@pcircle/memesh 4.1.2 → 4.1.4

package/dist/db.js

@@ -5,6 +5,7 @@ import os from 'os';
 import fs from 'fs';
 import { runAutoDecay } from './core/lifecycle.js';
 import { getEmbeddingDimension } from './core/config.js';
+import { computeSignalScore } from './core/signal-scorer.js';
 let db = null;
 const SCHEMA_SQL = `
 CREATE TABLE IF NOT EXISTS entities (
@@ -111,6 +112,8 @@ export function openDatabase(dbPath) {
         db.exec("ALTER TABLE entities ADD COLUMN recall_misses INTEGER DEFAULT 0");
     }
     runAutoDecay(db);
+    backfillSignalScores(db);
+    ensureDreamProposalsTable(db);
     sqliteVec.load(db);
     const targetDim = getEmbeddingDimension();
     ensureVecTable(db, targetDim);
@@ -134,6 +137,7 @@ function ensureVecTable(db, targetDim) {
             `MeMesh: Old embeddings deleted. Run 'memesh reindex' to regenerate vectors for all entities.\n` +
             `MeMesh: Without reindex, only newly accessed entities will be embedded.\n`);
         db.exec('DROP TABLE entities_vec');
+        db.prepare("INSERT OR REPLACE INTO memesh_metadata (key, value) VALUES ('pending_reindex', ?)").run(JSON.stringify({ from: currentDim, to: targetDim, droppedAt: new Date().toISOString() }));
     }
     db.exec(`
     CREATE VIRTUAL TABLE IF NOT EXISTS entities_vec USING vec0(
@@ -142,6 +146,90 @@ function ensureVecTable(db, targetDim) {
   `);
     db.prepare("INSERT OR REPLACE INTO memesh_metadata (key, value) VALUES ('embedding_dimension', ?)").run(String(targetDim));
 }
+export function getPendingReindexInfo() {
+    if (!db)
+        return null;
+    try {
+        const row = db.prepare("SELECT value FROM memesh_metadata WHERE key = 'pending_reindex'").get();
+        return row ? JSON.parse(row.value) : null;
+    }
+    catch {
+        return null;
+    }
+}
+export function clearPendingReindexFlag() {
+    if (!db)
+        return;
+    db.prepare("DELETE FROM memesh_metadata WHERE key = 'pending_reindex'").run();
+}
+function ensureDreamProposalsTable(db) {
+    db.exec(`
+    CREATE TABLE IF NOT EXISTS dream_proposals (
+      id INTEGER PRIMARY KEY AUTOINCREMENT,
+      project TEXT NOT NULL,
+      cluster_key TEXT NOT NULL,
+      source_ids TEXT NOT NULL,
+      proposed_digest TEXT NOT NULL,
+      llm_model TEXT,
+      prompt_version TEXT NOT NULL DEFAULT 'v1',
+      status TEXT NOT NULL DEFAULT 'pending',
+      reason TEXT,
+      created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+      reviewed_at TIMESTAMP
+    );
+    CREATE INDEX IF NOT EXISTS idx_dream_proposals_status ON dream_proposals(status);
+    CREATE INDEX IF NOT EXISTS idx_dream_proposals_project ON dream_proposals(project);
+  `);
+}
+function backfillSignalScores(db) {
+    db.exec(`
+    CREATE TABLE IF NOT EXISTS memesh_metadata (
+      key   TEXT PRIMARY KEY,
+      value TEXT NOT NULL
+    )
+  `);
+    const MARKER = 'signal_score_backfill_v1';
+    const done = db.prepare("SELECT value FROM memesh_metadata WHERE key = ?").get(MARKER);
+    if (done)
+        return;
+    const rows = db.prepare('SELECT id, name, type, metadata FROM entities').all();
+    if (rows.length === 0) {
+        db.prepare("INSERT OR REPLACE INTO memesh_metadata (key, value) VALUES (?, ?)").run(MARKER, new Date().toISOString());
+        return;
+    }
+    const obsStmt = db.prepare('SELECT content FROM observations WHERE entity_id = ?');
+    const tagStmt = db.prepare('SELECT tag FROM tags WHERE entity_id = ?');
+    const updateStmt = db.prepare('UPDATE entities SET metadata = ? WHERE id = ?');
+    const tx = db.transaction(() => {
+        let scored = 0;
+        let skipped = 0;
+        for (const row of rows) {
+            let metadata = {};
+            try {
+                metadata = row.metadata ? JSON.parse(row.metadata) : {};
+            }
+            catch {
+                metadata = {};
+            }
+            if (typeof metadata.signal_score === 'number') {
+                skipped++;
+                continue;
+            }
+            const observations = obsStmt.all(row.id).map(o => o.content);
+            const tags = tagStmt.all(row.id).map(t => t.tag);
+            metadata.signal_score = computeSignalScore({
+                type: row.type,
+                name: row.name,
+                observations,
+                tags,
+            });
+            updateStmt.run(JSON.stringify(metadata), row.id);
+            scored++;
+        }
+        db.prepare("INSERT OR REPLACE INTO memesh_metadata (key, value) VALUES (?, ?)").run(MARKER, JSON.stringify({ at: new Date().toISOString(), scored, skipped }));
+    });
+    tx();
+}
 export function closeDatabase() {
     if (db) {
         db.close();
@@ -153,4 +241,7 @@ export function getDatabase() {
         throw new Error('Database not opened');
     return db;
 }
+export function isDatabaseOpen() {
+    return db !== null;
+}
 //# sourceMappingURL=db.js.map

package/dist/db.js.map

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package/dist/knowledge-graph.d.ts

@@ -1,6 +1,7 @@
 import Database from 'better-sqlite3';
 export type { Entity, Relation, CreateEntityInput, SearchOptions } from './core/types.js';
 import type { Entity, Relation, CreateEntityInput, SearchOptions } from './core/types.js';
+import { type TrackAccessOptions } from './storage/conflicts.js';
 export declare class KnowledgeGraph {
     private db;
     constructor(db: Database.Database);
@@ -10,9 +11,10 @@ export declare class KnowledgeGraph {
         tags?: string[];
         metadata?: any;
         namespace?: string;
+        trustOverride?: 'trusted' | 'untrusted';
     }): number;
     createEntitiesBatch(entities: CreateEntityInput[]): void;
-    createRelation(fromName: string, toName: string, relationType: string, metadata?: any): void;
+    createRelation(fromName: string, toName: string, relationType: string): void;
     getEntity(name: string): Entity | null;
     getEntitiesByIds(ids: number[], opts?: {
         includeArchived?: boolean;
@@ -21,7 +23,7 @@ export declare class KnowledgeGraph {
     }): Entity[];
     getRelations(entityName: string): Relation[];
     search(query?: string, opts?: SearchOptions): Entity[];
-    trackAccess(entityIds: number[]): void;
+    trackAccess(entityIds: number[], opts?: TrackAccessOptions): void;
     findConflicts(entityNames: string[]): string[];
     listRecent(limit?: number, includeArchived?: boolean, namespace?: string): Entity[];
     private listRecentByTag;
@@ -35,7 +37,9 @@ export declare class KnowledgeGraph {
         removed: boolean;
         remainingObservations: number;
     };
-    private deleteEntity;
+    deleteEntity(name: string): {
+        deleted: boolean;
+    };
     private parseMetadata;
     private rebuildFts;
 }

package/dist/knowledge-graph.d.ts.map

@@ -1 +1 @@
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package/dist/knowledge-graph.js

@@ -1,5 +1,6 @@
 import { findConflicts, trackAccess } from './storage/conflicts.js';
 import { insertFtsRow, removeFromFts } from './storage/fts-index.js';
+import { computeSignalScore } from './core/signal-scorer.js';
 export class KnowledgeGraph {
     db;
     constructor(db) {
@@ -18,9 +19,18 @@ export class KnowledgeGraph {
             .run(nextMetadata ? JSON.stringify(nextMetadata) : null, name);
     }
     createEntity(name, type, opts) {
+        const incomingMetadata = (opts?.metadata && typeof opts.metadata === 'object') ? { ...opts.metadata } : {};
+        if (incomingMetadata.signal_score === undefined) {
+            incomingMetadata.signal_score = computeSignalScore({
+                type,
+                name,
+                observations: opts?.observations ?? [],
+                tags: opts?.tags ?? [],
+            });
+        }
         const insertResult = this.db
             .prepare('INSERT OR IGNORE INTO entities (name, type, metadata, namespace) VALUES (?, ?, ?, ?)')
-            .run(name, type, opts?.metadata ? JSON.stringify(opts.metadata) : null, opts?.namespace ?? 'personal');
+            .run(name, type, JSON.stringify(incomingMetadata), opts?.namespace ?? 'personal');
         const isNewEntity = insertResult.changes > 0;
         const row = this.db
             .prepare('SELECT id, status FROM entities WHERE name = ?')
@@ -37,6 +47,20 @@ export class KnowledgeGraph {
             : this.db
                 .prepare('SELECT content FROM observations WHERE entity_id = ?')
                 .all(entityId);
+        if (!isNewEntity && !wasArchived) {
+            const prevSet = new Set(prevObs.map((o) => o.content));
+            const introducesNewObservation = (opts?.observations ?? []).some((o) => !prevSet.has(o));
+            const trustFromMetadata = opts?.metadata && typeof opts.metadata === 'object'
+                ? opts.metadata.trust
+                : undefined;
+            const incomingTrust = opts?.trustOverride ?? trustFromMetadata;
+            const isTrusted = incomingTrust === undefined || incomingTrust === 'trusted';
+            if (introducesNewObservation && isTrusted) {
+                this.db
+                    .prepare('UPDATE entities SET confidence = MIN(confidence + 0.05, 1.0) WHERE id = ?')
+                    .run(entityId);
+            }
+        }
         const prevObsText = isNewEntity || wasArchived
             ? undefined
             : prevObs.map((o) => o.content).join(' ');
@@ -68,7 +92,7 @@ export class KnowledgeGraph {
         });
         txn();
     }
-    createRelation(fromName, toName, relationType, metadata) {
+    createRelation(fromName, toName, relationType) {
         const fromRow = this.db
             .prepare('SELECT id FROM entities WHERE name = ?')
             .get(fromName);
@@ -82,12 +106,12 @@ export class KnowledgeGraph {
             throw new Error(`Entity not found: ${toName}`);
         }
         this.db
-            .prepare('INSERT OR IGNORE INTO relations (from_entity_id, to_entity_id, relation_type, metadata) VALUES (?, ?, ?, ?)')
-            .run(fromRow.id, toRow.id, relationType, metadata ? JSON.stringify(metadata) : null);
+            .prepare('INSERT OR IGNORE INTO relations (from_entity_id, to_entity_id, relation_type) VALUES (?, ?, ?)')
+            .run(fromRow.id, toRow.id, relationType);
     }
     getEntity(name) {
         const row = this.db
-            .prepare('SELECT id, name, type, created_at, metadata, status, access_count, last_accessed_at, confidence, valid_from, valid_until, namespace FROM entities WHERE name = ?')
+            .prepare('SELECT id, name, type, created_at, metadata, status, access_count, last_accessed_at, confidence, namespace FROM entities WHERE name = ?')
             .get(name);
         if (!row)
             return null;
@@ -113,8 +137,6 @@ export class KnowledgeGraph {
             access_count: row.access_count ?? 0,
             last_accessed_at: row.last_accessed_at ?? undefined,
             confidence: row.confidence ?? 1.0,
-            valid_from: row.valid_from ?? undefined,
-            valid_until: row.valid_until ?? undefined,
             namespace: row.namespace ?? 'personal',
         };
     }
@@ -128,7 +150,7 @@ export class KnowledgeGraph {
         if (opts?.namespace)
             params.push(opts.namespace);
         const entityRows = this.db
-            .prepare(`SELECT id, name, type, created_at, metadata, status, access_count, last_accessed_at, confidence, valid_from, valid_until, namespace
+            .prepare(`SELECT id, name, type, created_at, metadata, status, access_count, last_accessed_at, confidence, namespace
          FROM entities WHERE id IN (${placeholders}) ${statusFilter} ${namespaceFilter}`)
             .all(...params);
         const entityMap = new Map();
@@ -155,7 +177,7 @@ export class KnowledgeGraph {
         }
         const relRows = this.db
             .prepare(`SELECT r.from_entity_id, e_from.name AS "from", e_to.name AS "to",
-                r.relation_type AS type, r.metadata
+                r.relation_type AS type
          FROM relations r
          JOIN entities e_from ON r.from_entity_id = e_from.id
          JOIN entities e_to ON r.to_entity_id = e_to.id
@@ -169,7 +191,6 @@ export class KnowledgeGraph {
                 from: row.from,
                 to: row.to,
                 type: row.type,
-                metadata: row.metadata ? JSON.parse(row.metadata) : undefined,
             });
         }
         const results = [];
@@ -195,8 +216,6 @@ export class KnowledgeGraph {
                 access_count: row.access_count ?? 0,
                 last_accessed_at: row.last_accessed_at ?? undefined,
                 confidence: row.confidence ?? 1.0,
-                valid_from: row.valid_from ?? undefined,
-                valid_until: row.valid_until ?? undefined,
                 namespace: row.namespace ?? 'personal',
             });
         }
@@ -204,7 +223,7 @@ export class KnowledgeGraph {
     }
     getRelations(entityName) {
         const rows = this.db
-            .prepare(`SELECT e_from.name AS "from", e_to.name AS "to", r.relation_type AS type, r.metadata
+            .prepare(`SELECT e_from.name AS "from", e_to.name AS "to", r.relation_type AS type
          FROM relations r
          JOIN entities e_from ON r.from_entity_id = e_from.id
          JOIN entities e_to ON r.to_entity_id = e_to.id
@@ -214,7 +233,6 @@ export class KnowledgeGraph {
             from: r.from,
             to: r.to,
             type: r.type,
-            metadata: r.metadata ? JSON.parse(r.metadata) : undefined,
         }));
     }
     search(query, opts) {
@@ -307,11 +325,11 @@ export class KnowledgeGraph {
             results.push(...archivedEntities);
         }
         const entityIds = results.map((e) => e.id);
-        this.trackAccess(entityIds);
+        this.trackAccess(entityIds, { incrementHits: true });
         return results;
     }
-    trackAccess(entityIds) {
-        trackAccess(this.db, entityIds);
+    trackAccess(entityIds, opts = {}) {
+        trackAccess(this.db, entityIds, opts);
     }
     findConflicts(entityNames) {
         return findConflicts(this.db, entityNames);
@@ -354,7 +372,7 @@ export class KnowledgeGraph {
             .map((r) => this.getEntity(r.name))
             .filter((e) => e !== null);
         const entityIds = results.map((e) => e.id);
-        this.trackAccess(entityIds);
+        this.trackAccess(entityIds, { incrementHits: true });
         return results;
     }
     clearEntityData(name) {
@@ -429,6 +447,13 @@ export class KnowledgeGraph {
             .all(row.id);
         const obsText = allObs.map((o) => o.content).join(' ');
         removeFromFts(this.db, row.id, name, obsText);
+        try {
+            this.db
+                .prepare('DELETE FROM entities_vec WHERE rowid = ?')
+                .run(BigInt(row.id));
+        }
+        catch {
+        }
         this.db.prepare('DELETE FROM entities WHERE id = ?').run(row.id);
         return { deleted: true };
     }

package/dist/knowledge-graph.js.map

@@ -1 +1 @@
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package/dist/skills-manifest.json

@@ -1,26 +1,26 @@
 {
   "schema": "memesh.skills-manifest/v1",
-  "generated_at": "2026-05-05T17:22:02.035Z",
+  "generated_at": "2026-05-08T19:53:39.351Z",
   "entries": [
     {
       "path": ".mcp.json",
-      "sha256": "a5a50fce8d7eae2889a6563634d121336168bdfc9ff9008b13508868f2d92ed6",
-      "bytes": 175
+      "sha256": "b281e74df86f9630eb8bb2f242b00a06ec170c71f274f92885c6ddd6cbb1bf6a",
+      "bytes": 78
     },
     {
       "path": "hooks/hooks.json",
-      "sha256": "f549f7dd0ec59f0f08c659e31fa788ca6b654ef4f682fc9923dff3fd69f42496",
-      "bytes": 1501
+      "sha256": "ea54bdce8d52e14acdc3e5ddf3c7f241e6cfb45952ca720bbd4618d5bf94a241",
+      "bytes": 1767
     },
     {
       "path": "plugin.json",
-      "sha256": "02c411212bafa6abd9bfc02dca234fc7239ae92684ad3bb973a6e5cf06415e61",
+      "sha256": "fdfbf953aec4d0033c96ebd76e386eac0b4b2ccc06a76b8cfb98ce48dc4fd248",
       "bytes": 540
     },
     {
       "path": "scripts/hooks/_shared.js",
-      "sha256": "d0f06ed5037842f6a7506243ea286c72e588f17df39a2bead235f57503053b8e",
-      "bytes": 9411
+      "sha256": "c33eeb858630e389ec314354a2864d2dcdc8caf76db32c8281abb05e4b5ebace",
+      "bytes": 19360
     },
     {
       "path": "scripts/hooks/post-commit.js",
@@ -34,8 +34,8 @@
     },
     {
       "path": "scripts/hooks/pre-compact.js",
-      "sha256": "d37861b793941de8ae3caeac381e6305769e65c5bc3f6e3b9d1a4e03a83e620b",
-      "bytes": 4877
+      "sha256": "c2d9597269c5d71d989709de0fb36f660b072a27a8fec16613c6737cedc66f83",
+      "bytes": 5492
     },
     {
       "path": "scripts/hooks/pre-edit-recall.js",
@@ -44,13 +44,18 @@
     },
     {
       "path": "scripts/hooks/session-start.js",
-      "sha256": "fffd4c886ab67cfe9598b299d48f47ae7078ec54a5657c2679fe777979b9e9b8",
-      "bytes": 13767
+      "sha256": "5f3326e940a531f20d3b0397633871fd2d89db38f854cdb2e36b82b62e557475",
+      "bytes": 30076
     },
     {
       "path": "scripts/hooks/session-summary.js",
-      "sha256": "f2bef09e08d2002319b2d82d30cc5a3520d3936f3b09d495812226a720d6b942",
-      "bytes": 11511
+      "sha256": "5642b655d609099cf4bfb8ebae081385f169e5c55453202d291ae710be509f16",
+      "bytes": 16405
+    },
+    {
+      "path": "scripts/hooks/user-prompt-intent.js",
+      "sha256": "75143339c275ca3ec034d04454bd1e02281dcb892f4cb1515508a912466d699b",
+      "bytes": 7457
     },
     {
       "path": "skills/agentic-orchestration/SKILL.md",
@@ -59,13 +64,13 @@
     },
     {
       "path": "skills/memesh-review/SKILL.md",
-      "sha256": "f7725e255499b591df6b301cc0bbed6184279f1d43476c7dca28fb81465077f5",
-      "bytes": 2841
+      "sha256": "ed58c6dc0131ab332ac3c5bb7963476f169d723eee2587621328415402a36f01",
+      "bytes": 3588
     },
     {
       "path": "skills/memesh/SKILL.md",
-      "sha256": "f20f2e5696c4f90fd6e2de2179e3e0a13cd946c8456e46f54fba001210d2838a",
-      "bytes": 5985
+      "sha256": "3e594f4db08ad51e8ff74426ce909ab9eda6fa13ee1a2b21ec3c7f29b7dd1a07",
+      "bytes": 6546
     }
   ]
 }

package/dist/storage/conflicts.d.ts

@@ -1,4 +1,7 @@
 import type Database from 'better-sqlite3';
 export declare function findConflicts(db: Database.Database, entityNames: string[]): string[];
-export declare function trackAccess(db: Database.Database, entityIds: number[]): void;
+export interface TrackAccessOptions {
+    incrementHits?: boolean;
+}
+export declare function trackAccess(db: Database.Database, entityIds: number[], opts?: TrackAccessOptions): void;
 //# sourceMappingURL=conflicts.d.ts.map

package/dist/storage/conflicts.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"conflicts.d.ts","sourceRoot":"","sources":["../../src/storage/conflicts.ts"],"names":[],"mappings":"AAcA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAY3C,wBAAgB,aAAa,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,WAAW,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAqBpF;AAUD,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,IAAI,CAY5E"}
+{"version":3,"file":"conflicts.d.ts","sourceRoot":"","sources":["../../src/storage/conflicts.ts"],"names":[],"mappings":"AAcA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAY3C,wBAAgB,aAAa,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,WAAW,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAqBpF;AAED,MAAM,WAAW,kBAAkB;IASjC,aAAa,CAAC,EAAE,OAAO,CAAC;CACzB;AAcD,wBAAgB,WAAW,CACzB,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,SAAS,EAAE,MAAM,EAAE,EACnB,IAAI,GAAE,kBAAuB,GAC5B,IAAI,CAaN"}

package/dist/storage/conflicts.js

@@ -17,11 +17,14 @@ export function findConflicts(db, entityNames) {
     }
     return conflicts;
 }
-export function trackAccess(db, entityIds) {
+export function trackAccess(db, entityIds, opts = {}) {
     if (entityIds.length === 0)
         return;
     const now = new Date().toISOString();
-    const stmt = db.prepare('UPDATE entities SET access_count = access_count + 1, last_accessed_at = ? WHERE id = ?');
+    const sql = opts.incrementHits
+        ? 'UPDATE entities SET access_count = access_count + 1, recall_hits = recall_hits + 1, last_accessed_at = ? WHERE id = ?'
+        : 'UPDATE entities SET access_count = access_count + 1, last_accessed_at = ? WHERE id = ?';
+    const stmt = db.prepare(sql);
     const txn = db.transaction(() => {
         for (const id of entityIds) {
             stmt.run(now, id);

package/dist/storage/conflicts.js.map

@@ -1 +1 @@
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