@pella-labs/pinakes 0.4.3 → 0.5.0

package/dist/cli/contradiction.js

@@ -45,7 +45,7 @@ export async function contradictionScan(opts) {
     }
     // Get all claims grouped by topic
     const allClaims = bundle.writer
-        .prepare(`SELECT topic, claim, source_uri FROM pinakes_claims WHERE scope = ? ORDER BY topic`)
+        .prepare(`SELECT topic, claim, source_uri FROM pinakes_claims WHERE scope = ? AND superseded_at IS NULL ORDER BY topic`)
         .all(scope);
     if (allClaims.length === 0) {
         return { scanned_pairs: 0, topics_scanned: 0, claims_extracted: 0, contradictions: [], rate_limited: false };

package/dist/cli/contradiction.js.map

@@ -1 +1 @@
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package/dist/cli/crystallize-scheduler.d.ts

@@ -0,0 +1,24 @@
+import type { Database as BetterSqliteDatabase } from 'better-sqlite3';
+export declare class CrystallizationScheduler {
+    private readonly projectRoot;
+    private readonly writer;
+    private commitPollTimer;
+    private timeFallbackTimer;
+    private lastKnownHead;
+    private running;
+    constructor(projectRoot: string, writer: BetterSqliteDatabase);
+    /**
+     * Start all three trigger layers. Call once after server is ready.
+     */
+    start(): void;
+    /**
+     * Stop all timers. Called during graceful shutdown.
+     */
+    stop(): void;
+    private pollCommit;
+    private tryRun;
+    private isRateLimitClear;
+    private getMetaValue;
+    private setMetaValue;
+}
+//# sourceMappingURL=crystallize-scheduler.d.ts.map

package/dist/cli/crystallize-scheduler.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/crystallize-scheduler.js

@@ -0,0 +1,164 @@
+import { crystallizeCommand, getGitHead } from './crystallize.js';
+import { createLlmProvider } from '../llm/provider.js';
+import { logger } from '../observability/logger.js';
+/**
+ * CrystallizationScheduler — autonomous wiki evolution via three trigger layers.
+ *
+ * Runs inside the `pinakes serve` process and automatically distills coding
+ * sessions into wiki pages without human intervention. The existing confidence
+ * scoring, decay, contradiction detection, and supersession systems serve as
+ * quality controls.
+ *
+ * **Trigger layers**:
+ *   1. **Startup catch-up** — on construction, compare stored HEAD against
+ *      current HEAD. If different, crystallize un-captured commits.
+ *   2. **Commit poll** — check `git rev-parse HEAD` every 60s. If HEAD
+ *      changed since last poll, trigger crystallization.
+ *   3. **Time fallback** — every 4 hours, trigger crystallization regardless
+ *      of HEAD changes. Catches solo devs who don't commit often.
+ *
+ * **Rate limit**: at most once per hour. Stored in `pinakes_meta` as
+ * `last_crystallize_ts` and `last_crystallize_head`.
+ *
+ * **Graceful degradation**: skips silently if no LLM provider is available
+ * or if the project is not a git repo.
+ */
+const RATE_LIMIT_MS = 60 * 60 * 1000; // 1 hour
+const COMMIT_POLL_MS = 60 * 1000; // 60 seconds
+const TIME_FALLBACK_MS = 4 * 60 * 60 * 1000; // 4 hours
+const META_KEY_TS = 'last_crystallize_ts';
+const META_KEY_HEAD = 'last_crystallize_head';
+export class CrystallizationScheduler {
+    projectRoot;
+    writer;
+    commitPollTimer = null;
+    timeFallbackTimer = null;
+    lastKnownHead = null;
+    running = false;
+    constructor(projectRoot, writer) {
+        this.projectRoot = projectRoot;
+        this.writer = writer;
+    }
+    /**
+     * Start all three trigger layers. Call once after server is ready.
+     */
+    start() {
+        // 1. Startup catch-up
+        this.lastKnownHead = getGitHead(this.projectRoot);
+        if (this.lastKnownHead) {
+            const storedHead = this.getMetaValue(META_KEY_HEAD);
+            if (storedHead !== this.lastKnownHead) {
+                logger.info({ storedHead, currentHead: this.lastKnownHead }, 'crystallize: startup catch-up — HEAD changed since last run');
+                void this.tryRun('startup');
+            }
+        }
+        // 2. Commit poll (every 60s)
+        this.commitPollTimer = setInterval(() => {
+            this.pollCommit();
+        }, COMMIT_POLL_MS);
+        this.commitPollTimer.unref();
+        // 3. Time fallback (every 4h)
+        this.timeFallbackTimer = setInterval(() => {
+            void this.tryRun('time-fallback');
+        }, TIME_FALLBACK_MS);
+        this.timeFallbackTimer.unref();
+        logger.info('crystallize scheduler started (commit poll + time fallback)');
+    }
+    /**
+     * Stop all timers. Called during graceful shutdown.
+     */
+    stop() {
+        if (this.commitPollTimer) {
+            clearInterval(this.commitPollTimer);
+            this.commitPollTimer = null;
+        }
+        if (this.timeFallbackTimer) {
+            clearInterval(this.timeFallbackTimer);
+            this.timeFallbackTimer = null;
+        }
+    }
+    // -------------------------------------------------------------------------
+    // Internals
+    // -------------------------------------------------------------------------
+    pollCommit() {
+        const head = getGitHead(this.projectRoot);
+        if (!head)
+            return; // not a git repo
+        if (this.lastKnownHead === null) {
+            this.lastKnownHead = head;
+            return;
+        }
+        if (head !== this.lastKnownHead) {
+            this.lastKnownHead = head;
+            logger.info({ head }, 'crystallize: new commit detected');
+            void this.tryRun('commit');
+        }
+    }
+    async tryRun(trigger) {
+        if (this.running)
+            return;
+        if (!this.isRateLimitClear()) {
+            logger.debug({ trigger }, 'crystallize: rate-limited, skipping');
+            return;
+        }
+        this.running = true;
+        try {
+            const llm = createLlmProvider();
+            if (!llm.available()) {
+                logger.debug('crystallize: no LLM provider available, skipping');
+                return;
+            }
+            logger.info({ trigger }, 'crystallize: running auto-crystallization');
+            const result = await crystallizeCommand({
+                projectRoot: this.projectRoot,
+                llmProvider: llm,
+            });
+            if (result.skipped_reason) {
+                logger.info({ trigger, reason: result.skipped_reason }, 'crystallize: skipped');
+            }
+            else {
+                logger.info({ trigger, drafts: result.drafts_created }, 'crystallize: completed');
+            }
+            // Update meta regardless of outcome (rate limit resets)
+            this.setMetaValue(META_KEY_TS, String(Date.now()));
+            const head = getGitHead(this.projectRoot);
+            if (head) {
+                this.setMetaValue(META_KEY_HEAD, head);
+            }
+        }
+        catch (err) {
+            logger.warn({ err, trigger }, 'crystallize: auto-crystallization failed');
+        }
+        finally {
+            this.running = false;
+        }
+    }
+    isRateLimitClear() {
+        const lastTs = this.getMetaValue(META_KEY_TS);
+        if (!lastTs)
+            return true;
+        return Date.now() - parseInt(lastTs, 10) >= RATE_LIMIT_MS;
+    }
+    getMetaValue(key) {
+        try {
+            const row = this.writer
+                .prepare(`SELECT value FROM pinakes_meta WHERE key = ?`)
+                .get(key);
+            return row?.value;
+        }
+        catch {
+            return undefined;
+        }
+    }
+    setMetaValue(key, value) {
+        try {
+            this.writer
+                .prepare(`INSERT OR REPLACE INTO pinakes_meta (key, value) VALUES (?, ?)`)
+                .run(key, value);
+        }
+        catch (err) {
+            logger.warn({ err, key }, 'crystallize: failed to write meta value');
+        }
+    }
+}
+//# sourceMappingURL=crystallize-scheduler.js.map

package/dist/cli/crystallize-scheduler.js.map

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package/dist/cli/crystallize.d.ts

@@ -0,0 +1,57 @@
+export interface DiffEntry {
+    filePath: string;
+    lines: string[];
+    significantLines: number;
+}
+export interface CrystallizeOptions {
+    projectRoot?: string;
+    dbPath?: string;
+    since?: string;
+    commits?: number;
+    include?: string[];
+    exclude?: string[];
+    minLines?: number;
+    /** Injected LLM provider (tests). Default: createLlmProvider(). */
+    llmProvider?: {
+        name: string;
+        available(): boolean;
+        complete(o: {
+            system: string;
+            prompt: string;
+            maxTokens: number;
+        }): Promise<string>;
+    };
+}
+export interface CrystallizeResult {
+    drafts_created: number;
+    output_dir: string;
+    skipped_reason?: string;
+}
+/**
+ * Split a unified diff into per-file entries. Each entry carries the file
+ * path, the raw lines, and a count of "significant" changed lines (non-blank
+ * additions/deletions, excluding the `+++`/`---` header lines).
+ */
+export declare function parseDiff(diffOutput: string): DiffEntry[];
+export declare function filterDiff(entries: DiffEntry[], opts?: {
+    include?: string[];
+    exclude?: string[];
+}): DiffEntry[];
+export declare function truncateDiff(diffText: string, maxTokens: number): string;
+export declare function getGitDiff(projectRoot: string, opts: {
+    since?: string;
+    commits?: number;
+}): {
+    diff: string;
+    commits: string[];
+};
+/**
+ * Get current git HEAD SHA. Returns null if not a git repo or git fails.
+ */
+export declare function getGitHead(projectRoot: string): string | null;
+export declare function parseLlmDrafts(response: string): Array<{
+    title: string;
+    content: string;
+}>;
+export declare function crystallizeCommand(opts: CrystallizeOptions): Promise<CrystallizeResult>;
+//# sourceMappingURL=crystallize.d.ts.map

package/dist/cli/crystallize.d.ts.map

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package/dist/cli/crystallize.js

@@ -0,0 +1,329 @@
+import { execFileSync } from 'node:child_process';
+import { existsSync, mkdirSync, writeFileSync, } from 'node:fs';
+import { join, relative } from 'node:path';
+import { closeDb, openDb } from '../db/client.js';
+import { countTokens } from '../gate/budget.js';
+import { createLlmProvider } from '../llm/provider.js';
+import { resolveAbs, projectWikiPath as defaultProjectWikiPath, projectDbPath as defaultProjectDbPath, } from '../paths.js';
+// ---------------------------------------------------------------------------
+// Constants
+// ---------------------------------------------------------------------------
+const DEFAULT_EXCLUDES = [
+    '*.test.ts', '*.spec.ts', '*.lock', '*-lock.json',
+    'node_modules/', 'dist/', '*.map',
+];
+const DEFAULT_MIN_LINES = 10;
+const MAX_DIFF_TOKENS = 50_000;
+// ---------------------------------------------------------------------------
+// Diff parsing
+// ---------------------------------------------------------------------------
+/**
+ * Split a unified diff into per-file entries. Each entry carries the file
+ * path, the raw lines, and a count of "significant" changed lines (non-blank
+ * additions/deletions, excluding the `+++`/`---` header lines).
+ */
+export function parseDiff(diffOutput) {
+    const entries = [];
+    const sections = diffOutput.split(/^(?=diff --git )/m);
+    for (const section of sections) {
+        if (!section.trim())
+            continue;
+        const plusMatch = section.match(/^\+\+\+ b\/(.+)$/m);
+        if (!plusMatch)
+            continue;
+        const filePath = plusMatch[1];
+        const lines = section.split('\n');
+        let significantLines = 0;
+        for (const line of lines) {
+            if ((line.startsWith('+') || line.startsWith('-')) &&
+                !line.startsWith('+++') &&
+                !line.startsWith('---')) {
+                if (line.slice(1).trim().length > 0) {
+                    significantLines++;
+                }
+            }
+        }
+        entries.push({ filePath, lines, significantLines });
+    }
+    return entries;
+}
+// ---------------------------------------------------------------------------
+// Diff filtering
+// ---------------------------------------------------------------------------
+function matchesPattern(filePath, pattern) {
+    if (pattern.endsWith('/')) {
+        return filePath.includes(pattern) || filePath.startsWith(pattern);
+    }
+    if (pattern.startsWith('*')) {
+        return filePath.endsWith(pattern.slice(1));
+    }
+    return filePath === pattern;
+}
+export function filterDiff(entries, opts = {}) {
+    const excludes = opts.exclude ?? DEFAULT_EXCLUDES;
+    const includes = opts.include;
+    return entries.filter((entry) => {
+        for (const pattern of excludes) {
+            if (matchesPattern(entry.filePath, pattern))
+                return false;
+        }
+        if (includes && includes.length > 0) {
+            return includes.some((p) => matchesPattern(entry.filePath, p));
+        }
+        return true;
+    });
+}
+// ---------------------------------------------------------------------------
+// Diff truncation
+// ---------------------------------------------------------------------------
+export function truncateDiff(diffText, maxTokens) {
+    const tc = countTokens(diffText);
+    if (tc <= maxTokens)
+        return diffText;
+    const ratio = maxTokens / tc;
+    const cutAt = Math.floor(diffText.length * ratio);
+    return diffText.slice(0, cutAt) + '\n\n[... diff truncated due to size ...]';
+}
+// ---------------------------------------------------------------------------
+// Git helpers
+// ---------------------------------------------------------------------------
+export function getGitDiff(projectRoot, opts) {
+    const cwd = projectRoot;
+    let diffArgs;
+    if (opts.since) {
+        diffArgs = ['diff', `HEAD@{${opts.since}}`, 'HEAD'];
+    }
+    else {
+        const n = opts.commits ?? 1;
+        diffArgs = ['diff', `HEAD~${n}..HEAD`];
+    }
+    const diff = execFileSync('git', diffArgs, {
+        cwd,
+        encoding: 'utf-8',
+        maxBuffer: 10 * 1024 * 1024,
+    });
+    let logArgs;
+    if (opts.since) {
+        logArgs = ['log', `--since=${opts.since}`, '--format=%H'];
+    }
+    else {
+        const n = opts.commits ?? 1;
+        logArgs = ['log', `-${n}`, '--format=%H'];
+    }
+    const logOutput = execFileSync('git', logArgs, { cwd, encoding: 'utf-8' });
+    const commits = logOutput.trim().split('\n').filter(Boolean);
+    return { diff, commits };
+}
+/**
+ * Get current git HEAD SHA. Returns null if not a git repo or git fails.
+ */
+export function getGitHead(projectRoot) {
+    try {
+        return execFileSync('git', ['rev-parse', 'HEAD'], {
+            cwd: projectRoot,
+            encoding: 'utf-8',
+        }).trim();
+    }
+    catch {
+        return null;
+    }
+}
+// ---------------------------------------------------------------------------
+// LLM prompt + parsing
+// ---------------------------------------------------------------------------
+const CRYSTALLIZE_SYSTEM = `You are a technical documentation writer distilling a coding session into wiki knowledge pages.
+
+Given a git diff and optional existing wiki context, identify the most important decisions, learnings, and architectural changes. For each, produce a wiki page.
+
+Rules:
+- Focus on WHY decisions were made, not just WHAT changed
+- Each page should be self-contained and useful to a future developer
+- Use markdown format with a clear H1 title
+- Include rationale/context sections
+- Reference relevant source files
+- Don't document trivial changes (formatting, typos, simple renames)
+- Output pages separated by a line containing only "---PAGE_BREAK---"
+- Each page should start with an H1 heading on the first line
+- Keep each page under 500 words`;
+function buildPrompt(diffText, wikiContext, commits) {
+    let prompt = `## Git Diff (commits: ${commits.join(', ')})\n\n\`\`\`diff\n${diffText}\n\`\`\`\n`;
+    if (wikiContext) {
+        prompt += `\n## Existing Wiki Context (avoid duplicating this)\n\n${wikiContext}\n`;
+    }
+    prompt += '\nDistill the significant decisions and learnings from this diff into wiki pages.';
+    return prompt;
+}
+export function parseLlmDrafts(response) {
+    const pages = response.split(/^---PAGE_BREAK---$/m);
+    const drafts = [];
+    for (const page of pages) {
+        const trimmed = page.trim();
+        if (!trimmed)
+            continue;
+        const titleMatch = trimmed.match(/^#\s+(.+)$/m);
+        const title = titleMatch ? titleMatch[1].trim() : 'untitled';
+        drafts.push({ title, content: trimmed });
+    }
+    return drafts;
+}
+// ---------------------------------------------------------------------------
+// Draft writing (directly to wiki root)
+// ---------------------------------------------------------------------------
+function slugify(title) {
+    return title
+        .toLowerCase()
+        .replace(/^#+\s*/, '')
+        .replace(/[^a-z0-9]+/g, '-')
+        .replace(/(^-|-$)/g, '')
+        .slice(0, 80);
+}
+function writeWikiPage(wikiRoot, title, content, commits) {
+    const slug = slugify(title);
+    if (!slug)
+        return '';
+    const frontmatter = [
+        '---',
+        'confidence: crystallized',
+        `source: crystallize`,
+        `crystallized_at: ${new Date().toISOString()}`,
+        `source_commits: [${commits.join(', ')}]`,
+        '---',
+        '',
+    ].join('\n');
+    const filePath = join(wikiRoot, `${slug}.md`);
+    writeFileSync(filePath, frontmatter + content, 'utf-8');
+    return filePath;
+}
+// ---------------------------------------------------------------------------
+// Wiki context
+// ---------------------------------------------------------------------------
+function getWikiContext(bundle) {
+    try {
+        const reader = bundle.readers[0] ?? bundle.writer;
+        const rows = reader
+            .prepare(`SELECT title, source_uri, substr(content, 1, 300) as content
+         FROM pinakes_nodes
+         WHERE scope = 'project'
+         ORDER BY updated_at DESC
+         LIMIT 10`)
+            .all();
+        if (rows.length === 0)
+            return '';
+        return rows
+            .map((r) => `### ${r.title ?? r.source_uri}\n${r.content}`)
+            .join('\n\n');
+    }
+    catch {
+        return '';
+    }
+}
+// ---------------------------------------------------------------------------
+// Main: crystallize (direct wiki write)
+// ---------------------------------------------------------------------------
+export async function crystallizeCommand(opts) {
+    const projectRoot = resolveAbs(opts.projectRoot ?? process.cwd());
+    const wikiRoot = defaultProjectWikiPath(projectRoot);
+    // 1. Git diff
+    let gitResult;
+    try {
+        gitResult = getGitDiff(projectRoot, {
+            since: opts.since,
+            commits: opts.commits,
+        });
+    }
+    catch (err) {
+        return {
+            drafts_created: 0,
+            output_dir: wikiRoot,
+            skipped_reason: `git diff failed: ${err instanceof Error ? err.message : err}`,
+        };
+    }
+    if (!gitResult.diff.trim()) {
+        return {
+            drafts_created: 0,
+            output_dir: wikiRoot,
+            skipped_reason: 'no changes found in git diff',
+        };
+    }
+    // 2. Parse + filter
+    const allEntries = parseDiff(gitResult.diff);
+    const filtered = filterDiff(allEntries, {
+        include: opts.include,
+        exclude: opts.exclude,
+    });
+    // 3. Min lines check
+    const minLines = opts.minLines ?? DEFAULT_MIN_LINES;
+    const totalSignificant = filtered.reduce((sum, e) => sum + e.significantLines, 0);
+    if (totalSignificant < minLines) {
+        return {
+            drafts_created: 0,
+            output_dir: wikiRoot,
+            skipped_reason: `only ${totalSignificant} significant lines (minimum: ${minLines})`,
+        };
+    }
+    // 4. Reconstruct filtered diff, truncate if needed
+    let diffText = filtered
+        .map((e) => e.lines.join('\n'))
+        .join('\n');
+    diffText = truncateDiff(diffText, MAX_DIFF_TOKENS);
+    // 5. Wiki context
+    const dbPath = opts.dbPath
+        ? resolveAbs(opts.dbPath)
+        : defaultProjectDbPath(projectRoot);
+    let wikiContext = '';
+    if (existsSync(dbPath)) {
+        const bundle = openDb(dbPath);
+        try {
+            wikiContext = getWikiContext(bundle);
+        }
+        finally {
+            closeDb(bundle);
+        }
+    }
+    // 6. LLM call
+    const llm = opts.llmProvider ?? createLlmProvider();
+    if (!llm.available()) {
+        return {
+            drafts_created: 0,
+            output_dir: wikiRoot,
+            skipped_reason: 'no LLM provider available',
+        };
+    }
+    const prompt = buildPrompt(diffText, wikiContext, gitResult.commits);
+    let response;
+    try {
+        response = await llm.complete({
+            system: CRYSTALLIZE_SYSTEM,
+            prompt,
+            maxTokens: 4000,
+        });
+    }
+    catch (err) {
+        return {
+            drafts_created: 0,
+            output_dir: wikiRoot,
+            skipped_reason: `LLM call failed: ${err instanceof Error ? err.message : err}`,
+        };
+    }
+    // 7. Parse + write directly to wiki
+    const drafts = parseLlmDrafts(response);
+    if (drafts.length === 0) {
+        return {
+            drafts_created: 0,
+            output_dir: wikiRoot,
+            skipped_reason: 'LLM produced no draft pages',
+        };
+    }
+    mkdirSync(wikiRoot, { recursive: true });
+    let created = 0;
+    for (const draft of drafts) {
+        const path = writeWikiPage(wikiRoot, draft.title, draft.content, gitResult.commits);
+        if (path) {
+            created++;
+            // eslint-disable-next-line no-console
+            console.error(`  wiki: ${relative(wikiRoot, path)}`);
+        }
+    }
+    return { drafts_created: created, output_dir: wikiRoot };
+}
+//# sourceMappingURL=crystallize.js.map

package/dist/cli/crystallize.js.map

@@ -0,0 +1 @@
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