@pcircle/memesh 4.5.1 → 4.6.0

package/dist/storage/schema.js

@@ -0,0 +1,274 @@
+import { insertFtsRow } from './fts-index.js';
+import { parseSqliteUtcMs } from '../core/time-utils.js';
+export const SCHEMA_SQL = `
+CREATE TABLE IF NOT EXISTS entities (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  name TEXT NOT NULL UNIQUE,
+  type TEXT NOT NULL,
+  created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+  metadata JSON
+);
+
+CREATE TABLE IF NOT EXISTS observations (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  entity_id INTEGER NOT NULL,
+  content TEXT NOT NULL,
+  created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+  FOREIGN KEY (entity_id) REFERENCES entities(id) ON DELETE CASCADE
+);
+
+CREATE TABLE IF NOT EXISTS relations (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  from_entity_id INTEGER NOT NULL,
+  to_entity_id INTEGER NOT NULL,
+  relation_type TEXT NOT NULL,
+  metadata JSON,
+  created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+  FOREIGN KEY (from_entity_id) REFERENCES entities(id) ON DELETE CASCADE,
+  FOREIGN KEY (to_entity_id) REFERENCES entities(id) ON DELETE CASCADE,
+  UNIQUE(from_entity_id, to_entity_id, relation_type)
+);
+
+CREATE TABLE IF NOT EXISTS tags (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  entity_id INTEGER NOT NULL,
+  tag TEXT NOT NULL,
+  FOREIGN KEY (entity_id) REFERENCES entities(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_tags_entity ON tags(entity_id);
+CREATE INDEX IF NOT EXISTS idx_tags_tag ON tags(tag);
+-- The tags dedup DELETE + idx_tags_entity_tag_unique creation live in
+-- ensureTagsUniqueIndex(), AFTER this exec — the DELETE is a one-time
+-- migration, and a DML statement in this string made every open start a
+-- write transaction even when it deleted nothing (same reader-breaking
+-- pattern as the hook_runs_since note below).
+CREATE INDEX IF NOT EXISTS idx_observations_entity ON observations(entity_id);
+CREATE INDEX IF NOT EXISTS idx_relations_from ON relations(from_entity_id);
+CREATE INDEX IF NOT EXISTS idx_relations_to ON relations(to_entity_id);
+CREATE INDEX IF NOT EXISTS idx_entities_type_created ON entities(type, created_at);
+
+-- Migration markers and small bits of persistent state (index segmentation
+-- version, embedding dimension, pending-reindex flags, backfill markers).
+--
+-- This used to be created ad hoc by each helper that needed it — four inline
+-- CREATE TABLE IF NOT EXISTS copies in src/db.ts, none of them visible to
+-- schema checks. A column added to one copy would not have been caught. It
+-- also meant the hook-side schema had no metadata table at all, so hooks
+-- could not participate in migrations even in principle.
+CREATE TABLE IF NOT EXISTS memesh_metadata (
+  key   TEXT PRIMARY KEY,
+  value TEXT NOT NULL
+);
+
+-- Proof that a capture hook actually RAN. Nothing else in this schema can
+-- give it: every other signal is "a row was written", and "the hook ran and
+-- found nothing worth saving" is the healthy case that produces no row at
+-- all. So a quiet day and a dead capture loop were byte-identical in the
+-- database, and the one doctor message that had to cover both cried wolf on
+-- the first and stayed silent on the second.
+--
+-- Written by the three hooks that hold a read-write handle (Stop, PreCompact,
+-- PostToolUse), each calling recordHookRun() at its own SUCCESSFUL exit —
+-- after capture, not at open. Stamping at open certified the wrong thing: a
+-- hook that opened the database and then died mid-capture looked alive for a
+-- day. "Successful" is precise: a completed capture, or a well-formed
+-- payload the hook correctly decided not to capture (dedup, low-signal
+-- session). A malformed payload (schema-flip shapes) and a write that did
+-- not land both leave no stamp — either would make the heartbeat mask the
+-- exact dropout it exists to expose. The recall-side hooks open read-only
+-- and deliberately do not appear here: their liveness answers a different
+-- question, and giving them a write handle would put a lock acquisition on
+-- the SessionStart hot path.
+--
+-- One row per hook, upserted. It does not grow.
+CREATE TABLE IF NOT EXISTS hook_runs (
+  hook        TEXT PRIMARY KEY,
+  last_run_at TIMESTAMP NOT NULL,
+  run_count   INTEGER NOT NULL DEFAULT 0
+);
+
+-- The 'hook_runs_since' metadata key (when this database first became able
+-- to record hook runs) is stamped by ensureHookRunsSince() AFTER this exec,
+-- NOT here. It used to be an INSERT OR IGNORE in this string, and that made
+-- every open — including opens that only ever read — start a write
+-- transaction: an INSERT statement takes the WAL writer lock even when
+-- OR IGNORE ends up changing nothing. Two states regressed from "reads work"
+-- to "open throws": a peer holding the writer lock past busy_timeout, and a
+-- read-only database FILE (measured: "attempt to write a readonly database"
+-- killed recall along with capture). The helper SELECTs first and writes
+-- only when the key is genuinely absent — once per database lifetime.
+`;
+export const FTS_SQL = `
+CREATE VIRTUAL TABLE IF NOT EXISTS entities_fts USING fts5(
+  name, observations, content='',
+  tokenize='unicode61 remove_diacritics 1'
+);
+
+-- Term -> document-count view over the index above. Stores nothing of its own;
+-- it exists so search() can drop query terms that appear in most of the corpus,
+-- which are the ones BM25 already scores near zero. See dropUbiquitousTerms().
+CREATE VIRTUAL TABLE IF NOT EXISTS fts_vocab USING fts5vocab(entities_fts, 'row');
+`;
+export function safeAlter(db, sql) {
+    try {
+        db.exec(sql);
+    }
+    catch (e) {
+        const msg = e instanceof Error ? e.message : String(e);
+        if (!/duplicate column name/i.test(msg))
+            throw e;
+    }
+}
+export function migrateEntitiesSchema(db) {
+    const entityColumns = new Set(db.prepare("PRAGMA table_info(entities)").all().map((c) => c.name));
+    if (!entityColumns.has('status')) {
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN status TEXT NOT NULL DEFAULT 'active'");
+        db.exec("CREATE INDEX IF NOT EXISTS idx_entities_status ON entities(status)");
+    }
+    if (!entityColumns.has('access_count')) {
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN access_count INTEGER DEFAULT 0");
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN last_accessed_at TIMESTAMP");
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN confidence REAL DEFAULT 1.0");
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN valid_from TIMESTAMP");
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN valid_until TIMESTAMP");
+    }
+    if (!entityColumns.has('namespace')) {
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN namespace TEXT DEFAULT 'personal'");
+        db.exec("CREATE INDEX IF NOT EXISTS idx_entities_namespace ON entities(namespace)");
+    }
+    if (!entityColumns.has('recall_hits')) {
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN recall_hits INTEGER DEFAULT 0");
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN recall_misses INTEGER DEFAULT 0");
+    }
+    if (!entityColumns.has('title')) {
+        safeAlter(db, "ALTER TABLE entities ADD COLUMN title TEXT");
+    }
+}
+export function ensureTagsUniqueIndex(db) {
+    try {
+        const present = db
+            .prepare("SELECT 1 FROM sqlite_master WHERE type = 'index' AND name = 'idx_tags_entity_tag_unique'")
+            .get();
+        if (present)
+            return;
+        db.exec('BEGIN IMMEDIATE; ' +
+            'DELETE FROM tags WHERE id NOT IN (SELECT MIN(id) FROM tags GROUP BY entity_id, tag); ' +
+            'CREATE UNIQUE INDEX IF NOT EXISTS idx_tags_entity_tag_unique ON tags(entity_id, tag); ' +
+            'COMMIT;');
+    }
+    catch (err) {
+        try {
+            db.exec('ROLLBACK');
+        }
+        catch { }
+        try {
+            process.stderr.write(`MeMesh: could not create the tags unique index (${err instanceof Error ? err.message : String(err)}). ` +
+                `Reads are unaffected; the next open retries the dedup and index together.\n`);
+        }
+        catch { }
+    }
+}
+export function ensureHookRunsSince(db) {
+    try {
+        const row = db
+            .prepare("SELECT value FROM memesh_metadata WHERE key = 'hook_runs_since'")
+            .get();
+        if (row) {
+            const then = parseSqliteUtcMs(row.value ?? '');
+            if (then !== null && then <= Date.now() + 5 * 60 * 1000)
+                return;
+            db
+                .prepare("UPDATE memesh_metadata SET value = datetime('now') WHERE key = 'hook_runs_since'")
+                .run();
+            return;
+        }
+        db
+            .prepare("INSERT OR IGNORE INTO memesh_metadata (key, value) VALUES ('hook_runs_since', datetime('now'))")
+            .run();
+    }
+    catch (err) {
+        try {
+            process.stderr.write(`MeMesh: could not stamp hook_runs_since (${err instanceof Error ? err.message : String(err)}). ` +
+                `Reads are unaffected; doctor's hook-activity tracking starts once the database is writable.\n`);
+        }
+        catch { }
+    }
+}
+export function isTransientDbError(err) {
+    const code = err?.code ?? '';
+    const msg = err?.message ?? '';
+    return (/SQLITE_BUSY|SQLITE_LOCKED|SQLITE_PROTOCOL/.test(code) ||
+        /database is locked|database table is locked|locking protocol/i.test(msg));
+}
+export const MIGRATION_RETRY_BACKOFF_MS = 24 * 60 * 60 * 1000;
+export function runOnceMigration(db, opts) {
+    const { key, version, describe, migrate } = opts;
+    const attemptKey = `${key}_last_attempt`;
+    const readMarker = (k) => db.prepare('SELECT value FROM memesh_metadata WHERE key = ?').get(k)?.value;
+    const stored = readMarker(key);
+    if (stored && parseInt(stored, 10) >= version)
+        return false;
+    const lastAttempt = readMarker(attemptKey);
+    if (lastAttempt && Date.now() - parseInt(lastAttempt, 10) < MIGRATION_RETRY_BACKOFF_MS) {
+        return false;
+    }
+    try {
+        db.transaction(() => {
+            const current = readMarker(key);
+            if (current && parseInt(current, 10) >= version)
+                return;
+            migrate(db, current ? parseInt(current, 10) : 0);
+            db.prepare('INSERT OR REPLACE INTO memesh_metadata (key, value) VALUES (?, ?)').run(key, String(version));
+            db.prepare('DELETE FROM memesh_metadata WHERE key = ?').run(attemptKey);
+        }).immediate();
+        return true;
+    }
+    catch (err) {
+        if (isTransientDbError(err)) {
+            process.stderr.write(`MeMesh: ${describe} deferred (${err instanceof Error ? err.message : String(err)}). ` +
+                `Another process holds the database; it will run on the next start.\n`);
+            return false;
+        }
+        try {
+            db.prepare('INSERT OR REPLACE INTO memesh_metadata (key, value) VALUES (?, ?)').run(attemptKey, String(Date.now()));
+        }
+        catch { }
+        process.stderr.write(`MeMesh: ${describe} failed (${err instanceof Error ? err.message : String(err)}). ` +
+            `Your memories are unaffected — this rebuilds a derived index. ` +
+            `It will retry in 24h, or run 'memesh reindex --fts' to retry now.\n`);
+        return false;
+    }
+}
+export const FTS_SEGMENTATION_VERSION = 3;
+export const FTS_REBUILD_PAGE_SIZE = 500;
+export function rebuildFtsIndex(db) {
+    db.exec("INSERT INTO entities_fts (entities_fts) VALUES('delete-all')");
+    const page = db.prepare(`SELECT e.id, e.name, e.title, COALESCE(group_concat(o.content, ' ' ORDER BY o.id), '') AS obs
+       FROM entities e
+       LEFT JOIN observations o ON o.entity_id = e.id
+      WHERE e.status = 'active' AND e.id > ?
+      GROUP BY e.id
+      ORDER BY e.id
+      LIMIT ?`);
+    let afterId = 0;
+    for (;;) {
+        const rows = page.all(afterId, FTS_REBUILD_PAGE_SIZE);
+        if (rows.length === 0)
+            break;
+        for (const row of rows)
+            insertFtsRow(db, row.id, row.name, row.obs, row.title);
+        afterId = rows[rows.length - 1].id;
+        if (rows.length < FTS_REBUILD_PAGE_SIZE)
+            break;
+    }
+}
+export function ensureFtsSegmentation(db) {
+    runOnceMigration(db, {
+        key: 'fts_segmentation_version',
+        version: FTS_SEGMENTATION_VERSION,
+        describe: 'search index rebuild',
+        migrate: rebuildFtsIndex,
+    });
+}
+//# sourceMappingURL=schema.js.map

package/dist/storage/schema.js.map

@@ -0,0 +1 @@
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package/dist/transports/cli/cli.d.ts

@@ -1,6 +1,3 @@
 #!/usr/bin/env node
-export declare function buildConfigListing(config: Record<string, unknown>): Array<{
-    key: string;
-    value: string;
-}>;
+export {};
 //# sourceMappingURL=cli.d.ts.map

package/dist/transports/cli/cli.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../../../src/transports/cli/cli.ts"],"names":[],"mappings":";AAgqBA,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,KAAK,CAAC;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAQzG"}
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../../../src/transports/cli/cli.ts"],"names":[],"mappings":""}