@pencil-agent/nano-pencil 2.0.0-beta.9 → 2.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (207) hide show
  1. package/README.md +267 -267
  2. package/dist/build-meta.json +3 -3
  3. package/dist/core/export-html/AGENT.md +11 -11
  4. package/dist/core/export-html/template.css +971 -971
  5. package/dist/core/export-html/template.html +54 -54
  6. package/dist/core/extensions-host/index.d.ts +1 -1
  7. package/dist/core/extensions-host/types.d.ts +5 -8
  8. package/dist/extensions/builtin/AGENT.md +115 -115
  9. package/dist/extensions/builtin/browser/AGENT.md +17 -17
  10. package/dist/extensions/builtin/browser/agent-workspace/agent_helpers.py +12 -12
  11. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/amazon/product-search.md +198 -198
  12. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/archive-org/scraping.md +341 -341
  13. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/arxiv/scraping.md +311 -311
  14. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/arxiv-bulk/scraping.md +333 -333
  15. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/atlas/overview.md +70 -70
  16. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/booking-com/scraping.md +578 -578
  17. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/capterra/scraping.md +440 -440
  18. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/centilebrain/generate-estimates.md +110 -110
  19. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/coingecko/scraping.md +325 -325
  20. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/coinmarketcap/scraping.md +463 -463
  21. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/coursera/scraping.md +360 -360
  22. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/craigslist/scraping.md +390 -390
  23. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/crossref/scraping.md +568 -568
  24. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/dev-to/scraping.md +323 -323
  25. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/duckduckgo/scraping.md +349 -349
  26. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/ebay/scraping.md +435 -435
  27. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/etsy/scraping.md +506 -506
  28. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/eventbrite/scraping.md +363 -363
  29. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/expedia/automation.md +168 -168
  30. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/facebook/groups.md +236 -236
  31. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/facebook/pages.md +295 -295
  32. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/framer/editor.md +108 -108
  33. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/fred/scraping.md +493 -493
  34. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/g2/scraping.md +580 -580
  35. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/genius/scraping.md +511 -511
  36. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/github/repo-actions.md +65 -65
  37. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/github/scraping.md +184 -184
  38. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/glassdoor/scraping.md +543 -543
  39. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/gmail/compose.md +122 -122
  40. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/goodreads/scraping.md +461 -461
  41. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/gutenberg/scraping.md +383 -383
  42. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/hackernews/scraping.md +243 -243
  43. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/howlongtobeat/scraping.md +473 -473
  44. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/imdb/scraping.md +271 -271
  45. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/itch-io/scraping.md +436 -436
  46. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/job-boards/indeed-glassdoor.md +1021 -1021
  47. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/letterboxd/scraping.md +349 -349
  48. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/linkedin/invitation-manager.md +109 -109
  49. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/loom/folder-enumeration.md +170 -170
  50. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/macrotrends/scraping.md +537 -537
  51. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/medium/article-hydration.md +120 -120
  52. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/medium/scraping.md +414 -414
  53. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/metacritic/scraping.md +477 -477
  54. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/musicbrainz/scraping.md +478 -478
  55. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/nasa/scraping.md +339 -339
  56. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/news-aggregation/multi-source.md +205 -205
  57. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/open-library/scraping.md +472 -472
  58. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/openalex/scraping.md +470 -470
  59. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/openstreetmap/scraping.md +490 -490
  60. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/package-registries/npm-pypi.md +478 -478
  61. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/polymarket/scraping.md +234 -234
  62. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/producthunt/scraping.md +307 -307
  63. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/pubmed/scraping.md +421 -421
  64. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/quora/scraping.md +364 -364
  65. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/rawg/scraping.md +352 -352
  66. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/reddit/scraping.md +124 -124
  67. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/rest-countries/scraping.md +233 -233
  68. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/sec-edgar/scraping.md +361 -361
  69. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/shopify-admin/README.md +36 -36
  70. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/shopify-admin/embedded-apps.md +72 -72
  71. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/shopify-admin/knowledge-base.md +109 -109
  72. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/shopify-admin/polaris-inputs.md +137 -137
  73. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/soundcloud/scraping.md +362 -362
  74. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/spotify/scraping.md +339 -339
  75. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/stackoverflow/scraping.md +435 -435
  76. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/steam/scraping.md +575 -575
  77. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/substack/scraping.md +338 -338
  78. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/thetechgeeks/pricing.md +52 -52
  79. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/tiktok/upload.md +107 -107
  80. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/tradingview/scraping.md +309 -309
  81. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/trello/boards-and-lists.md +88 -88
  82. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/trustpilot/scraping.md +375 -375
  83. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/walmart/scraping.md +444 -444
  84. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/wayback-machine/scraping.md +306 -306
  85. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/weather/scraping.md +398 -398
  86. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/wellfound/scraping.md +596 -596
  87. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/world-bank/scraping.md +356 -356
  88. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/xiaohongshu/scraping.md +84 -84
  89. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/youtube/scraping.md +418 -418
  90. package/dist/extensions/builtin/browser/agent-workspace/domain-skills/zillow/scraping.md +433 -433
  91. package/dist/extensions/builtin/browser/browser.md +73 -73
  92. package/dist/extensions/builtin/browser/install.md +142 -142
  93. package/dist/extensions/builtin/browser/interaction-skills/connection.md +48 -48
  94. package/dist/extensions/builtin/browser/interaction-skills/cookies.md +3 -3
  95. package/dist/extensions/builtin/browser/interaction-skills/cross-origin-iframes.md +3 -3
  96. package/dist/extensions/builtin/browser/interaction-skills/dialogs.md +64 -64
  97. package/dist/extensions/builtin/browser/interaction-skills/downloads.md +3 -3
  98. package/dist/extensions/builtin/browser/interaction-skills/drag-and-drop.md +3 -3
  99. package/dist/extensions/builtin/browser/interaction-skills/dropdowns.md +3 -3
  100. package/dist/extensions/builtin/browser/interaction-skills/iframes.md +3 -3
  101. package/dist/extensions/builtin/browser/interaction-skills/network-requests.md +3 -3
  102. package/dist/extensions/builtin/browser/interaction-skills/print-as-pdf.md +3 -3
  103. package/dist/extensions/builtin/browser/interaction-skills/profile-sync.md +90 -90
  104. package/dist/extensions/builtin/browser/interaction-skills/screenshots.md +17 -17
  105. package/dist/extensions/builtin/browser/interaction-skills/scrolling.md +3 -3
  106. package/dist/extensions/builtin/browser/interaction-skills/shadow-dom.md +3 -3
  107. package/dist/extensions/builtin/browser/interaction-skills/tabs.md +69 -69
  108. package/dist/extensions/builtin/browser/interaction-skills/uploads.md +1 -1
  109. package/dist/extensions/builtin/browser/interaction-skills/viewport.md +3 -3
  110. package/dist/extensions/builtin/browser/src/browser_harness/AGENT.md +15 -15
  111. package/dist/extensions/builtin/browser/src/browser_harness/__init__.py +8 -8
  112. package/dist/extensions/builtin/browser/src/browser_harness/_ipc.py +90 -90
  113. package/dist/extensions/builtin/browser/src/browser_harness/admin.py +722 -722
  114. package/dist/extensions/builtin/browser/src/browser_harness/daemon.py +328 -328
  115. package/dist/extensions/builtin/browser/src/browser_harness/helpers.py +396 -396
  116. package/dist/extensions/builtin/browser/src/browser_harness/run.py +103 -103
  117. package/dist/extensions/builtin/discipline/skills/brainstorming/SKILL.md +33 -33
  118. package/dist/extensions/builtin/discipline/skills/executing-plans/SKILL.md +25 -25
  119. package/dist/extensions/builtin/discipline/skills/finishing-development-branch/SKILL.md +25 -25
  120. package/dist/extensions/builtin/discipline/skills/receiving-code-review/SKILL.md +22 -22
  121. package/dist/extensions/builtin/discipline/skills/requesting-code-review/SKILL.md +31 -31
  122. package/dist/extensions/builtin/discipline/skills/systematic-debugging/SKILL.md +28 -28
  123. package/dist/extensions/builtin/discipline/skills/test-driven-development/SKILL.md +32 -32
  124. package/dist/extensions/builtin/discipline/skills/using-git-worktrees/SKILL.md +25 -25
  125. package/dist/extensions/builtin/discipline/skills/verification-before-completion/SKILL.md +27 -27
  126. package/dist/extensions/builtin/discipline/skills/writing-plans/SKILL.md +26 -26
  127. package/dist/extensions/builtin/goal/README.md +67 -67
  128. package/dist/extensions/builtin/goal/goal-controller.js +1 -1
  129. package/dist/extensions/builtin/goal/goal-prompts.js +4 -4
  130. package/dist/extensions/builtin/grub/README.md +112 -112
  131. package/dist/extensions/builtin/link-world/agent-workspace/README.md +16 -16
  132. package/dist/extensions/builtin/link-world/internet-search/internet-search.md +65 -65
  133. package/dist/extensions/builtin/link-world/link-world-agent.md +82 -82
  134. package/dist/extensions/builtin/link-world/linkworld.md +313 -313
  135. package/dist/extensions/builtin/link-world/network-routing/network-routing.md +67 -67
  136. package/dist/extensions/builtin/loop/README.md +92 -92
  137. package/dist/extensions/builtin/mcp/figma-design.md +68 -68
  138. package/dist/extensions/builtin/mcp/mcp-management.md +85 -85
  139. package/dist/extensions/builtin/recap/AGENT.md +15 -15
  140. package/dist/extensions/builtin/sal/README.md +72 -72
  141. package/dist/extensions/builtin/security-audit/README.md +289 -289
  142. package/dist/extensions/builtin/team/AGENT.md +112 -112
  143. package/dist/extensions/builtin/team/TESTING.md +299 -299
  144. package/dist/extensions/builtin/token-save/README.md +56 -56
  145. package/dist/extensions/optional/AGENT.md +10 -10
  146. package/dist/index.d.ts +5 -30
  147. package/dist/index.js +1 -1
  148. package/dist/models.d.ts +7 -0
  149. package/dist/models.js +1 -0
  150. package/dist/modes/interactive/theme/dark.json +85 -85
  151. package/dist/modes/interactive/theme/light.json +84 -84
  152. package/dist/modes/interactive/theme/theme-schema.json +335 -335
  153. package/dist/modes/interactive/theme/warm.json +81 -81
  154. package/dist/node_modules/@pencil-agent/ai/dist/cli.js +0 -0
  155. package/dist/packages/protocol/src/flags.d.ts +20 -0
  156. package/dist/packages/protocol/src/flags.js +0 -0
  157. package/dist/packages/protocol/src/hooks.d.ts +17 -0
  158. package/dist/packages/protocol/src/hooks.js +0 -0
  159. package/dist/packages/protocol/src/index.d.ts +4 -2
  160. package/dist/packages/protocol/src/index.js +1 -1
  161. package/dist/packages/protocol/src/lifecycle.d.ts +11 -21
  162. package/dist/public-config.d.ts +12 -0
  163. package/dist/public-config.js +1 -0
  164. package/dist/runtime.d.ts +9 -0
  165. package/dist/runtime.js +1 -0
  166. package/dist/session-compaction.d.ts +7 -0
  167. package/dist/session-compaction.js +1 -0
  168. package/dist/session.d.ts +7 -0
  169. package/dist/session.js +1 -0
  170. package/dist/skills.d.ts +7 -0
  171. package/dist/skills.js +1 -0
  172. package/dist/tools.d.ts +7 -0
  173. package/dist/tools.js +1 -0
  174. package/docs/ACP/345/215/217/350/256/256/351/233/206/346/210/220/345/274/200/345/217/221/346/226/207/346/241/243.md +851 -0
  175. package/docs/SDK-TESTING.md +364 -0
  176. package/docs/codex-goal-command-impl.md +1055 -1055
  177. package/docs/codex-goal-vs-grub.md +500 -500
  178. package/docs/custom-provider.md +27 -27
  179. package/docs/extensions.md +27 -27
  180. package/docs/keybindings.md +27 -27
  181. package/docs/loop /351/207/215/346/236/204/345/256/214/346/210/220/346/200/273/347/273/223.md" +250 -250
  182. package/docs/loop /351/207/215/346/236/204/345/256/214/346/210/220/346/212/245/345/221/212.md" +122 -122
  183. package/docs/loop /351/207/215/346/236/204/346/226/271/346/241/210.md" +1222 -1222
  184. package/docs/loop /351/207/215/346/236/204/346/226/271/346/241/210/345/256/236/347/216/260/346/212/245/345/221/212.md" +158 -158
  185. package/docs/loop /351/207/215/346/236/204/346/226/271/346/241/210/345/257/271/346/257/224/345/210/206/346/236/220.md" +128 -128
  186. package/docs/loop /351/207/215/346/236/204/350/256/241/345/210/222.md" +320 -320
  187. package/docs/loop-usage-examples.md +214 -214
  188. package/docs/mem-core/346/212/200/346/234/257/346/226/207/346/241/243.md +593 -0
  189. package/docs/models.md +27 -27
  190. package/docs/packages.md +27 -27
  191. package/docs/pi-design-philosophy.md +457 -457
  192. package/docs/planmode.md +1987 -1987
  193. package/docs/prompt-templates.md +27 -27
  194. package/docs/providers.md +27 -27
  195. package/docs/sdk.md +27 -27
  196. package/docs/skills.md +27 -27
  197. package/docs/startup-performance-optimization.md +301 -0
  198. package/docs/themes.md +27 -27
  199. package/docs/tui.md +27 -27
  200. package/docs//350/256/244/347/237/245/345/234/260/345/233/276.md +47 -0
  201. package/package.json +190 -162
  202. package/docs/cc-agent-design.md +0 -1297
  203. package/docs/cc-tui-design.md +0 -1333
  204. package/docs/nanoPencil-/345/255/246/344/271/240/350/256/241/345/210/222.md +0 -170
  205. package/docs/scan-report.md +0 -3820
  206. package/docs//345/257/271/346/240/207Claude-Code.md +0 -1775
  207. package/docs//351/230/277/351/207/214/345/267/264/345/267/264/350/264/242/346/212/245/345/210/206/346/236/220/344/271/246.md +0 -261
@@ -1,333 +1,333 @@
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- # arXiv Bulk Harvest + Semantic Scholar — OAI-PMH & Citation Enrichment
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-
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- Companion to `domain-skills/arxiv/scraping.md`. Use the **arxiv** skill for search-and-fetch workflows. Use **this skill** when you need:
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-
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- - Bulk-harvesting all papers in a subject area or date window (OAI-PMH)
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- - Citation counts, influential-citation scores, and cross-database IDs (Semantic Scholar)
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- - Per-paper version history and submitter info (`arXivRaw` metadata)
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-
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- No API key required for either endpoint. Both return JSON or XML over plain HTTP.
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-
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- ---
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-
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- ## OAI-PMH bulk harvest
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-
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- ### Endpoint (confirmed 2026-04-19)
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-
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- ```
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- https://oaipmh.arxiv.org/oai
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- ```
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-
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- `https://export.arxiv.org/oai2` is the old URL — it 301-redirects to the new one. Use the new URL directly to avoid the extra round-trip.
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-
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- ### Harvest all cs papers from a date window
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-
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- ```python
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- import xml.etree.ElementTree as ET
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- from helpers import http_get
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-
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- OAI_NS = {
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- 'oai': 'http://www.openarchives.org/OAI/2.0/',
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- 'arXiv': 'http://arxiv.org/OAI/arXiv/',
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- }
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-
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- def fetch_oai_page(url):
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- """Fetch one OAI-PMH page; return (records_xml_list, next_token_or_None)."""
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- xml = http_get(url)
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- root = ET.fromstring(xml)
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- records = root.findall('.//oai:record', OAI_NS)
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- token_el = root.find('.//oai:resumptionToken', OAI_NS)
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- token = token_el.text if token_el is not None and token_el.text else None
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- return records, token
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-
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- def parse_arxiv_record(rec):
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- """Extract fields from one <record> element (metadataPrefix=arXiv)."""
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- header = rec.find('oai:header', OAI_NS)
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- meta = rec.find('.//arXiv:arXiv', OAI_NS)
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- if meta is None:
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- return None # deleted record (header has status="deleted")
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- authors_el = meta.findall('arXiv:authors/arXiv:author', OAI_NS)
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- authors = []
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- for a in authors_el:
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- fn = (a.findtext('arXiv:forenames', namespaces=OAI_NS) or '').strip()
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- ln = (a.findtext('arXiv:keyname', namespaces=OAI_NS) or '').strip()
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- authors.append(f"{fn} {ln}".strip())
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- return {
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- 'id': meta.findtext('arXiv:id', namespaces=OAI_NS),
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- 'datestamp': header.findtext('oai:datestamp', namespaces=OAI_NS),
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- 'created': meta.findtext('arXiv:created', namespaces=OAI_NS),
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- 'updated': meta.findtext('arXiv:updated', namespaces=OAI_NS),
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- 'title': (meta.findtext('arXiv:title', namespaces=OAI_NS) or '').strip(),
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- 'authors': authors,
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- 'categories': (meta.findtext('arXiv:categories', namespaces=OAI_NS) or '').split(),
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- 'abstract': (meta.findtext('arXiv:abstract', namespaces=OAI_NS) or '').strip(),
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- 'doi': meta.findtext('arXiv:doi', namespaces=OAI_NS),
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- 'journal_ref': meta.findtext('arXiv:journal-ref', namespaces=OAI_NS),
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- 'license': meta.findtext('arXiv:license', namespaces=OAI_NS),
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- }
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-
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- # --- Main harvest loop ---
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- import time
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-
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- BASE = 'https://oaipmh.arxiv.org/oai'
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- first_url = (
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- f"{BASE}?verb=ListRecords"
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- f"&metadataPrefix=arXiv"
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- f"&set=cs"
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- f"&from=2024-01-01"
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- f"&until=2024-01-02"
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- )
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-
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- papers = []
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- url = first_url
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- while url:
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- records, token = fetch_oai_page(url)
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- for rec in records:
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- p = parse_arxiv_record(rec)
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- if p:
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- papers.append(p)
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- print(f" fetched {len(records)} records, total so far: {len(papers)}")
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- if token:
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- url = f"{BASE}?verb=ListRecords&resumptionToken={token}"
92
- time.sleep(5) # OAI-PMH policy: >=5s between pages
93
- else:
94
- url = None
95
-
96
- print(f"Done. {len(papers)} papers harvested.")
97
- # Confirmed output for cs, 2024-01-01 to 2024-01-02:
98
- # fetched 44 records, total so far: 44
99
- # Done. 44 papers harvested.
100
- # For 2024-01-01 to 2024-01-07 (cs): multiple pages, resumptionToken issued when >~200 records
101
- ```
102
-
103
- ### Available verbs
104
-
105
- | Verb | Purpose | Key params |
106
- |---|---|---|
107
- | `Identify` | Repository info, earliest datestamp (`2005-09-16`) | — |
108
- | `ListSets` | All harvestable sets (see table below) | — |
109
- | `ListMetadataFormats` | `oai_dc`, `arXiv`, `arXivOld`, `arXivRaw` | — |
110
- | `ListRecords` | Bulk harvest with date/set filter | `metadataPrefix`, `set`, `from`, `until` |
111
- | `GetRecord` | Single record by OAI identifier | `identifier`, `metadataPrefix` |
112
-
113
- ### Top-level sets (confirmed)
114
-
115
- | setSpec | Name |
116
- |---|---|
117
- | `cs` | Computer Science (all) |
118
- | `cs:cs` | Computer Science (subset notation — same scope) |
119
- | `math` | Mathematics |
120
- | `physics` | Physics |
121
- | `stat` | Statistics |
122
- | `eess` | Electrical Engineering and Systems Science |
123
- | `econ` | Economics |
124
- | `q-bio` | Quantitative Biology |
125
- | `q-fin` | Quantitative Finance |
126
-
127
- Subset sets use `topic:topic:SUBCATEGORY` notation, e.g. `cs:cs:LG` for Machine Learning. List all with `verb=ListSets`.
128
-
129
- ### Available metadata formats
130
-
131
- - `arXiv` — rich: id, created/updated dates, authors (keyname + forenames separately), categories, abstract, doi, journal-ref, license. **Use this.**
132
- - `arXivRaw` — adds `<submitter>`, per-version history (`<version version="v1">` with date and file size), author list as flat string. Use when you need version history.
133
- - `oai_dc` — Dublin Core, minimal. Skip unless you need cross-system compatibility.
134
- - `arXivOld` — legacy format pre-2007. Skip.
135
-
136
- ### GetRecord + arXivRaw (version history)
137
-
138
- ```python
139
- import xml.etree.ElementTree as ET
140
- from helpers import http_get
141
-
142
- RAW_NS = {
143
- 'oai': 'http://www.openarchives.org/OAI/2.0/',
144
- 'raw': 'http://arxiv.org/OAI/arXivRaw/',
145
- }
146
-
147
- xml = http_get(
148
- "https://oaipmh.arxiv.org/oai"
149
- "?verb=GetRecord"
150
- "&metadataPrefix=arXivRaw"
151
- "&identifier=oai:arXiv.org:1706.03762"
152
- )
153
- root = ET.fromstring(xml)
154
- meta = root.find('.//raw:arXivRaw', RAW_NS)
155
-
156
- title = meta.findtext('raw:title', namespaces=RAW_NS)
157
- submitter = meta.findtext('raw:submitter', namespaces=RAW_NS)
158
- versions = meta.findall('raw:version', RAW_NS)
159
- for v in versions:
160
- print(v.get('version'), v.findtext('raw:date', namespaces=RAW_NS))
161
- # Confirmed output for 1706.03762 ("Attention Is All You Need"):
162
- # v1 Mon, 12 Jun 2017 17:57:34 GMT
163
- # v2 Mon, 19 Jun 2017 16:49:45 GMT
164
- # ...
165
- # v7 Wed, 02 Aug 2023 00:41:18 GMT
166
- # submitter: Llion Jones
167
- ```
168
-
169
- ---
170
-
171
- ## Semantic Scholar — citation enrichment for arXiv papers
172
-
173
- No API key required (unauthenticated: 1 req/s, 5000 req/day). With a free key the limit rises to 100 req/s.
174
-
175
- Base URL: `https://api.semanticscholar.org/graph/v1/`
176
-
177
- ### Single paper lookup by arXiv ID
178
-
179
- ```python
180
- import json
181
- from helpers import http_get
182
-
183
- paper = json.loads(http_get(
184
- "https://api.semanticscholar.org/graph/v1/paper/arXiv:1706.03762"
185
- "?fields=title,year,venue,publicationDate,citationCount,"
186
- "influentialCitationCount,authors,abstract,externalIds"
187
- ))
188
- print(paper['title']) # "Attention is All you Need"
189
- print(paper['citationCount']) # 173155 (confirmed 2026-04-19)
190
- print(paper['influentialCitationCount']) # 19629
191
- print(paper['venue']) # "Neural Information Processing Systems"
192
- print(paper['externalIds']['ArXiv']) # "1706.03762"
193
- print(paper['externalIds']['DOI']) # missing if no DOI
194
- for a in paper['authors']:
195
- print(a['name'], a['authorId'])
196
- ```
197
-
198
- The ID format `arXiv:NNNN.NNNNN` is accepted directly — no conversion needed.
199
-
200
- ### Batch lookup (up to 500 IDs per POST)
201
-
202
- ```python
203
- import json
204
- from helpers import http_get
205
- import urllib.request
206
-
207
- ids = ["arXiv:1706.03762", "arXiv:1810.04805", "arXiv:2005.14165"]
208
- fields = "paperId,externalIds,title,year,citationCount,influentialCitationCount"
209
-
210
- body = json.dumps({"ids": ids}).encode()
211
- req = urllib.request.Request(
212
- f"https://api.semanticscholar.org/graph/v1/paper/batch?fields={fields}",
213
- data=body,
214
- headers={"Content-Type": "application/json"},
215
- method="POST",
216
- )
217
- with urllib.request.urlopen(req, timeout=20) as r:
218
- results = json.loads(r.read())
219
-
220
- for p in results:
221
- print(p['externalIds'].get('ArXiv'), p['citationCount'], p['title'][:50])
222
- # Confirmed output (2026-04-19):
223
- # 1706.03762 173155 Attention is All you Need
224
- # 1810.04805 113138 BERT: Pre-training of Deep Bidirectional Tran...
225
- # 2005.14165 (varies) Language Models are Few-Shot Learners
226
- ```
227
-
228
- Note: `helpers.http_get` only does GET. For POST use `urllib.request.Request` directly as above.
229
-
230
- ### Paper search
231
-
232
- ```python
233
- import json
234
- from helpers import http_get
235
-
236
- results = json.loads(http_get(
237
- "https://api.semanticscholar.org/graph/v1/paper/search"
238
- "?query=large+language+model"
239
- "&fields=paperId,externalIds,title,year,citationCount"
240
- "&limit=5"
241
- ))
242
- total = results['total'] # e.g. 3473582 for "large language model"
243
- for p in results['data']:
244
- arxiv_id = p['externalIds'].get('ArXiv', 'no-arxiv')
245
- print(arxiv_id, p['year'], p['citationCount'], p['title'][:50])
246
- # next page: use offset=5, offset=10, etc.
247
- ```
248
-
249
- ### Available fields (pass as comma-separated `fields=` query param)
250
-
251
- | Field | Type | Notes |
252
- |---|---|---|
253
- | `paperId` | str | Semantic Scholar internal ID |
254
- | `externalIds` | dict | Keys: `ArXiv`, `DOI`, `DBLP`, `MAG`, `ACL`, `CorpusId` |
255
- | `title` | str | |
256
- | `abstract` | str | |
257
- | `year` | int | Publication year |
258
- | `publicationDate` | str | `YYYY-MM-DD` |
259
- | `venue` | str | Conference/journal name |
260
- | `citationCount` | int | Total citations |
261
- | `influentialCitationCount` | int | Citations deemed highly influential |
262
- | `authors` | list | Each: `{authorId, name}` |
263
- | `references` | list | List of paper objects (needs own `fields`) |
264
- | `citations` | list | Citing papers (needs own `fields`) |
265
- | `openAccessPdf` | dict | `{url, status, license}` |
266
-
267
- ---
268
-
269
- ## Downloading PDFs
270
-
271
- Direct PDF download — no auth, no redirect for versionless URLs (returns 200 + PDF body directly).
272
-
273
- ```python
274
- import urllib.request
275
-
276
- def download_pdf(arxiv_id, dest_path, version=None):
277
- """
278
- arxiv_id: bare ID like '1706.03762' or versioned '1706.03762v7'
279
- version: if given, appended as 'v{version}' — ignored if arxiv_id already has version
280
- dest_path: where to save, e.g. '/tmp/paper.pdf'
281
- """
282
- if 'v' not in arxiv_id.split('.')[-1] and version:
283
- arxiv_id = f"{arxiv_id}v{version}"
284
- url = f"https://arxiv.org/pdf/{arxiv_id}"
285
- req = urllib.request.Request(url, headers={"User-Agent": "Mozilla/5.0"})
286
- with urllib.request.urlopen(req, timeout=60) as r:
287
- with open(dest_path, 'wb') as f:
288
- f.write(r.read())
289
- print(f"Saved {r.headers.get('content-length', '?')} bytes to {dest_path}")
290
-
291
- download_pdf('1706.03762', '/tmp/attention.pdf')
292
- # Confirmed: saves 2215244 bytes, filename hint in header: '1706.03762v7.pdf'
293
- # Versionless URL resolves to latest version server-side (no redirect, 200 direct)
294
- ```
295
-
296
- ---
297
-
298
- ## Gotchas
299
-
300
- - **OAI-PMH endpoint moved.** `https://export.arxiv.org/oai2` 301-redirects to `https://oaipmh.arxiv.org/oai`. Use the new URL. `helpers.http_get` (which uses `urllib`) does NOT follow redirects — you'll get an empty string or error. Either use `urllib.request.urlopen` with `follow_redirects` logic, or just use the canonical URL directly.
301
-
302
- - **OAI-PMH rate limit: 5 seconds between pages.** The protocol requires a `Retry-After` interval. The server embeds an `expirationDate` on the resumptionToken. Violating the rate limit causes the token to be invalidated and the harvest fails silently. Always `time.sleep(5)` between pages.
303
-
304
- - **Resumption token is opaque but URL-encoded.** The token looks like `verb%3DListRecords%26...%26skip%3D247`. Pass it verbatim as `&resumptionToken=<token>` — do not URL-encode it again.
305
-
306
- - **`datestamp` in OAI-PMH is last-modified date, not submission date.** A paper submitted in 2008 can appear in a 2024 harvest window if it was revised then. The `<created>` and `<updated>` fields inside `<arXiv>` metadata are the actual submission/revision dates.
307
-
308
- - **Deleted records have no `<metadata>` element.** The `<header>` will carry `status="deleted"`. Always check `meta is None` after `find('.//arXiv:arXiv', ...)`.
309
-
310
- - **Author structure differs between OAI-PMH formats.** In `arXiv` metadata, authors are structured: `<author><keyname>Vaswani</keyname><forenames>Ashish</forenames></author>`. In `arXivRaw`, they're a flat comma-separated string: `Ashish Vaswani, Noam Shazeer, ...`. In the Atom API, it's `<name>Ashish Vaswani</name>` (first-last order). Pick the source that matches your downstream use.
311
-
312
- - **Semantic Scholar 429 under unauthenticated bursts.** The unauthenticated limit is ~1 req/s. Rapid parallel calls return `{"code": "429"}`. Add `time.sleep(1)` between single lookups or use the batch POST endpoint (up to 500 IDs, single request) to stay under the limit. The batch endpoint itself counts as 1 request.
313
-
314
- - **Semantic Scholar `externalIds` may lack `ArXiv` key.** Not all papers have an arXiv preprint. When enriching an arXiv list with S2 data, always use `.get('ArXiv')` not `['ArXiv']`.
315
-
316
- - **Atom API rate limit: 1 request per 3 seconds for sustained crawls.** The API returns HTTP 429 `"Rate exceeded."` on rapid-fire requests. The OAI-PMH endpoint is designed for bulk and is more tolerant, but still requires the 5s sleep between resumption pages.
317
-
318
- - **OAI-PMH `set` param uses colon-separated hierarchy, not dot.** The Atom API uses `cat:cs.LG`; OAI-PMH uses `set=cs:cs:LG`. Using `set=cs.LG` returns zero results.
319
-
320
- - **`http_get` in helpers.py does NOT follow HTTP redirects.** If you must use it with the old OAI URL, you'll get an empty body. Either update the URL to the canonical one or use `urllib.request.urlopen` with a redirect handler.
321
-
322
- ---
323
-
324
- ## How this complements the existing arxiv skill
325
-
326
- | Task | Use |
327
- |---|---|
328
- | Search by keyword, author, or category | `arxiv` skill — Atom API |
329
- | Fetch 1–2000 specific papers by ID | `arxiv` skill — `id_list` batch |
330
- | Harvest all papers in a subject over a date range | **this skill** — OAI-PMH |
331
- | Get citation counts / influential citations | **this skill** — Semantic Scholar |
332
- | Get per-version history and submitter name | **this skill** — OAI-PMH `arXivRaw` |
333
- | Download a PDF | either skill (same URL structure) |
1
+ # arXiv Bulk Harvest + Semantic Scholar — OAI-PMH & Citation Enrichment
2
+
3
+ Companion to `domain-skills/arxiv/scraping.md`. Use the **arxiv** skill for search-and-fetch workflows. Use **this skill** when you need:
4
+
5
+ - Bulk-harvesting all papers in a subject area or date window (OAI-PMH)
6
+ - Citation counts, influential-citation scores, and cross-database IDs (Semantic Scholar)
7
+ - Per-paper version history and submitter info (`arXivRaw` metadata)
8
+
9
+ No API key required for either endpoint. Both return JSON or XML over plain HTTP.
10
+
11
+ ---
12
+
13
+ ## OAI-PMH bulk harvest
14
+
15
+ ### Endpoint (confirmed 2026-04-19)
16
+
17
+ ```
18
+ https://oaipmh.arxiv.org/oai
19
+ ```
20
+
21
+ `https://export.arxiv.org/oai2` is the old URL — it 301-redirects to the new one. Use the new URL directly to avoid the extra round-trip.
22
+
23
+ ### Harvest all cs papers from a date window
24
+
25
+ ```python
26
+ import xml.etree.ElementTree as ET
27
+ from helpers import http_get
28
+
29
+ OAI_NS = {
30
+ 'oai': 'http://www.openarchives.org/OAI/2.0/',
31
+ 'arXiv': 'http://arxiv.org/OAI/arXiv/',
32
+ }
33
+
34
+ def fetch_oai_page(url):
35
+ """Fetch one OAI-PMH page; return (records_xml_list, next_token_or_None)."""
36
+ xml = http_get(url)
37
+ root = ET.fromstring(xml)
38
+ records = root.findall('.//oai:record', OAI_NS)
39
+ token_el = root.find('.//oai:resumptionToken', OAI_NS)
40
+ token = token_el.text if token_el is not None and token_el.text else None
41
+ return records, token
42
+
43
+ def parse_arxiv_record(rec):
44
+ """Extract fields from one <record> element (metadataPrefix=arXiv)."""
45
+ header = rec.find('oai:header', OAI_NS)
46
+ meta = rec.find('.//arXiv:arXiv', OAI_NS)
47
+ if meta is None:
48
+ return None # deleted record (header has status="deleted")
49
+ authors_el = meta.findall('arXiv:authors/arXiv:author', OAI_NS)
50
+ authors = []
51
+ for a in authors_el:
52
+ fn = (a.findtext('arXiv:forenames', namespaces=OAI_NS) or '').strip()
53
+ ln = (a.findtext('arXiv:keyname', namespaces=OAI_NS) or '').strip()
54
+ authors.append(f"{fn} {ln}".strip())
55
+ return {
56
+ 'id': meta.findtext('arXiv:id', namespaces=OAI_NS),
57
+ 'datestamp': header.findtext('oai:datestamp', namespaces=OAI_NS),
58
+ 'created': meta.findtext('arXiv:created', namespaces=OAI_NS),
59
+ 'updated': meta.findtext('arXiv:updated', namespaces=OAI_NS),
60
+ 'title': (meta.findtext('arXiv:title', namespaces=OAI_NS) or '').strip(),
61
+ 'authors': authors,
62
+ 'categories': (meta.findtext('arXiv:categories', namespaces=OAI_NS) or '').split(),
63
+ 'abstract': (meta.findtext('arXiv:abstract', namespaces=OAI_NS) or '').strip(),
64
+ 'doi': meta.findtext('arXiv:doi', namespaces=OAI_NS),
65
+ 'journal_ref': meta.findtext('arXiv:journal-ref', namespaces=OAI_NS),
66
+ 'license': meta.findtext('arXiv:license', namespaces=OAI_NS),
67
+ }
68
+
69
+ # --- Main harvest loop ---
70
+ import time
71
+
72
+ BASE = 'https://oaipmh.arxiv.org/oai'
73
+ first_url = (
74
+ f"{BASE}?verb=ListRecords"
75
+ f"&metadataPrefix=arXiv"
76
+ f"&set=cs"
77
+ f"&from=2024-01-01"
78
+ f"&until=2024-01-02"
79
+ )
80
+
81
+ papers = []
82
+ url = first_url
83
+ while url:
84
+ records, token = fetch_oai_page(url)
85
+ for rec in records:
86
+ p = parse_arxiv_record(rec)
87
+ if p:
88
+ papers.append(p)
89
+ print(f" fetched {len(records)} records, total so far: {len(papers)}")
90
+ if token:
91
+ url = f"{BASE}?verb=ListRecords&resumptionToken={token}"
92
+ time.sleep(5) # OAI-PMH policy: >=5s between pages
93
+ else:
94
+ url = None
95
+
96
+ print(f"Done. {len(papers)} papers harvested.")
97
+ # Confirmed output for cs, 2024-01-01 to 2024-01-02:
98
+ # fetched 44 records, total so far: 44
99
+ # Done. 44 papers harvested.
100
+ # For 2024-01-01 to 2024-01-07 (cs): multiple pages, resumptionToken issued when >~200 records
101
+ ```
102
+
103
+ ### Available verbs
104
+
105
+ | Verb | Purpose | Key params |
106
+ |---|---|---|
107
+ | `Identify` | Repository info, earliest datestamp (`2005-09-16`) | — |
108
+ | `ListSets` | All harvestable sets (see table below) | — |
109
+ | `ListMetadataFormats` | `oai_dc`, `arXiv`, `arXivOld`, `arXivRaw` | — |
110
+ | `ListRecords` | Bulk harvest with date/set filter | `metadataPrefix`, `set`, `from`, `until` |
111
+ | `GetRecord` | Single record by OAI identifier | `identifier`, `metadataPrefix` |
112
+
113
+ ### Top-level sets (confirmed)
114
+
115
+ | setSpec | Name |
116
+ |---|---|
117
+ | `cs` | Computer Science (all) |
118
+ | `cs:cs` | Computer Science (subset notation — same scope) |
119
+ | `math` | Mathematics |
120
+ | `physics` | Physics |
121
+ | `stat` | Statistics |
122
+ | `eess` | Electrical Engineering and Systems Science |
123
+ | `econ` | Economics |
124
+ | `q-bio` | Quantitative Biology |
125
+ | `q-fin` | Quantitative Finance |
126
+
127
+ Subset sets use `topic:topic:SUBCATEGORY` notation, e.g. `cs:cs:LG` for Machine Learning. List all with `verb=ListSets`.
128
+
129
+ ### Available metadata formats
130
+
131
+ - `arXiv` — rich: id, created/updated dates, authors (keyname + forenames separately), categories, abstract, doi, journal-ref, license. **Use this.**
132
+ - `arXivRaw` — adds `<submitter>`, per-version history (`<version version="v1">` with date and file size), author list as flat string. Use when you need version history.
133
+ - `oai_dc` — Dublin Core, minimal. Skip unless you need cross-system compatibility.
134
+ - `arXivOld` — legacy format pre-2007. Skip.
135
+
136
+ ### GetRecord + arXivRaw (version history)
137
+
138
+ ```python
139
+ import xml.etree.ElementTree as ET
140
+ from helpers import http_get
141
+
142
+ RAW_NS = {
143
+ 'oai': 'http://www.openarchives.org/OAI/2.0/',
144
+ 'raw': 'http://arxiv.org/OAI/arXivRaw/',
145
+ }
146
+
147
+ xml = http_get(
148
+ "https://oaipmh.arxiv.org/oai"
149
+ "?verb=GetRecord"
150
+ "&metadataPrefix=arXivRaw"
151
+ "&identifier=oai:arXiv.org:1706.03762"
152
+ )
153
+ root = ET.fromstring(xml)
154
+ meta = root.find('.//raw:arXivRaw', RAW_NS)
155
+
156
+ title = meta.findtext('raw:title', namespaces=RAW_NS)
157
+ submitter = meta.findtext('raw:submitter', namespaces=RAW_NS)
158
+ versions = meta.findall('raw:version', RAW_NS)
159
+ for v in versions:
160
+ print(v.get('version'), v.findtext('raw:date', namespaces=RAW_NS))
161
+ # Confirmed output for 1706.03762 ("Attention Is All You Need"):
162
+ # v1 Mon, 12 Jun 2017 17:57:34 GMT
163
+ # v2 Mon, 19 Jun 2017 16:49:45 GMT
164
+ # ...
165
+ # v7 Wed, 02 Aug 2023 00:41:18 GMT
166
+ # submitter: Llion Jones
167
+ ```
168
+
169
+ ---
170
+
171
+ ## Semantic Scholar — citation enrichment for arXiv papers
172
+
173
+ No API key required (unauthenticated: 1 req/s, 5000 req/day). With a free key the limit rises to 100 req/s.
174
+
175
+ Base URL: `https://api.semanticscholar.org/graph/v1/`
176
+
177
+ ### Single paper lookup by arXiv ID
178
+
179
+ ```python
180
+ import json
181
+ from helpers import http_get
182
+
183
+ paper = json.loads(http_get(
184
+ "https://api.semanticscholar.org/graph/v1/paper/arXiv:1706.03762"
185
+ "?fields=title,year,venue,publicationDate,citationCount,"
186
+ "influentialCitationCount,authors,abstract,externalIds"
187
+ ))
188
+ print(paper['title']) # "Attention is All you Need"
189
+ print(paper['citationCount']) # 173155 (confirmed 2026-04-19)
190
+ print(paper['influentialCitationCount']) # 19629
191
+ print(paper['venue']) # "Neural Information Processing Systems"
192
+ print(paper['externalIds']['ArXiv']) # "1706.03762"
193
+ print(paper['externalIds']['DOI']) # missing if no DOI
194
+ for a in paper['authors']:
195
+ print(a['name'], a['authorId'])
196
+ ```
197
+
198
+ The ID format `arXiv:NNNN.NNNNN` is accepted directly — no conversion needed.
199
+
200
+ ### Batch lookup (up to 500 IDs per POST)
201
+
202
+ ```python
203
+ import json
204
+ from helpers import http_get
205
+ import urllib.request
206
+
207
+ ids = ["arXiv:1706.03762", "arXiv:1810.04805", "arXiv:2005.14165"]
208
+ fields = "paperId,externalIds,title,year,citationCount,influentialCitationCount"
209
+
210
+ body = json.dumps({"ids": ids}).encode()
211
+ req = urllib.request.Request(
212
+ f"https://api.semanticscholar.org/graph/v1/paper/batch?fields={fields}",
213
+ data=body,
214
+ headers={"Content-Type": "application/json"},
215
+ method="POST",
216
+ )
217
+ with urllib.request.urlopen(req, timeout=20) as r:
218
+ results = json.loads(r.read())
219
+
220
+ for p in results:
221
+ print(p['externalIds'].get('ArXiv'), p['citationCount'], p['title'][:50])
222
+ # Confirmed output (2026-04-19):
223
+ # 1706.03762 173155 Attention is All you Need
224
+ # 1810.04805 113138 BERT: Pre-training of Deep Bidirectional Tran...
225
+ # 2005.14165 (varies) Language Models are Few-Shot Learners
226
+ ```
227
+
228
+ Note: `helpers.http_get` only does GET. For POST use `urllib.request.Request` directly as above.
229
+
230
+ ### Paper search
231
+
232
+ ```python
233
+ import json
234
+ from helpers import http_get
235
+
236
+ results = json.loads(http_get(
237
+ "https://api.semanticscholar.org/graph/v1/paper/search"
238
+ "?query=large+language+model"
239
+ "&fields=paperId,externalIds,title,year,citationCount"
240
+ "&limit=5"
241
+ ))
242
+ total = results['total'] # e.g. 3473582 for "large language model"
243
+ for p in results['data']:
244
+ arxiv_id = p['externalIds'].get('ArXiv', 'no-arxiv')
245
+ print(arxiv_id, p['year'], p['citationCount'], p['title'][:50])
246
+ # next page: use offset=5, offset=10, etc.
247
+ ```
248
+
249
+ ### Available fields (pass as comma-separated `fields=` query param)
250
+
251
+ | Field | Type | Notes |
252
+ |---|---|---|
253
+ | `paperId` | str | Semantic Scholar internal ID |
254
+ | `externalIds` | dict | Keys: `ArXiv`, `DOI`, `DBLP`, `MAG`, `ACL`, `CorpusId` |
255
+ | `title` | str | |
256
+ | `abstract` | str | |
257
+ | `year` | int | Publication year |
258
+ | `publicationDate` | str | `YYYY-MM-DD` |
259
+ | `venue` | str | Conference/journal name |
260
+ | `citationCount` | int | Total citations |
261
+ | `influentialCitationCount` | int | Citations deemed highly influential |
262
+ | `authors` | list | Each: `{authorId, name}` |
263
+ | `references` | list | List of paper objects (needs own `fields`) |
264
+ | `citations` | list | Citing papers (needs own `fields`) |
265
+ | `openAccessPdf` | dict | `{url, status, license}` |
266
+
267
+ ---
268
+
269
+ ## Downloading PDFs
270
+
271
+ Direct PDF download — no auth, no redirect for versionless URLs (returns 200 + PDF body directly).
272
+
273
+ ```python
274
+ import urllib.request
275
+
276
+ def download_pdf(arxiv_id, dest_path, version=None):
277
+ """
278
+ arxiv_id: bare ID like '1706.03762' or versioned '1706.03762v7'
279
+ version: if given, appended as 'v{version}' — ignored if arxiv_id already has version
280
+ dest_path: where to save, e.g. '/tmp/paper.pdf'
281
+ """
282
+ if 'v' not in arxiv_id.split('.')[-1] and version:
283
+ arxiv_id = f"{arxiv_id}v{version}"
284
+ url = f"https://arxiv.org/pdf/{arxiv_id}"
285
+ req = urllib.request.Request(url, headers={"User-Agent": "Mozilla/5.0"})
286
+ with urllib.request.urlopen(req, timeout=60) as r:
287
+ with open(dest_path, 'wb') as f:
288
+ f.write(r.read())
289
+ print(f"Saved {r.headers.get('content-length', '?')} bytes to {dest_path}")
290
+
291
+ download_pdf('1706.03762', '/tmp/attention.pdf')
292
+ # Confirmed: saves 2215244 bytes, filename hint in header: '1706.03762v7.pdf'
293
+ # Versionless URL resolves to latest version server-side (no redirect, 200 direct)
294
+ ```
295
+
296
+ ---
297
+
298
+ ## Gotchas
299
+
300
+ - **OAI-PMH endpoint moved.** `https://export.arxiv.org/oai2` 301-redirects to `https://oaipmh.arxiv.org/oai`. Use the new URL. `helpers.http_get` (which uses `urllib`) does NOT follow redirects — you'll get an empty string or error. Either use `urllib.request.urlopen` with `follow_redirects` logic, or just use the canonical URL directly.
301
+
302
+ - **OAI-PMH rate limit: 5 seconds between pages.** The protocol requires a `Retry-After` interval. The server embeds an `expirationDate` on the resumptionToken. Violating the rate limit causes the token to be invalidated and the harvest fails silently. Always `time.sleep(5)` between pages.
303
+
304
+ - **Resumption token is opaque but URL-encoded.** The token looks like `verb%3DListRecords%26...%26skip%3D247`. Pass it verbatim as `&resumptionToken=<token>` — do not URL-encode it again.
305
+
306
+ - **`datestamp` in OAI-PMH is last-modified date, not submission date.** A paper submitted in 2008 can appear in a 2024 harvest window if it was revised then. The `<created>` and `<updated>` fields inside `<arXiv>` metadata are the actual submission/revision dates.
307
+
308
+ - **Deleted records have no `<metadata>` element.** The `<header>` will carry `status="deleted"`. Always check `meta is None` after `find('.//arXiv:arXiv', ...)`.
309
+
310
+ - **Author structure differs between OAI-PMH formats.** In `arXiv` metadata, authors are structured: `<author><keyname>Vaswani</keyname><forenames>Ashish</forenames></author>`. In `arXivRaw`, they're a flat comma-separated string: `Ashish Vaswani, Noam Shazeer, ...`. In the Atom API, it's `<name>Ashish Vaswani</name>` (first-last order). Pick the source that matches your downstream use.
311
+
312
+ - **Semantic Scholar 429 under unauthenticated bursts.** The unauthenticated limit is ~1 req/s. Rapid parallel calls return `{"code": "429"}`. Add `time.sleep(1)` between single lookups or use the batch POST endpoint (up to 500 IDs, single request) to stay under the limit. The batch endpoint itself counts as 1 request.
313
+
314
+ - **Semantic Scholar `externalIds` may lack `ArXiv` key.** Not all papers have an arXiv preprint. When enriching an arXiv list with S2 data, always use `.get('ArXiv')` not `['ArXiv']`.
315
+
316
+ - **Atom API rate limit: 1 request per 3 seconds for sustained crawls.** The API returns HTTP 429 `"Rate exceeded."` on rapid-fire requests. The OAI-PMH endpoint is designed for bulk and is more tolerant, but still requires the 5s sleep between resumption pages.
317
+
318
+ - **OAI-PMH `set` param uses colon-separated hierarchy, not dot.** The Atom API uses `cat:cs.LG`; OAI-PMH uses `set=cs:cs:LG`. Using `set=cs.LG` returns zero results.
319
+
320
+ - **`http_get` in helpers.py does NOT follow HTTP redirects.** If you must use it with the old OAI URL, you'll get an empty body. Either update the URL to the canonical one or use `urllib.request.urlopen` with a redirect handler.
321
+
322
+ ---
323
+
324
+ ## How this complements the existing arxiv skill
325
+
326
+ | Task | Use |
327
+ |---|---|
328
+ | Search by keyword, author, or category | `arxiv` skill — Atom API |
329
+ | Fetch 1–2000 specific papers by ID | `arxiv` skill — `id_list` batch |
330
+ | Harvest all papers in a subject over a date range | **this skill** — OAI-PMH |
331
+ | Get citation counts / influential citations | **this skill** — Semantic Scholar |
332
+ | Get per-version history and submitter name | **this skill** — OAI-PMH `arXivRaw` |
333
+ | Download a PDF | either skill (same URL structure) |