@pella-labs/pinakes 0.3.1 → 0.3.3

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Files changed (8) hide show
  1. package/README.md +42 -33
  2. package/dist/cli/rebuild.d.ts.map +1 -1
  3. package/dist/cli/rebuild.js +7 -2
  4. package/dist/cli/rebuild.js.map +1 -1
  5. package/dist/cli/serve.d.ts.map +1 -1
  6. package/dist/cli/serve.js +17 -6
  7. package/dist/cli/serve.js.map +1 -1
  8. package/package.json +1 -1
package/README.md CHANGED
@@ -1,14 +1,16 @@
1
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  # @pella-labs/pinakes
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2
 
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- Local stdio MCP server that indexes a [Karpathy-style](https://gist.github.com/karpathy/442a6bf555914893e9891c11519de94f) two-level knowledge wiki (project + personal) into SQLite and exposes it to any coding LLM via [Cloudflare-style code-mode](https://blog.cloudflare.com/code-mode-mcp/).
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+ Local stdio MCP server that indexes a [Karpathy-style](https://gist.github.com/karpathy/442a6bf555914893e9891c11519de94f) two-level knowledge base (project + personal) into SQLite and exposes it to any coding LLM via [Cloudflare-style code-mode](https://blog.cloudflare.com/code-mode-mcp/).
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  **Two tools. One process. Works with any MCP client.**
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- - `search` — hybrid FTS5 + vector search ranked by Reciprocal Rank Fusion
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- - `execute` — run JS in a QuickJS sandbox with `pinakes.project.*` bindings for search, graph traversal, wiki writes, and more
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+ - `knowledge_search` — hybrid FTS5 + vector search ranked by Reciprocal Rank Fusion
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+ - `knowledge_query` — run JS in a QuickJS sandbox with `pinakes.project.*` bindings for search, graph traversal, wiki writes, and more
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  Markdown is canonical. SQLite is the index. If the index is corrupted or lost, rebuild it from markdown.
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+ All data is stored under `~/.pinakes/` — nothing is written to your project directory.
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+
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  Requires **Node.js 24 LTS** (`^24.10.0`).
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  ## Install
@@ -16,17 +18,18 @@ Requires **Node.js 24 LTS** (`^24.10.0`).
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  ### Claude Code
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  ```bash
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- claude mcp add pinakes -- npx @pella-labs/pinakes serve --wiki-path ./wiki
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+ claude mcp add project-docs -- npx @pella-labs/pinakes serve --wiki-path ./docs
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  ```
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- Or add to `.claude/settings.json`:
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+ Or add to `.mcp.json`:
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  ```json
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  {
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  "mcpServers": {
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- "pinakes": {
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+ "project-docs": {
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+ "type": "stdio",
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  "command": "npx",
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- "args": ["@pella-labs/pinakes", "serve", "--wiki-path", "./wiki"]
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+ "args": ["-y", "@pella-labs/pinakes", "serve", "--wiki-path", "./docs"]
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  }
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  }
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  }
@@ -38,21 +41,21 @@ Add to `~/.config/goose/profiles.yaml`:
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  ```yaml
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  extensions:
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- pinakes:
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- name: pinakes
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+ project-docs:
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+ name: project-docs
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  type: stdio
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  cmd: npx
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  args:
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  - "@pella-labs/pinakes"
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  - serve
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  - --wiki-path
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- - ./wiki
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+ - ./docs
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  ```
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  ### Codex
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  ```bash
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- export CODEX_MCP_SERVERS='{"pinakes":{"command":"npx","args":["@pella-labs/pinakes","serve","--wiki-path","./wiki"]}}'
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+ export CODEX_MCP_SERVERS='{"project-docs":{"command":"npx","args":["-y","@pella-labs/pinakes","serve","--wiki-path","./docs"]}}'
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  ```
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  ### OpenCode
@@ -62,9 +65,9 @@ Add to `opencode.json`:
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  ```json
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  {
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  "mcp": {
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- "pinakes": {
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+ "project-docs": {
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  "command": "npx",
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- "args": ["@pella-labs/pinakes", "serve", "--wiki-path", "./wiki"]
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+ "args": ["-y", "@pella-labs/pinakes", "serve", "--wiki-path", "./docs"]
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  }
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  }
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  }
@@ -77,9 +80,9 @@ Add to Cursor settings (Settings > MCP Servers):
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  ```json
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  {
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  "mcpServers": {
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- "pinakes": {
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+ "project-docs": {
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  "command": "npx",
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- "args": ["@pella-labs/pinakes", "serve", "--wiki-path", "./wiki"]
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+ "args": ["-y", "@pella-labs/pinakes", "serve", "--wiki-path", "./docs"]
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  }
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  }
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  }
@@ -88,47 +91,50 @@ Add to Cursor settings (Settings > MCP Servers):
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  ## Quick start
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  ```bash
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- # Create a wiki directory in your project
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- mkdir -p wiki
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- echo "# My Project" > wiki/overview.md
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+ # Create a docs directory in your project
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+ mkdir -p docs
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+ echo "# My Project" > docs/overview.md
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97
 
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- # Test it directly
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- npx @pella-labs/pinakes serve --wiki-path ./wiki
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+ # Start the server (indexes all .md files, watches for changes)
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+ npx @pella-labs/pinakes serve --wiki-path ./docs
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  ```
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- The server indexes all `.md` files in the wiki directory, watches for changes, and serves them over stdio.
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+ If you omit `--wiki-path`, the server creates a wiki directory at `~/.pinakes/projects/<project>/wiki/` automatically.
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  ## Example queries
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  ### Search
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107
 
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  ```
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- search({ query: "authentication flow", scope: "project" })
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+ knowledge_search({ query: "authentication flow", scope: "project" })
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  ```
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  ### Execute (code-mode)
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  ```javascript
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- // Browse the wiki index
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- execute({ code: `return pinakes.project.index()` })
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+ // Browse the knowledge base index
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+ knowledge_query({ code: `return pinakes.project.index()` })
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  // Full-text search
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- execute({ code: `return pinakes.project.fts("bcrypt")` })
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+ knowledge_query({ code: `return pinakes.project.fts("bcrypt")` })
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120
 
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  // Node lookup + neighbors
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- execute({ code: `
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+ knowledge_query({ code: `
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  const node = pinakes.project.get("sha1-id-here");
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  const neighbors = pinakes.project.neighbors(node.id, { depth: 2 });
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  return { node, neighbors };
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  ` })
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127
 
125
- // Write a wiki page
126
- execute({ code: `
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+ // Write a knowledge page
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+ knowledge_query({ code: `
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  return pinakes.project.write("decisions/use-postgres.md", "# Use PostgreSQL\\nWe chose Postgres because...");
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  ` })
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+ // Find under-documented areas
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+ knowledge_query({ code: `return pinakes.project.gaps()` })
135
+
130
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  // Query across both scopes
131
- execute({
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+ knowledge_query({
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  code: `return pinakes.project.hybrid("deploy process")`,
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  scope: "both"
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  })
@@ -136,11 +142,13 @@ execute({
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142
 
137
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  ## CLI commands
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144
 
145
+ All data is stored under `~/.pinakes/` (override with `PINAKES_ROOT`). Project data lives at `~/.pinakes/projects/<mangled-path>/`.
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+
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  ```bash
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- npx @pella-labs/pinakes serve --wiki-path <dir> # Start the stdio MCP server
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- npx @pella-labs/pinakes rebuild --wiki-path <dir> # Full rebuild from markdown
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+ npx @pella-labs/pinakes serve [--wiki-path <dir>] # Start the stdio MCP server
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+ npx @pella-labs/pinakes rebuild [--wiki-path <dir>] # Full rebuild from markdown
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  npx @pella-labs/pinakes status # Health check + row counts
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- npx @pella-labs/pinakes audit [--tail] [--n 20] # Tail the audit log
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+ npx @pella-labs/pinakes audit [--n 20] # Tail the audit log
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  npx @pella-labs/pinakes purge --scope <s> --confirm # Delete a scope's DB
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  npx @pella-labs/pinakes export --scope <s> [--out f] # Dump nodes + edges as JSON
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  npx @pella-labs/pinakes import --scope <s> --in f # Restore from dump
@@ -178,10 +186,11 @@ Changing the embedder requires a full rebuild (`pinakes rebuild`) since the vect
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  - **Single process**: MCP server, file watcher, SQLite writer, read pool, embedder, and QuickJS sandbox all in one Node process
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  - **Single writer, multi reader**: one writer connection + 2 reader connections per DB, WAL mode
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- - **Two-level KG**: project wiki (`./wiki/`) + personal wiki (`~/.pinakes/wiki/`), fully isolated by default
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+ - **Two-level KG**: project knowledge base + personal knowledge base (`~/.pinakes/wiki/`), fully isolated by default
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  - **Privacy invariant**: personal KG bindings are only injected when `scope` includes `'personal'`
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  - **Budget gate**: every response stays under `max_tokens` (default 5000, hard cap 25000)
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  - **Deterministic IDs**: `sha1(scope + ':' + source_uri + ':' + section_path)` means re-indexing is idempotent
193
+ - **Centralized storage**: all data under `~/.pinakes/`, project paths mirrored as `~/.pinakes/projects/<mangled-path>/`
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194
 
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  ## Development
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196
 
package/dist/cli/rebuild.d.ts.map CHANGED
@@ -1 +1 @@
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package/dist/cli/rebuild.js CHANGED
@@ -3,7 +3,8 @@ import { closeDb, openDb } from '../db/client.js';
3
3
  import { IngesterService } from '../ingest/ingester.js';
4
4
  import { listMarkdownFiles } from '../ingest/manifest.js';
5
5
  import { logger } from '../observability/logger.js';
6
- import { resolveAbs, projectWikiPath as defaultProjectWikiPath, projectDbPath as defaultProjectDbPath, personalWikiPath as defaultPersonalWikiPath, personalDbPath as defaultPersonalDbPath, } from '../paths.js';
6
+ import { resolve } from 'node:path';
7
+ import { resolveAbs, projectWikiPath as defaultProjectWikiPath, projectDbPath as defaultProjectDbPath, personalWikiPath as defaultPersonalWikiPath, personalDbPath as defaultPersonalDbPath, projectDataDir, pinakesRoot, } from '../paths.js';
7
8
  import { TransformersEmbedder } from '../retrieval/embedder.js';
8
9
  /**
9
10
  * Run a full-rebuild against one or both scopes. Returns a list of summaries
@@ -33,6 +34,7 @@ export async function rebuildCommand(options) {
33
34
  wikiDir: projectWiki,
34
35
  dbPath: projectDbPath,
35
36
  embedder,
37
+ manifestPath: resolve(projectDataDir(projectRoot), 'manifest.json'),
36
38
  });
37
39
  summaries.push(summary);
38
40
  }
@@ -42,6 +44,7 @@ export async function rebuildCommand(options) {
42
44
  wikiDir: profileWiki,
43
45
  dbPath: profileDbPath,
44
46
  embedder,
47
+ manifestPath: resolve(pinakesRoot(), 'manifest.json'),
45
48
  });
46
49
  summaries.push(summary);
47
50
  }
@@ -68,7 +71,9 @@ async function rebuildOneScope(args) {
68
71
  logger.warn({ err }, 'legacy URI cleanup failed — continuing');
69
72
  }
70
73
  }
71
- const ingester = new IngesterService(bundle, embedder, scope, wikiDir);
74
+ const ingester = new IngesterService(bundle, embedder, scope, wikiDir, {
75
+ manifestPath: args.manifestPath,
76
+ });
72
77
  const files = listMarkdownFiles(wikiDir);
73
78
  let nodes = 0;
74
79
  let chunksAdded = 0;
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1
+ {"version":3,"file":"rebuild.js","sourceRoot":"","sources":["../../src/cli/rebuild.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AAErC,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,iBAAiB,CAAC;AAClD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,iBAAiB,EAAE,MAAM,uBAAuB,CAAC;AAC1D,OAAO,EAAE,MAAM,EAAE,MAAM,4BAA4B,CAAC;AACpD,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,EACL,UAAU,EACV,eAAe,IAAI,sBAAsB,EACzC,aAAa,IAAI,oBAAoB,EACrC,gBAAgB,IAAI,uBAAuB,EAC3C,cAAc,IAAI,qBAAqB,EACvC,cAAc,EACd,WAAW,GACZ,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,oBAAoB,EAAiB,MAAM,0BAA0B,CAAC;AAoD/E;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,OAAuB;IAC1D,MAAM,SAAS,GAAqB,EAAE,CAAC;IAEvC,MAAM,WAAW,GAAG,UAAU,CAAC,OAAO,CAAC,WAAW,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC;IACrE,MAAM,WAAW,GAAG,UAAU,CAAC,OAAO,CAAC,QAAQ,IAAI,sBAAsB,CAAC,WAAW,CAAC,CAAC,CAAC;IACxF,IAAI,CAAC,UAAU,CAAC,WAAW,CAAC,EAAE,CAAC;QAC7B,MAAM,IAAI,KAAK,CAAC,6BAA6B,WAAW,EAAE,CAAC,CAAC;IAC9D,CAAC;IACD,MAAM,aAAa,GAAG,UAAU,CAAC,OAAO,CAAC,MAAM,IAAI,oBAAoB,CAAC,WAAW,CAAC,CAAC,CAAC;IAEtF,MAAM,WAAW,GAAG,UAAU,CAAC,OAAO,CAAC,WAAW,IAAI,uBAAuB,EAAE,CAAC,CAAC;IACjF,MAAM,aAAa,GAAG,UAAU,CAAC,OAAO,CAAC,aAAa,IAAI,qBAAqB,EAAE,CAAC,CAAC;IAEnF,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,IAAI,MAAM,CAAC;IACtC,MAAM,cAAc,GAAG,KAAK,KAAK,SAAS,IAAI,KAAK,KAAK,MAAM,CAAC;IAC/D,MAAM,eAAe,GACnB,CAAC,KAAK,KAAK,UAAU,IAAI,KAAK,KAAK,MAAM,CAAC,IAAI,UAAU,CAAC,WAAW,CAAC,CAAC;IAExE,6DAA6D;IAC7D,MAAM,QAAQ,GAAG,OAAO,CAAC,QAAQ,IAAI,IAAI,oBAAoB,EAAE,CAAC;IAChE,MAAM,QAAQ,CAAC,MAAM,EAAE,CAAC;IAExB,IAAI,cAAc,EAAE,CAAC;QACnB,MAAM,OAAO,GAAG,MAAM,eAAe,CAAC;YACpC,KAAK,EAAE,SAAS;YAChB,OAAO,EAAE,WAAW;YACpB,MAAM,EAAE,aAAa;YACrB,QAAQ;YACR,YAAY,EAAE,OAAO,CAAC,cAAc,CAAC,WAAW,CAAC,EAAE,eAAe,CAAC;SACpE,CAAC,CAAC;QACH,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAC1B,CAAC;IAED,IAAI,eAAe,EAAE,CAAC;QACpB,MAAM,OAAO,GAAG,MAAM,eAAe,CAAC;YACpC,KAAK,EAAE,UAAU;YACjB,OAAO,EAAE,WAAW;YACpB,MAAM,EAAE,aAAa;YACrB,QAAQ;YACR,YAAY,EAAE,OAAO,CAAC,WAAW,EAAE,EAAE,eAAe,CAAC;SACtD,CAAC,CAAC;QACH,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAC1B,CAAC;IAED,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,KAAK,UAAU,eAAe,CAAC,IAM9B;IACC,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAC;IAClD,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAEtB,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC;IAC9B,IAAI,CAAC;QACH,2EAA2E;QAC3E,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,IAAI,CAAC;gBACH,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM;qBAC3B,OAAO,CAAC,kGAAkG,CAAC;qBAC3G,GAAG,EAAqB,CAAC;gBAC5B,IAAI,QAAQ,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC;oBACrB,MAAM,CAAC,IAAI,CAAC,EAAE,KAAK,EAAE,QAAQ,CAAC,GAAG,EAAE,EAAE,6CAA6C,CAAC,CAAC;oBACpF,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,0LAA0L,CAAC,CAAC;oBAC/M,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,kFAAkF,CAAC,CAAC;gBACzG,CAAC;YACH,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,MAAM,CAAC,IAAI,CAAC,EAAE,GAAG,EAAE,EAAE,wCAAwC,CAAC,CAAC;YACjE,CAAC;QACH,CAAC;QAED,MAAM,QAAQ,GAAG,IAAI,eAAe,CAAC,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,OAAO,EAAE;YACrE,YAAY,EAAE,IAAI,CAAC,YAAY;SAChC,CAAC,CAAC;QACH,MAAM,KAAK,GAAG,iBAAiB,CAAC,OAAO,CAAC,CAAC;QAEzC,IAAI,KAAK,GAAG,CAAC,CAAC;QACd,IAAI,WAAW,GAAG,CAAC,CAAC;QACpB,IAAI,aAAa,GAAG,CAAC,CAAC;QACtB,IAAI,aAAa,GAAG,CAAC,CAAC;QAEtB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;YACzB,IAAI,CAAC;gBACH,MAAM,MAAM,GAAG,MAAM,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;gBAC/C,KAAK,IAAI,MAAM,CAAC,aAAa,CAAC;gBAC9B,WAAW,IAAI,MAAM,CAAC,YAAY,CAAC;gBACnC,aAAa,IAAI,MAAM,CAAC,cAAc,CAAC;gBACvC,aAAa,IAAI,MAAM,CAAC,cAAc,CAAC;YACzC,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,MAAM,CAAC,KAAK,CAAC,EAAE,GAAG,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,gCAAgC,CAAC,CAAC;gBACrE,wEAAwE;gBACxE,sDAAsD;YACxD,CAAC;QACH,CAAC;QAED,OAAO;YACL,KAAK;YACL,KAAK,EAAE,KAAK,CAAC,MAAM;YACnB,KAAK;YACL,YAAY,EAAE,WAAW;YACzB,cAAc,EAAE,aAAa;YAC7B,cAAc,EAAE,aAAa;YAC7B,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,EAAE;SAC5B,CAAC;IACJ,CAAC;YAAS,CAAC;QACT,OAAO,CAAC,MAAM,CAAC,CAAC;IAClB,CAAC;AACH,CAAC"}
package/dist/cli/serve.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"serve.d.ts","sourceRoot":"","sources":["../../src/cli/serve.ts"],"names":[],"mappings":";AAKA,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AA2BpE;;;;;;;;;;;;;;;;;;;GAmBG;AAEH,MAAM,WAAW,YAAY;IAC3B,8GAA8G;IAC9G,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,kFAAkF;IAClF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,iFAAiF;IACjF,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,2DAA2D;IAC3D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0DAA0D;IAC1D,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB;AAED,UAAU,YAAY;IACpB,MAAM,EAAE,SAAS,CAAC;IAClB,QAAQ,EAAE,CAAC,MAAM,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;CAC7C;AAED;;;;GAIG;AACH,wBAAsB,WAAW,CAAC,OAAO,EAAE,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,CA+K9E;AAED;;;GAGG;AACH,wBAAsB,YAAY,CAAC,OAAO,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC,CAiBvE"}
1
+ {"version":3,"file":"serve.d.ts","sourceRoot":"","sources":["../../src/cli/serve.ts"],"names":[],"mappings":";AAKA,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AA4BpE;;;;;;;;;;;;;;;;;;;GAmBG;AAEH,MAAM,WAAW,YAAY;IAC3B,8GAA8G;IAC9G,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,kFAAkF;IAClF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,iFAAiF;IACjF,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,2DAA2D;IAC3D,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,0DAA0D;IAC1D,aAAa,CAAC,EAAE,MAAM,CAAC;CACxB;AAED,UAAU,YAAY;IACpB,MAAM,EAAE,SAAS,CAAC;IAClB,QAAQ,EAAE,CAAC,MAAM,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;CAC7C;AAED;;;;GAIG;AACH,wBAAsB,WAAW,CAAC,OAAO,EAAE,YAAY,GAAG,OAAO,CAAC,YAAY,CAAC,CAuL9E;AAED;;;GAGG;AACH,wBAAsB,YAAY,CAAC,OAAO,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC,CAiBvE"}
package/dist/cli/serve.js CHANGED
@@ -1,6 +1,6 @@
1
1
  #!/usr/bin/env node
2
2
  import { randomUUID } from 'node:crypto';
3
- import { existsSync, mkdirSync, renameSync, readdirSync, cpSync } from 'node:fs';
3
+ import { existsSync, mkdirSync, renameSync, readdirSync, cpSync, rmSync } from 'node:fs';
4
4
  import { dirname, resolve } from 'node:path';
5
5
  import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
6
6
  import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
@@ -11,7 +11,7 @@ import { IngesterService } from '../ingest/ingester.js';
11
11
  import { checkConsistency, listMarkdownFiles } from '../ingest/manifest.js';
12
12
  import { executeToolConfig, makeExecuteHandler } from '../mcp/tools/execute.js';
13
13
  import { searchToolConfig, makeSearchHandler } from '../mcp/tools/search.js';
14
- import { resolveAbs, projectWikiPath as defaultProjectWikiPath, projectDbPath as defaultProjectDbPath, projectAuditJsonlPath, personalWikiPath as defaultPersonalWikiPath, personalDbPath as defaultPersonalDbPath, personalAuditJsonlPath, projectDataDir, } from '../paths.js';
14
+ import { resolveAbs, projectWikiPath as defaultProjectWikiPath, projectDbPath as defaultProjectDbPath, projectAuditJsonlPath, personalWikiPath as defaultPersonalWikiPath, personalDbPath as defaultPersonalDbPath, personalAuditJsonlPath, projectDataDir, pinakesRoot, } from '../paths.js';
15
15
  import { writeAuditRow } from '../observability/audit.js';
16
16
  import { child, logger } from '../observability/logger.js';
17
17
  import { installSighupHandler, metrics } from '../observability/metrics.js';
@@ -32,8 +32,12 @@ export async function buildServer(options) {
32
32
  const projectDb = resolveAbs(options.dbPath ?? defaultProjectDbPath(projectRoot));
33
33
  migrateLegacyInProject(projectRoot, projectDb);
34
34
  const profileWiki = resolveAbs(options.profilePath ?? defaultPersonalWikiPath());
35
+ if (!existsSync(profileWiki)) {
36
+ mkdirSync(profileWiki, { recursive: true });
37
+ logger.info({ path: profileWiki }, 'created personal wiki directory');
38
+ }
35
39
  const profileDbPath = resolveAbs(options.profileDbPath ?? defaultPersonalDbPath());
36
- const enablePersonal = existsSync(profileWiki);
40
+ const enablePersonal = true;
37
41
  // Step 1: open DBs
38
42
  const projectBundle = openDb(projectDb);
39
43
  const personalBundle = enablePersonal ? openDb(profileDbPath) : null;
@@ -41,9 +45,13 @@ export async function buildServer(options) {
41
45
  const embedder = createEmbedder();
42
46
  await embedder.warmup();
43
47
  // Step 3: ingesters per scope
44
- const projectIngester = new IngesterService(projectBundle, embedder, 'project', projectWiki);
48
+ const projectIngester = new IngesterService(projectBundle, embedder, 'project', projectWiki, {
49
+ manifestPath: resolve(projectDataDir(projectRoot), 'manifest.json'),
50
+ });
45
51
  const personalIngester = personalBundle
46
- ? new IngesterService(personalBundle, embedder, 'personal', profileWiki)
52
+ ? new IngesterService(personalBundle, embedder, 'personal', profileWiki, {
53
+ manifestPath: resolve(pinakesRoot(), 'manifest.json'),
54
+ })
47
55
  : null;
48
56
  // Step 4: startup consistency check — re-ingest any stale files.
49
57
  // Pass the DB writer so checkConsistency can cross-validate manifest claims
@@ -89,7 +97,7 @@ export async function buildServer(options) {
89
97
  'Only fall back to Grep/Read/Glob after checking the knowledge base, or when you need ' +
90
98
  'to find exact symbols, read specific source files, or make code changes. ' +
91
99
  `Use \`${executeToolName}\` for advanced operations: graph traversal, gap detection, writing new knowledge.`;
92
- const mcp = new McpServer({ name: serverName, version: '0.3.1' }, { capabilities: { tools: {} }, instructions });
100
+ const mcp = new McpServer({ name: serverName, version: '0.3.3' }, { capabilities: { tools: {} }, instructions });
93
101
  mcp.registerTool(searchToolName, searchToolConfig, instrumentHandler(searchToolName, makeSearchHandler({
94
102
  repository, embedder, bundle: projectBundle,
95
103
  personalBundle: personalBundle ?? undefined,
@@ -273,6 +281,9 @@ function migrateLegacyInProject(projectRoot, newDbPath) {
273
281
  logger.info({ from: src, to: dst }, 'migrated legacy .pinakes entry');
274
282
  }
275
283
  }
284
+ // Remove old .pinakes/ after successful migration
285
+ rmSync(legacyPinakesDir, { recursive: true, force: true });
286
+ logger.info({ path: legacyPinakesDir }, 'removed legacy .pinakes/ directory');
276
287
  }
277
288
  catch (err) {
278
289
  logger.warn({ err, from: legacyPinakesDir, to: targetDir }, 'legacy .pinakes/ migration failed — continuing');
package/dist/cli/serve.js.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@pella-labs/pinakes",
3
- "version": "0.3.1",
3
+ "version": "0.3.3",
4
4
  "description": "Local stdio MCP server that indexes a Karpathy-style two-level knowledge wiki into SQLite and exposes it to a coding LLM via Cloudflare-style code-mode.",
5
5
  "type": "module",
6
6
  "bin": {