@pella-labs/pinakes 0.3.5 → 0.3.7

package/dist/cli/index.js

@@ -2,6 +2,8 @@
 import { auditCommand, renderAudit } from './audit.js';
 import { auditWikiCommand } from './audit-wiki.js';
 import { contradictionScanCommand } from './contradiction-cli.js';
+import { loadIgnorePatterns, cleanIgnoredFromWiki } from '../init/ignore.js';
+import { resolveAbs, projectWikiPath as defaultProjectWikiPath, } from '../paths.js';
 import { exportCommand, renderExport } from './export.js';
 import { importCommand, renderImport } from './import.js';
 import { purgeCommand, renderPurge } from './purge.js';
@@ -107,6 +109,15 @@ async function main() {
                 `${result.gaps_found} gaps, ${result.stub_pages_created.length} stub pages created.`);
             break;
         }
+        case 'clean-wiki': {
+            const projectRoot = resolveAbs(getString(flags, 'project-root') ?? process.cwd());
+            const wikiRoot = defaultProjectWikiPath(projectRoot);
+            const patterns = loadIgnorePatterns(projectRoot);
+            const removed = cleanIgnoredFromWiki(projectRoot, wikiRoot, patterns);
+            // eslint-disable-next-line no-console
+            console.log(`Removed ${removed} ignored file(s) from wiki.`);
+            break;
+        }
         case 'purge': {
             const scope = getRequiredString(flags, 'scope');
             const result = purgeCommand({
@@ -188,6 +199,7 @@ Usage:
   pinakes status             [--project-root <dir>] [--db-path <path>] [--profile-db-path <path>]
   pinakes audit              [--n <count>] [--scope project|personal] [--project-root <dir>] [--db-path <path>]
   pinakes audit-wiki         [--project-root <dir>] [--db-path <path>]
+  pinakes clean-wiki         [--project-root <dir>]
   pinakes purge              --scope <project|personal> --confirm [--project-root <dir>] [--db-path <path>]
   pinakes export             --scope <project|personal> [--out file.json] [--project-root <dir>] [--db-path <path>]
   pinakes import             --scope <project|personal> --in file.json [--project-root <dir>] [--db-path <path>]

package/dist/cli/index.js.map

@@ -1 +1 @@
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package/dist/cli/serve.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"serve.d.ts","sourceRoot":"","sources":["../../src/cli/serve.ts"],"names":[],"mappings":";AAKA,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAiCpE;;;;;;;;;;;;;;;;;;;GAmBG;AAEH,MAAM,WAAW,YAAY;IAC3B,2FAA2F;IAC3F,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,iFAAiF;IACjF,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,2DAA2D;IAC3D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0DAA0D;IAC1D,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB;AAED,UAAU,YAAY;IACpB,MAAM,EAAE,SAAS,CAAC;IAClB,QAAQ,EAAE,CAAC,MAAM,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;CAC7C;AAED;;;;GAIG;AACH,wBAAsB,WAAW,CAAC,OAAO,EAAE,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,CAgN9E;AAED;;;GAGG;AACH,wBAAsB,YAAY,CAAC,OAAO,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC,CAiBvE"}
+{"version":3,"file":"serve.d.ts","sourceRoot":"","sources":["../../src/cli/serve.ts"],"names":[],"mappings":";AAKA,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAkCpE;;;;;;;;;;;;;;;;;;;GAmBG;AAEH,MAAM,WAAW,YAAY;IAC3B,2FAA2F;IAC3F,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,iFAAiF;IACjF,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,2DAA2D;IAC3D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0DAA0D;IAC1D,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB;AAED,UAAU,YAAY;IACpB,MAAM,EAAE,SAAS,CAAC;IAClB,QAAQ,EAAE,CAAC,MAAM,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;CAC7C;AAED;;;;GAIG;AACH,wBAAsB,WAAW,CAAC,OAAO,EAAE,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,CAoO9E;AAED;;;GAGG;AACH,wBAAsB,YAAY,CAAC,OAAO,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC,CAiBvE"}

package/dist/cli/serve.js

@@ -10,6 +10,7 @@ import { ChokidarWatcher } from '../ingest/chokidar.js';
 import { RepoMirrorWatcher } from '../ingest/repo-mirror.js';
 import { scanRepoMarkdownFiles } from '../init/scanner.js';
 import { copyMarkdownToWiki } from '../init/copy.js';
+import { ensurePinakesIgnoreFile, loadIgnorePatterns, cleanIgnoredFromWiki } from '../init/ignore.js';
 import { IngesterService } from '../ingest/ingester.js';
 import { checkConsistency, listMarkdownFiles } from '../ingest/manifest.js';
 import { executeToolConfig, makeExecuteHandler } from '../mcp/tools/execute.js';
@@ -27,8 +28,9 @@ import { QuickJSExecutor } from '../sandbox/executor.js';
  */
 export async function buildServer(options) {
     const projectRoot = resolveAbs(options.projectRoot ?? process.cwd());
-    // Ensure .pinakes/.gitignore exists before any wiki operations
+    // Ensure .pinakes/.gitignore and .pinakesignore exist before any wiki operations
     ensurePinakesGitignore(projectRoot);
+    ensurePinakesIgnoreFile(projectRoot);
     // Migrate wiki from old centralized location to in-repo path
     migrateLegacyWikiToInRepo(projectRoot);
     const projectWiki = defaultProjectWikiPath(projectRoot);
@@ -91,6 +93,24 @@ export async function buildServer(options) {
         wikiRoot: projectWiki,
     });
     await repoMirror.start();
+    // Step 5c: watch .pinakesignore for changes — clean wiki on update
+    const pinakesIgnorePath = resolve(projectRoot, '.pinakesignore');
+    let ignoreWatcher = null;
+    try {
+        const chokidarMod = await import('chokidar');
+        ignoreWatcher = chokidarMod.default.watch(pinakesIgnorePath, { ignoreInitial: true });
+        ignoreWatcher.on('change', () => {
+            logger.info('.pinakesignore changed — cleaning ignored files from wiki');
+            const patterns = loadIgnorePatterns(projectRoot);
+            const removed = cleanIgnoredFromWiki(projectRoot, projectWiki, patterns);
+            if (removed > 0) {
+                logger.info({ removed }, 'cleaned ignored files from wiki');
+            }
+        });
+    }
+    catch (err) {
+        logger.warn({ err }, 'failed to watch .pinakesignore');
+    }
     // Step 6: build the MCP server
     const repository = new Repository(projectBundle, personalBundle);
     const executor = new QuickJSExecutor();
@@ -118,7 +138,7 @@ export async function buildServer(options) {
         'Only fall back to Grep/Read/Glob after checking the knowledge base, or when you need ' +
         'to find exact symbols, read specific source files, or make code changes. ' +
         `Use \`${executeToolName}\` for advanced operations: graph traversal, gap detection, writing new knowledge.`;
-    const mcp = new McpServer({ name: serverName, version: '0.3.5' }, { capabilities: { tools: {} }, instructions });
+    const mcp = new McpServer({ name: serverName, version: '0.3.7' }, { capabilities: { tools: {} }, instructions });
     mcp.registerTool(searchToolName, searchToolConfig, instrumentHandler(searchToolName, makeSearchHandler({
         repository, embedder, bundle: projectBundle,
         personalBundle: personalBundle ?? undefined,
@@ -180,6 +200,8 @@ export async function buildServer(options) {
         logger.info({ signal }, 'pinakes shutting down');
         try {
             clearInterval(healthCheckTimer);
+            if (ignoreWatcher)
+                await ignoreWatcher.close();
             await repoMirror.stop();
             await projectWatcher.stop();
             if (personalWatcher)

package/dist/cli/serve.js.map

@@ -1 +1 @@
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package/dist/ingest/repo-mirror.d.ts

@@ -7,6 +7,7 @@ export declare class RepoMirrorWatcher {
     private pending;
     private readonly projectRoot;
     private readonly wikiRoot;
+    private readonly ignorePatterns;
     constructor(opts: RepoMirrorOptions);
     start(): Promise<void>;
     stop(): Promise<void>;

package/dist/ingest/repo-mirror.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"repo-mirror.d.ts","sourceRoot":"","sources":["../../src/ingest/repo-mirror.ts"],"names":[],"mappings":"AAqBA,MAAM,WAAW,iBAAiB;IAChC,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAQD,qBAAa,iBAAiB;IAC5B,OAAO,CAAC,OAAO,CAA0B;IACzC,OAAO,CAAC,OAAO,CAAyC;IACxD,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAS;gBAEtB,IAAI,EAAE,iBAAiB;IAK7B,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IA4CtB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAY3B,OAAO,CAAC,WAAW;IAoBnB,OAAO,CAAC,aAAa;CAmBtB"}
+{"version":3,"file":"repo-mirror.d.ts","sourceRoot":"","sources":["../../src/ingest/repo-mirror.ts"],"names":[],"mappings":"AAsBA,MAAM,WAAW,iBAAiB;IAChC,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAQD,qBAAa,iBAAiB;IAC5B,OAAO,CAAC,OAAO,CAA0B;IACzC,OAAO,CAAC,OAAO,CAAyC;IACxD,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;IACrC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAS;IAClC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAkB;gBAErC,IAAI,EAAE,iBAAiB;IAM7B,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAgDtB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAY3B,OAAO,CAAC,WAAW;IAoBnB,OAAO,CAAC,aAAa;CAmBtB"}

package/dist/ingest/repo-mirror.js

@@ -1,6 +1,7 @@
 import { cpSync, existsSync, mkdirSync, rmSync } from 'node:fs';
 import { dirname, relative, resolve } from 'node:path';
 import chokidar from 'chokidar';
+import { loadIgnorePatterns, shouldIgnore } from '../init/ignore.js';
 import { logger } from '../observability/logger.js';
 /**
  * `RepoMirrorWatcher` — one-way sync from project repo → wiki directory.
@@ -19,9 +20,11 @@ export class RepoMirrorWatcher {
     pending = new Map();
     projectRoot;
     wikiRoot;
+    ignorePatterns;
     constructor(opts) {
         this.projectRoot = resolve(opts.projectRoot);
         this.wikiRoot = resolve(opts.wikiRoot);
+        this.ignorePatterns = loadIgnorePatterns(this.projectRoot);
     }
     async start() {
         if (this.watcher)
@@ -44,17 +47,22 @@ export class RepoMirrorWatcher {
                 '**/target/**',
             ],
         });
-        const isMarkdown = (path) => path.toLowerCase().endsWith('.md');
+        const shouldMirror = (path) => {
+            if (!path.toLowerCase().endsWith('.md'))
+                return false;
+            const rel = relative(this.projectRoot, resolve(path));
+            return !shouldIgnore(rel, this.ignorePatterns);
+        };
         this.watcher.on('add', (path) => {
-            if (isMarkdown(path))
+            if (shouldMirror(path))
                 this.queueMirror('copy', path);
         });
         this.watcher.on('change', (path) => {
-            if (isMarkdown(path))
+            if (shouldMirror(path))
                 this.queueMirror('copy', path);
         });
         this.watcher.on('unlink', (path) => {
-            if (isMarkdown(path))
+            if (shouldMirror(path))
                 this.queueMirror('remove', path);
         });
         this.watcher.on('error', (err) => {

package/dist/ingest/repo-mirror.js.map

@@ -1 +1 @@
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package/dist/init/ignore.d.ts

@@ -0,0 +1,29 @@
+export interface IgnorePattern {
+    /** The original pattern string (for debugging) */
+    raw: string;
+    /** Whether this is a negation pattern (starts with !) */
+    negate: boolean;
+    /** The test function */
+    test: (relativePath: string) => boolean;
+}
+/**
+ * Load ignore patterns from `.pinakesignore` in the project root,
+ * merged with built-in defaults. User patterns override defaults.
+ */
+export declare function loadIgnorePatterns(projectRoot: string): IgnorePattern[];
+/**
+ * Create a default `.pinakesignore` in the project root if one doesn't exist.
+ * Called during serve startup alongside .gitignore generation.
+ */
+export declare function ensurePinakesIgnoreFile(projectRoot: string): void;
+/**
+ * Remove wiki files that match the current ignore patterns.
+ * Called when `.pinakesignore` changes to clean up previously-copied files.
+ */
+export declare function cleanIgnoredFromWiki(_projectRoot: string, wikiRoot: string, patterns: IgnorePattern[]): number;
+/**
+ * Check if a relative path should be ignored based on the patterns.
+ * Later patterns (including negations) override earlier ones.
+ */
+export declare function shouldIgnore(relativePath: string, patterns: IgnorePattern[]): boolean;
+//# sourceMappingURL=ignore.d.ts.map

package/dist/init/ignore.d.ts.map

@@ -0,0 +1 @@
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package/dist/init/ignore.js

@@ -0,0 +1,212 @@
+import { existsSync, readdirSync, readFileSync, rmSync, writeFileSync } from 'node:fs';
+import { basename, join, relative, resolve } from 'node:path';
+import { logger } from '../observability/logger.js';
+// .pinakesignore — filter which repo .md files get copied into the wiki.
+//
+// Supports a subset of .gitignore syntax:
+//   dir/          → ignore everything under this top-level directory
+//   ** /dir/      → ignore this directory name at any depth
+//   ** /dir/**    → same as above
+//   dir/**        → same as dir/
+//   filename.md   → ignore files with this exact name anywhere
+//   *.ext         → ignore files with this extension
+//   !pattern      → re-include a previously ignored pattern
+//   # lines       → comments
+//   blank lines   → ignored
+// Built-in defaults — applied before .pinakesignore patterns.
+// These filter out source-code directories whose READMEs are typically
+// boilerplate and not useful project documentation.
+const BUILTIN_IGNORE = `
+# Source code directories — their .md files are usually boilerplate
+**/src/
+**/lib/
+**/pkg/
+**/cmd/
+**/internal/
+**/test/
+**/tests/
+**/spec/
+**/fixtures/
+**/testdata/
+**/mocks/
+**/__tests__/
+**/__mocks__/
+
+# Build & tooling
+**/bin/
+**/scripts/
+**/tools/
+**/hack/
+**/.changeset/
+
+# Language-specific source trees
+**/crates/
+**/packages/
+**/apps/
+
+# UI/frontend source
+**/components/
+**/pages/
+**/views/
+**/layouts/
+**/public/
+
+# Examples & evals (usually not core docs)
+**/examples/
+**/evals/
+**/benchmarks/
+**/samples/
+`;
+/**
+ * Load ignore patterns from `.pinakesignore` in the project root,
+ * merged with built-in defaults. User patterns override defaults.
+ */
+export function loadIgnorePatterns(projectRoot) {
+    const patterns = [];
+    // Built-in defaults first
+    patterns.push(...parsePatterns(BUILTIN_IGNORE));
+    // User overrides from .pinakesignore
+    const ignorePath = resolve(projectRoot, '.pinakesignore');
+    if (existsSync(ignorePath)) {
+        const content = readFileSync(ignorePath, 'utf-8');
+        patterns.push(...parsePatterns(content));
+    }
+    return patterns;
+}
+const DEFAULT_PINAKESIGNORE = `# .pinakesignore — controls which repo .md files get copied into the wiki.
+# Uses .gitignore-style patterns. Built-in defaults already exclude common
+# source directories (src/, bin/, crates/, examples/, etc.).
+# Add project-specific patterns below.
+
+# To re-include a directory excluded by defaults, use negation:
+# !**/src/
+
+# Project-specific ignores:
+`;
+/**
+ * Create a default `.pinakesignore` in the project root if one doesn't exist.
+ * Called during serve startup alongside .gitignore generation.
+ */
+export function ensurePinakesIgnoreFile(projectRoot) {
+    const ignorePath = resolve(projectRoot, '.pinakesignore');
+    if (existsSync(ignorePath))
+        return;
+    writeFileSync(ignorePath, DEFAULT_PINAKESIGNORE, 'utf-8');
+}
+/**
+ * Remove wiki files that match the current ignore patterns.
+ * Called when `.pinakesignore` changes to clean up previously-copied files.
+ */
+export function cleanIgnoredFromWiki(_projectRoot, wikiRoot, patterns) {
+    let removed = 0;
+    function walkWiki(dir) {
+        let entries;
+        try {
+            entries = readdirSync(dir, { withFileTypes: true });
+        }
+        catch {
+            return;
+        }
+        for (const entry of entries) {
+            const full = join(dir, entry.name);
+            if (entry.isDirectory()) {
+                walkWiki(full);
+                // Clean up empty dirs after removing files
+                try {
+                    const remaining = readdirSync(full);
+                    if (remaining.length === 0)
+                        rmSync(full, { recursive: true });
+                }
+                catch { /* ignore */ }
+            }
+            else if (entry.isFile() && entry.name.endsWith('.md')) {
+                const relFromWiki = relative(wikiRoot, full);
+                if (shouldIgnore(relFromWiki, patterns)) {
+                    rmSync(full);
+                    removed++;
+                    logger.debug({ path: relFromWiki }, 'removed ignored file from wiki');
+                }
+            }
+        }
+    }
+    walkWiki(wikiRoot);
+    return removed;
+}
+/**
+ * Check if a relative path should be ignored based on the patterns.
+ * Later patterns (including negations) override earlier ones.
+ */
+export function shouldIgnore(relativePath, patterns) {
+    // Normalize: ensure forward slashes, no leading ./
+    const normalized = relativePath.replace(/\\/g, '/').replace(/^\.\//, '');
+    let ignored = false;
+    for (const pattern of patterns) {
+        if (pattern.test(normalized)) {
+            ignored = !pattern.negate;
+        }
+    }
+    return ignored;
+}
+// ---------------------------------------------------------------------------
+// Pattern parsing
+// ---------------------------------------------------------------------------
+function parsePatterns(content) {
+    const patterns = [];
+    for (let line of content.split('\n')) {
+        line = line.trim();
+        if (line === '' || line.startsWith('#'))
+            continue;
+        const negate = line.startsWith('!');
+        const raw = line;
+        if (negate)
+            line = line.slice(1);
+        const test = compilePattern(line);
+        if (test) {
+            patterns.push({ raw, negate, test });
+        }
+    }
+    return patterns;
+}
+function compilePattern(pattern) {
+    // `**/dir/` or `**/dir/**` → directory name anywhere in path
+    const anyDirMatch = pattern.match(/^\*\*\/([^/*]+)\/(\*\*)?$/);
+    if (anyDirMatch) {
+        const dirName = anyDirMatch[1];
+        return (p) => {
+            const segments = p.split('/');
+            // Check if any segment (except the last, which is the filename) matches
+            return segments.slice(0, -1).includes(dirName);
+        };
+    }
+    // `dir/` or `dir/**` → top-level directory
+    const topDirMatch = pattern.match(/^([^/*]+)\/(\*\*)?$/);
+    if (topDirMatch) {
+        const dirName = topDirMatch[1];
+        return (p) => p.startsWith(dirName + '/');
+    }
+    // `*.ext` → extension match
+    if (pattern.startsWith('*.') && !pattern.includes('/')) {
+        const ext = pattern.slice(1); // includes the dot
+        return (p) => p.endsWith(ext);
+    }
+    // bare name (no slashes, no wildcards) → matches as basename OR directory prefix
+    // e.g. "oidc-proxy" matches both "oidc-proxy/README.md" and "path/to/oidc-proxy"
+    if (!pattern.includes('/') && !pattern.includes('*')) {
+        return (p) => {
+            if (basename(p) === pattern)
+                return true;
+            const segments = p.split('/');
+            return segments.slice(0, -1).includes(pattern);
+        };
+    }
+    // `dir/subdir/` → prefix match
+    if (pattern.endsWith('/') && !pattern.includes('*')) {
+        return (p) => p.startsWith(pattern) || p.startsWith(pattern.slice(0, -1) + '/');
+    }
+    // Fallback: treat as a prefix
+    if (!pattern.includes('*')) {
+        return (p) => p.startsWith(pattern) || p === pattern;
+    }
+    return null; // unsupported pattern — skip silently
+}
+//# sourceMappingURL=ignore.js.map

package/dist/init/ignore.js.map

@@ -0,0 +1 @@
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package/dist/init/scanner.d.ts

@@ -1,8 +1,10 @@
 /**
- * Scan a project directory for markdown files, respecting .gitignore.
+ * Scan a project directory for markdown files, respecting .gitignore
+ * and `.pinakesignore`.
  *
  * Primary strategy: `git ls-files` (fast, respects .gitignore).
  * Fallback: recursive walk with hardcoded excludes (non-git repos).
+ * Both paths filter results through `.pinakesignore` + built-in defaults.
  *
  * Returns absolute paths, sorted deterministically.
  */

package/dist/init/scanner.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"scanner.d.ts","sourceRoot":"","sources":["../../src/init/scanner.ts"],"names":[],"mappings":"AAMA;;;;;;;GAOG;AACH,wBAAgB,qBAAqB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,EAAE,CAOnE"}
+{"version":3,"file":"scanner.d.ts","sourceRoot":"","sources":["../../src/init/scanner.ts"],"names":[],"mappings":"AAOA;;;;;;;;;GASG;AACH,wBAAgB,qBAAqB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,EAAE,CA0BnE"}

package/dist/init/scanner.js

@@ -1,23 +1,38 @@
 import { execFileSync } from 'node:child_process';
 import { readdirSync } from 'node:fs';
-import { resolve } from 'node:path';
+import { relative, resolve } from 'node:path';
 import { logger } from '../observability/logger.js';
+import { loadIgnorePatterns, shouldIgnore } from './ignore.js';
 /**
- * Scan a project directory for markdown files, respecting .gitignore.
+ * Scan a project directory for markdown files, respecting .gitignore
+ * and `.pinakesignore`.
  *
  * Primary strategy: `git ls-files` (fast, respects .gitignore).
  * Fallback: recursive walk with hardcoded excludes (non-git repos).
+ * Both paths filter results through `.pinakesignore` + built-in defaults.
  *
  * Returns absolute paths, sorted deterministically.
  */
 export function scanRepoMarkdownFiles(projectRoot) {
+    const absRoot = resolve(projectRoot);
+    const patterns = loadIgnorePatterns(absRoot);
+    let files;
     try {
-        return scanViaGit(projectRoot);
+        files = scanViaGit(absRoot);
     }
     catch {
         logger.debug({ projectRoot }, 'git ls-files failed, falling back to recursive walk');
-        return scanViaWalk(projectRoot);
+        files = scanViaWalk(absRoot);
     }
+    // Apply .pinakesignore filtering
+    const filtered = files.filter((absPath) => {
+        const rel = relative(absRoot, absPath);
+        return !shouldIgnore(rel, patterns);
+    });
+    if (filtered.length < files.length) {
+        logger.info({ total: files.length, kept: filtered.length, ignored: files.length - filtered.length }, '.pinakesignore: filtered repo markdown files');
+    }
+    return filtered;
 }
 // ---------------------------------------------------------------------------
 // Git-based scan

package/dist/init/scanner.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@pella-labs/pinakes",
-  "version": "0.3.5",
+  "version": "0.3.7",
   "description": "Local stdio MCP server that indexes a Karpathy-style two-level knowledge wiki into SQLite and exposes it to a coding LLM via Cloudflare-style code-mode.",
   "type": "module",
   "bin": {