Themes (102)
+
+| Category | Themes |
+|----------|--------|
+| **Sci-Fi TV** | `the-expanse`, `star-trek-tng`, `firefly`, `battlestar-galactica`, `doctor-who` |
+| **Sci-Fi Film** | `star-wars`, `dune`, `blade-runner`, `the-matrix`, `alien` |
+| **Fantasy** | `game-of-thrones`, `lord-of-the-rings`, `discworld`, `sandman`, `arthurian-mythos` |
+| **Drama** | `breaking-bad`, `the-wire`, `succession`, `mad-men`, `fargo` |
+| **Comedy** | `the-office`, `parks-and-rec`, `ted-lasso`, `the-good-place` |
+| **Literary** | `shakespeare`, `jane-austen`, `sherlock-holmes`, `hitchhikers-guide` |
+| **Games** | `mass-effect`, `portal`, `baldurs-gate`, `disco-elysium` |
+
+All themes include OCEAN (Big Five) personality profiles. See [Theme Comparison](docs/THEME-COMPARISON.md) for personality analysis.
+
+Configure in `.pennyfarthing/config.local.yaml`:
+```yaml
+theme: the-expanse
+```
+
+## Directory Structure
+
+After initialization:
+
+```
+your-project/
+├── .claude/
+│   ├── commands/             # → symlinks to @pennyfarthing/core
+│   ├── skills/               # → symlinks to @pennyfarthing/core
+│   └── project/              # Your customizations
+├── .pennyfarthing/
+│   ├── agents/               # → symlink to @pennyfarthing/core
+│   ├── workflows/            # → symlink to @pennyfarthing/core
+│   ├── sidecars/             # Agent learning files
+│   └── config.local.yaml     # Theme selection
+├── sprint/
+│   ├── current-sprint.yaml   # Active sprint
+│   └── archive/              # Completed sessions
+└── .session/
+    └── {story-id}-session.md # Active work session
+```
+
+## What's New in v7.6
+
+- **BikeLane Workflow System** - Unified umbrella for Phased, Stepped, and Procedural workflows
+- **BMAD 6.0 Compatibility** - Full import support for BMAD workflows with tri-modal execution
+- **19 Workflows** - Expanded from TDD-only to comprehensive workflow library
+- **Scientific Benchmarking** - TRAIL-OCEAN hypothesis testing framework
+- **JobFair** - Cross-role performance discovery system
+
+See [CHANGELOG.md](CHANGELOG.md) for full details.
+
+---
+
+## License
+
+Copyright 2025-2026 1898 & Co. All rights reserved.

package/package.json

@@ -1,47 +1,43 @@
 {
   "name": "@pennyfarthing/core",
-  "version": "7.9.5",
+  "version": "8.0.1",
   "description": "Claude Code agent framework with TDD workflow and persona system",
   "type": "module",
-  "keywords": [
-    "claude",
-    "claude-code",
-    "agents",
-    "ai",
-    "tdd",
-    "workflow",
-    "anthropic"
+  "bin": {
+    "pennyfarthing": "./packages/core/bin/pennyfarthing.js"
+  },
+  "files": [
+    "packages/core/bin/",
+    "packages/core/dist/",
+    "pennyfarthing-dist/agents/",
+    "pennyfarthing-dist/commands/",
+    "pennyfarthing-dist/guides/",
+    "pennyfarthing-dist/output-styles/",
+    "pennyfarthing-dist/personas/themes/",
+    "pennyfarthing-dist/scripts/",
+    "pennyfarthing-dist/skills/",
+    "pennyfarthing-dist/templates/",
+    "pennyfarthing-dist/workflows/",
+    "pennyfarthing_scripts/",
+    "README.md"
   ],
-  "license": "UNLICENSED",
-  "author": "1898andCo",
   "repository": {
     "type": "git",
-    "url": "https://github.com/1898andCo/pennyfarthing.git",
-    "directory": "packages/core"
+    "url": "https://github.com/1898andCo/pennyfarthing.git"
   },
   "homepage": "https://github.com/1898andCo/pennyfarthing#readme",
   "bugs": {
     "url": "https://github.com/1898andCo/pennyfarthing/issues"
   },
-  "bin": {
-    "pennyfarthing": "./bin/pennyfarthing.js"
-  },
-  "main": "dist/index.js",
-  "types": "dist/index.d.ts",
-  "files": [
-    "dist/",
-    "bin/",
-    "pennyfarthing-dist/"
-  ],
   "scripts": {
-    "build": "tsc",
-    "dev": "tsc --watch",
-    "test": "node --test dist/**/*.test.js",
-    "lint": "eslint src/",
-    "clean": "rm -rf dist/"
+    "build": "pnpm --filter @pennyfarthing/shared build && pnpm --filter @pennyfarthing/core build && pnpm --filter @pennyfarthing/cyclist build && ./scripts/utils/generate-skill-docs.sh",
+    "docs": "./scripts/utils/generate-skill-docs.sh",
+    "dev": "pnpm -r --parallel dev",
+    "test": "pnpm -r test",
+    "lint": "eslint 'packages/*/src/**/*.ts' --max-warnings 0",
+    "clean": "pnpm -r clean"
   },
   "dependencies": {
-    "@pennyfarthing/shared": "^7.9.0",
     "chalk": "^5.3.0",
     "commander": "^12.1.0",
     "fs-extra": "^11.2.0",
@@ -50,15 +46,14 @@
     "yaml": "^2.3.4"
   },
   "devDependencies": {
-    "@types/fs-extra": "^11.0.4",
-    "@types/inquirer": "^9.0.7",
-    "@types/node": "^20.10.0",
-    "typescript": "^5.3.3"
-  },
-  "publishConfig": {
-    "access": "public"
+    "@eslint/js": "^9.39.2",
+    "eslint": "^9.39.2",
+    "globals": "^17.0.0",
+    "typescript": "^5.3.3",
+    "typescript-eslint": "^8.53.0"
   },
   "engines": {
     "node": ">=18.0.0"
-  }
+  },
+  "packageManager": "pnpm@9.0.0"
 }

package/{dist → packages/core/dist}/cli/utils/files.d.ts

@@ -61,8 +61,12 @@ export declare function getDirectoryHashes(dirPath: string): Record<string, stri
 /**
  * Find the project root by walking up from a starting directory.
  *
- * Looks for .pennyfarthing/ directory as the primary marker - this exists in any
- * project using Pennyfarthing (created by `pennyfarthing init`).
+ * Checks for markers in priority order:
+ * 1. pennyfarthing-dist/ + packages/ together - Framework source repo (unique combination)
+ * 2. .pennyfarthing/ - Consumer project (created by `pennyfarthing init`)
+ *
+ * The first check uses BOTH markers because an orchestrator might have pennyfarthing-dist/
+ * via symlink, but only the actual pennyfarthing repo has both pennyfarthing-dist/ AND packages/.
  *
  * @param startDir - Starting directory (defaults to __dirname equivalent)
  * @returns Absolute path to project root

package/{dist → packages/core/dist}/cli/utils/files.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"files.d.ts","sourceRoot":"","sources":["../../../src/cli/utils/files.ts"],"names":[],"mappings":"AAOA;;GAEG;AACH,wBAAgB,QAAQ,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAGjD;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAElD;AAED;;GAEG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAM/C;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAEhD;AAED;;GAEG;AACH,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAMjD;AAED;;GAEG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,CA0BxE;AAED;;GAEG;AACH,wBAAgB,aAAa,CAC3B,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,MAAM,EACZ,OAAO,CAAC,EAAE;IAAE,MAAM,CAAC,EAAE,OAAO,CAAA;CAAE,GAC7B,MAAM,EAAE,CASV;AAED;;GAEG;AACH,wBAAgB,QAAQ,CACtB,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,MAAM,EACZ,OAAO,CAAC,EAAE;IAAE,MAAM,CAAC,EAAE,OAAO,CAAA;CAAE,GAC7B,IAAI,CAKN;AAED;;GAEG;AACH,wBAAgB,MAAM,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE;IAAE,MAAM,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,IAAI,CAIzE;AAED;;GAEG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE;IAAE,MAAM,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,IAAI,CAI5E;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAKhE;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,OAAO,CAK/E;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAU1E;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAsBzD"}

package/{dist → packages/core/dist}/cli/utils/files.js

@@ -138,8 +138,12 @@ export function getDirectoryHashes(dirPath) {
 /**
  * Find the project root by walking up from a starting directory.
  *
- * Looks for .pennyfarthing/ directory as the primary marker - this exists in any
- * project using Pennyfarthing (created by `pennyfarthing init`).
+ * Checks for markers in priority order:
+ * 1. pennyfarthing-dist/ + packages/ together - Framework source repo (unique combination)
+ * 2. .pennyfarthing/ - Consumer project (created by `pennyfarthing init`)
+ *
+ * The first check uses BOTH markers because an orchestrator might have pennyfarthing-dist/
+ * via symlink, but only the actual pennyfarthing repo has both pennyfarthing-dist/ AND packages/.
  *
  * @param startDir - Starting directory (defaults to __dirname equivalent)
  * @returns Absolute path to project root
@@ -148,7 +152,11 @@ export function getDirectoryHashes(dirPath) {
 export function findMonorepoRoot(startDir) {
     let dir = startDir;
     for (let i = 0; i < 10; i++) {
-        // Primary marker: .pennyfarthing/ directory (created by pennyfarthing init)
+        // Primary marker: pennyfarthing-dist/ + packages/ together (framework source repo only)
+        if (existsSync(join(dir, 'pennyfarthing-dist')) && existsSync(join(dir, 'packages'))) {
+            return dir;
+        }
+        // Secondary marker: .pennyfarthing/ directory (consumer project)
         if (existsSync(join(dir, '.pennyfarthing'))) {
             return dir;
         }
@@ -159,6 +167,6 @@ export function findMonorepoRoot(startDir) {
         }
         dir = parent;
     }
-    throw new Error(`Could not find project root (.pennyfarthing/) starting from ${startDir}`);
+    throw new Error(`Could not find project root (pennyfarthing-dist/+packages/ or .pennyfarthing/) starting from ${startDir}`);
 }
 //# sourceMappingURL=files.js.map

package/{dist → packages/core/dist}/cli/utils/files.js.map

@@ -1 +1 @@
-{"version":3,"file":"files.js","sourceRoot":"","sources":["../../../src/cli/utils/files.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,QAAQ,CAAC;AACpC,OAAO,EAAE,YAAY,EAAE,UAAU,EAAE,QAAQ,EAAE,WAAW,EAAE,SAAS,EAAE,MAAM,IAAI,CAAC;AAChF,OAAO,OAAO,MAAM,UAAU,CAAC;AAC/B,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAE/C,MAAM,EAAE,QAAQ,EAAE,aAAa,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC;AAExD;;GAEG;AACH,MAAM,UAAU,QAAQ,CAAC,QAAgB;IACvC,MAAM,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAAC;IACvC,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AAC5D,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,OAAe;IACxC,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AAC5D,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,SAAS,CAAC,IAAY;IACpC,IAAI,CAAC;QACH,OAAO,SAAS,CAAC,IAAI,CAAC,CAAC,cAAc,EAAE,CAAC;IAC1C,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,IAAY;IACrC,OAAO,UAAU,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,IAAY;IACtC,IAAI,CAAC;QACH,OAAO,QAAQ,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,CAAC;IACtC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,OAAe,EAAE,QAAiB;IAC5D,MAAM,IAAI,GAAG,QAAQ,IAAI,OAAO,CAAC;IACjC,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QACzB,OAAO,KAAK,CAAC;IACf,CAAC;IAED,MAAM,OAAO,GAAG,WAAW,CAAC,OAAO,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IAE9D,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;QAC5B,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;QAE3C,6DAA6D;QAC7D,IAAI,KAAK,CAAC,cAAc,EAAE,EAAE,CAAC;YAC3B,SAAS;QACX,CAAC;QAED,IAAI,KAAK,CAAC,WAAW,EAAE,EAAE,CAAC;YACxB,KAAK,CAAC,IAAI,CAAC,GAAG,WAAW,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC,CAAC;QAC7C,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC,CAAC;QACvC,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,aAAa,CAC3B,MAAc,EACd,IAAY,EACZ,OAA8B;IAE9B,MAAM,KAAK,GAAG,WAAW,CAAC,MAAM,CAAC,CAAC;IAElC,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QACrB,aAAa,CAAC,IAAI,CAAC,CAAC;QACpB,QAAQ,CAAC,MAAM,EAAE,IAAI,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC9C,CAAC;IAED,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;AACvC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,QAAQ,CACtB,MAAc,EACd,IAAY,EACZ,OAA8B;IAE9B,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QACrB,aAAa,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;QAC7B,QAAQ,CAAC,MAAM,EAAE,IAAI,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC9C,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,MAAM,CAAC,IAAY,EAAE,OAA8B;IACjE,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QACrB,UAAU,CAAC,IAAI,CAAC,CAAC;IACnB,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,SAAS,CAAC,IAAY,EAAE,OAA8B;IACpE,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QACrB,aAAa,CAAC,IAAI,CAAC,CAAC;IACtB,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,KAAa,EAAE,KAAa;IACrD,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,EAAE,CAAC;QAC7C,OAAO,KAAK,CAAC;IACf,CAAC;IACD,OAAO,QAAQ,CAAC,KAAK,CAAC,KAAK,QAAQ,CAAC,KAAK,CAAC,CAAC;AAC7C,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,eAAe,CAAC,QAAgB,EAAE,YAAoB;IACpE,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;QAC1B,OAAO,KAAK,CAAC;IACf,CAAC;IACD,OAAO,QAAQ,CAAC,QAAQ,CAAC,KAAK,YAAY,CAAC;AAC7C,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,kBAAkB,CAAC,OAAe;IAChD,MAAM,KAAK,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC;IACnC,MAAM,MAAM,GAA2B,EAAE,CAAC;IAE1C,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QACrC,MAAM,CAAC,IAAI,CAAC,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC;IACpC,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,UAAU,gBAAgB,CAAC,QAAgB;IAC/C,IAAI,GAAG,GAAG,QAAQ,CAAC;IAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;QAC5B,4EAA4E;QAC5E,IAAI,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,gBAAgB,CAAC,CAAC,EAAE,CAAC;YAC5C,OAAO,GAAG,CAAC;QACb,CAAC;QAED,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;QAC5B,IAAI,MAAM,KAAK,GAAG,EAAE,CAAC;YACnB,0BAA0B;YAC1B,MAAM;QACR,CAAC;QACD,GAAG,GAAG,MAAM,CAAC;IACf,CAAC;IAED,MAAM,IAAI,KAAK,CAAC,+DAA+D,QAAQ,EAAE,CAAC,CAAC;AAC7F,CAAC"}
+{"version":3,"file":"files.js","sourceRoot":"","sources":["../../../src/cli/utils/files.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,QAAQ,CAAC;AACpC,OAAO,EAAE,YAAY,EAAE,UAAU,EAAE,QAAQ,EAAE,WAAW,EAAE,SAAS,EAAE,MAAM,IAAI,CAAC;AAChF,OAAO,OAAO,MAAM,UAAU,CAAC;AAC/B,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAE/C,MAAM,EAAE,QAAQ,EAAE,aAAa,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC;AAExD;;GAEG;AACH,MAAM,UAAU,QAAQ,CAAC,QAAgB;IACvC,MAAM,OAAO,GAAG,YAAY,CAAC,QAAQ,CAAC,CAAC;IACvC,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AAC5D,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,OAAe;IACxC,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AAC5D,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,SAAS,CAAC,IAAY;IACpC,IAAI,CAAC;QACH,OAAO,SAAS,CAAC,IAAI,CAAC,CAAC,cAAc,EAAE,CAAC;IAC1C,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,IAAY;IACrC,OAAO,UAAU,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,IAAY;IACtC,IAAI,CAAC;QACH,OAAO,QAAQ,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,CAAC;IACtC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,OAAe,EAAE,QAAiB;IAC5D,MAAM,IAAI,GAAG,QAAQ,IAAI,OAAO,CAAC;IACjC,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QACzB,OAAO,KAAK,CAAC;IACf,CAAC;IAED,MAAM,OAAO,GAAG,WAAW,CAAC,OAAO,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IAE9D,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;QAC5B,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;QAE3C,6DAA6D;QAC7D,IAAI,KAAK,CAAC,cAAc,EAAE,EAAE,CAAC;YAC3B,SAAS;QACX,CAAC;QAED,IAAI,KAAK,CAAC,WAAW,EAAE,EAAE,CAAC;YACxB,KAAK,CAAC,IAAI,CAAC,GAAG,WAAW,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC,CAAC;QAC7C,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC,CAAC;QACvC,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,aAAa,CAC3B,MAAc,EACd,IAAY,EACZ,OAA8B;IAE9B,MAAM,KAAK,GAAG,WAAW,CAAC,MAAM,CAAC,CAAC;IAElC,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QACrB,aAAa,CAAC,IAAI,CAAC,CAAC;QACpB,QAAQ,CAAC,MAAM,EAAE,IAAI,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC9C,CAAC;IAED,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;AACvC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,QAAQ,CACtB,MAAc,EACd,IAAY,EACZ,OAA8B;IAE9B,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QACrB,aAAa,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;QAC7B,QAAQ,CAAC,MAAM,EAAE,IAAI,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC9C,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,MAAM,CAAC,IAAY,EAAE,OAA8B;IACjE,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QACrB,UAAU,CAAC,IAAI,CAAC,CAAC;IACnB,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,SAAS,CAAC,IAAY,EAAE,OAA8B;IACpE,IAAI,CAAC,OAAO,EAAE,MAAM,EAAE,CAAC;QACrB,aAAa,CAAC,IAAI,CAAC,CAAC;IACtB,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,KAAa,EAAE,KAAa;IACrD,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,EAAE,CAAC;QAC7C,OAAO,KAAK,CAAC;IACf,CAAC;IACD,OAAO,QAAQ,CAAC,KAAK,CAAC,KAAK,QAAQ,CAAC,KAAK,CAAC,CAAC;AAC7C,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,eAAe,CAAC,QAAgB,EAAE,YAAoB;IACpE,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;QAC1B,OAAO,KAAK,CAAC;IACf,CAAC;IACD,OAAO,QAAQ,CAAC,QAAQ,CAAC,KAAK,YAAY,CAAC;AAC7C,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,kBAAkB,CAAC,OAAe;IAChD,MAAM,KAAK,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC;IACnC,MAAM,MAAM,GAA2B,EAAE,CAAC;IAE1C,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QACrC,MAAM,CAAC,IAAI,CAAC,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC;IACpC,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;;;;;;;GAaG;AACH,MAAM,UAAU,gBAAgB,CAAC,QAAgB;IAC/C,IAAI,GAAG,GAAG,QAAQ,CAAC;IAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;QAC5B,wFAAwF;QACxF,IAAI,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,oBAAoB,CAAC,CAAC,IAAI,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,CAAC,CAAC,EAAE,CAAC;YACrF,OAAO,GAAG,CAAC;QACb,CAAC;QACD,iEAAiE;QACjE,IAAI,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,gBAAgB,CAAC,CAAC,EAAE,CAAC;YAC5C,OAAO,GAAG,CAAC;QACb,CAAC;QAED,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;QAC5B,IAAI,MAAM,KAAK,GAAG,EAAE,CAAC;YACnB,0BAA0B;YAC1B,MAAM;QACR,CAAC;QACD,GAAG,GAAG,MAAM,CAAC;IACf,CAAC;IAED,MAAM,IAAI,KAAK,CAAC,gGAAgG,QAAQ,EAAE,CAAC,CAAC;AAC9H,CAAC"}

package/{dist → packages/core/dist}/cli/workspace.test.js

@@ -141,7 +141,9 @@ describe('Story 11-2: pnpm Workspace Structure', () => {
             const pkg = JSON.parse(readFileSync(packageJsonPath, 'utf-8'));
             const deps = pkg.dependencies || {};
             assert.ok(deps['@pennyfarthing/shared'], 'packages/core should depend on @pennyfarthing/shared');
-            assert.ok(deps['@pennyfarthing/shared'].includes('workspace'), 'Dependency should use workspace protocol (workspace:*)');
+            // Accept either workspace protocol (development) or version (for npm publish)
+            const sharedDep = deps['@pennyfarthing/shared'];
+            assert.ok(sharedDep.includes('workspace') || sharedDep.match(/^\^?\d+\.\d+\.\d+/), 'Dependency should use workspace protocol or semver version');
         });
     });
     describe('Root package.json', () => {

package/{dist → packages/core/dist}/cli/workspace.test.js.map

@@ -1 +1 @@
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package/pennyfarthing-dist/agents/README.md

@@ -213,39 +213,39 @@ Reviewer → Dev:  Changes requested
 
 ## Path Standards
 
-**IMPORTANT:** Use relative paths from project root or the `run.sh` wrapper for script execution.
+**IMPORTANT:** Scripts self-locate via `BASH_SOURCE`. Use direct script invocation.
 
 ### Standard Pattern
 ```bash
-# ✅ CORRECT - Use run.sh wrapper (handles path resolution)
-.pennyfarthing/scripts/core/run.sh core/agent-session.sh start "Agent Name"
+# ✅ CORRECT - Direct script invocation (scripts self-locate via BASH_SOURCE)
+.pennyfarthing/scripts/core/agent-session.sh start "Agent Name"
 
 # ✅ CORRECT - Relative paths for files (Claude starts in project root)
 .session/{STORY_ID}-session.md
 
 # ✅ CORRECT - Commands use climber pattern to find project root
 d="$PWD"; while [[ ! -d "$d/.pennyfarthing" ]] && [[ "$d" != "/" ]]; do d="$(dirname "$d")"; done
-"$d/.pennyfarthing/scripts/core/run.sh" core/agent-session.sh start "sm"
+"$d/.pennyfarthing/scripts/core/agent-session.sh" start "sm"
 
 # ❌ WRONG - $CLAUDE_PROJECT_DIR doesn't exist in Claude Bash calls
-$CLAUDE_PROJECT_DIR/scripts/run.sh core/agent-session.sh  # BROKEN!
+$CLAUDE_PROJECT_DIR/.pennyfarthing/scripts/core/agent-session.sh  # BROKEN!
 
 # ❌ WRONG - Don't hardcode absolute paths
-/Users/someone/project/scripts/run.sh core/agent-session.sh
+/Users/someone/project/.pennyfarthing/scripts/core/agent-session.sh
 ```
 
 ### Why Relative Paths?
 - `$CLAUDE_PROJECT_DIR` is available in hooks but NOT in Claude's Bash tool calls
-- `run.sh` internally finds project root via `.pennyfarthing/` marker
+- Scripts self-locate via `BASH_SOURCE` and `find-root.sh`
 - Claude Code always starts in the project root directory
 - The climber pattern handles subdirectory execution if needed
 
 ### Path Context
-| Context | `$CLAUDE_PROJECT_DIR` | Relative Paths | run.sh |
-|---------|----------------------|----------------|--------|
-| Hooks (settings.json) | ✅ Available | ✅ Works | ✅ Works |
-| Claude Bash calls | ❌ Not set | ✅ Works | ✅ Works |
-| Scripts (via run.sh) | ❌ Use `$PROJECT_ROOT` | ✅ Works | - |
+| Context | `$CLAUDE_PROJECT_DIR` | Relative Paths |
+|---------|----------------------|----------------|
+| Hooks (settings.json) | ✅ Available | ✅ Works |
+| Claude Bash calls | ❌ Not set | ✅ Works |
+| Inside scripts | ❌ Use `$PROJECT_ROOT` | ✅ Works |
 
 ## Background Subagent Execution
 

package/pennyfarthing-dist/agents/architect.md

@@ -176,5 +176,5 @@ Task tool:
 <exit>
 To exit: "Exit Architect" or switch to another agent.
 
-On exit, run: `./scripts/run.sh core/agent-session.sh stop`
+On exit, run: `./.pennyfarthing/scripts/core/agent-session.sh stop`
 </exit>

package/pennyfarthing-dist/agents/dev.md

@@ -59,7 +59,7 @@ PR_NUMBER: "{PR_NUMBER}"
 
 Read `**Workflow:**` and `**Phase:**` from session. Query:
 ```bash
-OWNER=$(.pennyfarthing/scripts/core/run.sh workflow/phase-owner.sh {workflow} {phase})
+OWNER=$(.pennyfarthing/scripts/workflow/phase-owner.sh {workflow} {phase})
 ```
 
 **If OWNER != "dev":** Run `handoff-marker.sh $OWNER`, output result, tell user.
@@ -153,7 +153,7 @@ Write to session file BEFORE spawning handoff:
 3. Await `HANDOFF_RESULT` with `next_agent`
 4. **ABSOLUTE LAST ACTION:**
    ```bash
-   .pennyfarthing/scripts/core/handoff-marker.sh {next_agent}
+   .pennyfarthing/scripts/handoff/handoff-marker.sh {next_agent}
    ```
 5. Output result verbatim and EXIT
 </exit-sequence>

package/pennyfarthing-dist/agents/devops.md

@@ -199,5 +199,5 @@ Task tool:
 <exit>
 To exit: "Exit DevOps" or switch to another agent.
 
-On exit, run: `./scripts/run.sh core/agent-session.sh stop`
+On exit, run: `./.pennyfarthing/scripts/core/agent-session.sh stop`
 </exit>

package/pennyfarthing-dist/agents/handoff.md

@@ -39,7 +39,7 @@ Return `HANDOFF_RESULT` with the next agent name - the calling agent runs `hando
 
 <gate>
 ### tests_pass (Dev → Reviewer)
-- [ ] Quality checks pass (run: `.pennyfarthing/scripts/run.sh workflow/check.sh`)
+- [ ] Quality checks pass (run: `.pennyfarthing/scripts/workflow/check.sh`)
 - [ ] Git working tree clean
 - [ ] Changes pushed to remote
 - [ ] PR exists and is open
@@ -229,7 +229,7 @@ When you receive `HANDOFF_RESULT`:
 **CRITICAL: The calling agent MUST run this as their ABSOLUTE LAST ACTION:**
 
 ```bash
-.pennyfarthing/scripts/core/handoff-marker.sh {next_agent}
+.pennyfarthing/scripts/handoff/handoff-marker.sh {next_agent}
 ```
 
 Then output the script's result verbatim and EXIT. Nothing else after.

package/pennyfarthing-dist/agents/pm.md

@@ -148,5 +148,5 @@ REFLECT: Recommend completing Epic 38 batch before starting new epics. P1 bugs f
 <exit>
 To exit: "Exit PM" or switch to another agent.
 
-On exit, run: `./scripts/run.sh core/agent-session.sh stop`
+On exit, run: `./.pennyfarthing/scripts/core/agent-session.sh stop`
 </exit>

package/pennyfarthing-dist/agents/reviewer.md

@@ -72,7 +72,7 @@ ASSESSMENT_SECTION: "Reviewer Assessment"
 
 Read `**Workflow:**` and `**Phase:**` from session. Query:
 ```bash
-OWNER=$(.pennyfarthing/scripts/core/run.sh workflow/phase-owner.sh {workflow} {phase})
+OWNER=$(.pennyfarthing/scripts/workflow/phase-owner.sh {workflow} {phase})
 ```
 
 **If OWNER != "reviewer":** Run `handoff-marker.sh $OWNER`, output result, tell user.
@@ -163,7 +163,7 @@ OWNER=$(.pennyfarthing/scripts/core/run.sh workflow/phase-owner.sh {workflow} {p
 3. Await `HANDOFF_RESULT` with `next_agent`
 4. **ABSOLUTE LAST ACTION:**
    ```bash
-   .pennyfarthing/scripts/core/handoff-marker.sh {next_agent}
+   .pennyfarthing/scripts/handoff/handoff-marker.sh {next_agent}
    ```
 5. Output result verbatim and EXIT
 

package/pennyfarthing-dist/agents/sm-setup.md

@@ -26,7 +26,7 @@ model: haiku
 
 - [ ] Use `/sprint backlog` for initial backlog scan:
   ```bash
-  .pennyfarthing/scripts/core/run.sh sprint/available-stories.sh
+  .pennyfarthing/scripts/sprint/available-stories.sh
   ```
 - [ ] Use `/jira` skill to enrich with Jira status/assignee:
   - `/jira search "project=MSSCI AND sprint in openSprints()"` - Get all sprint stories
@@ -92,7 +92,7 @@ Other formats break Cyclist detection.
 EPIC_NUM=$(echo "{STORY_ID}" | cut -d'-' -f1)
 
 # Get epic's Jira key (use script, not direct yq)
-EPIC_JIRA=$(.pennyfarthing/scripts/core/run.sh sprint/get-epic-field.sh "$EPIC_NUM" jira)
+EPIC_JIRA=$(.pennyfarthing/scripts/sprint/get-epic-field.sh "$EPIC_NUM" jira)
 ```
 
 If missing or "null": auto-create via `jira-epic-creation.ts`
@@ -139,10 +139,10 @@ Use `/jira claim` command:
 
 ```bash
 # Check availability first
-.pennyfarthing/scripts/core/run.sh jira/jira-claim-story.sh {JIRA_KEY}
+.pennyfarthing/scripts/jira/jira-claim-story.sh {JIRA_KEY}
 
 # Then claim (assign to self + move to In Progress)
-.pennyfarthing/scripts/core/run.sh jira/jira-claim-story.sh {JIRA_KEY} --claim
+.pennyfarthing/scripts/jira/jira-claim-story.sh {JIRA_KEY} --claim
 ```
 
 **Exit codes:**
@@ -184,7 +184,7 @@ git checkout -b feat/{STORY_ID}-{SLUG}
 After session file is created, determine how to route:
 
 ```bash
-WORKFLOW_TYPE=$(.pennyfarthing/scripts/core/run.sh workflow/get-workflow-type.sh "{WORKFLOW}")
+WORKFLOW_TYPE=$(.pennyfarthing/scripts/workflow/get-workflow-type.sh "{WORKFLOW}")
 ```
 
 | Workflow Type | Routing |