@pcircle/memesh 2.6.6 → 2.7.0

package/dist/knowledge-graph/index.js

@@ -3,8 +3,12 @@ import { NotFoundError, ValidationError } from '../errors/index.js';
 import { SimpleDatabaseFactory } from '../config/simple-config.js';
 import { logger } from '../utils/logger.js';
 import { QueryCache } from '../db/QueryCache.js';
-import { safeJsonParse } from '../utils/json.js';
+import { safeJsonParse, safeJsonStringify } from '../utils/json.js';
 import { getDataPath, getDataDirectory } from '../utils/PathResolver.js';
+import { validateNonEmptyString } from '../utils/validation.js';
+const MAX_ENTITY_NAME_LENGTH = 512;
+const VALID_RELATION_TYPE_PATTERN = /^[a-zA-Z_][a-zA-Z0-9_-]*$/;
+const CONTROL_CHAR_PATTERN = /[\x00-\x08\x0B\x0C\x0E-\x1F\x7F\x80-\x9F]/;
 export class KnowledgeGraph {
     db;
     queryCache;
@@ -16,6 +20,36 @@ export class KnowledgeGraph {
             debug: false,
         });
     }
+    validateEntityName(name) {
+        validateNonEmptyString(name, 'Entity name');
+        if (name.length > MAX_ENTITY_NAME_LENGTH) {
+            throw new ValidationError(`Entity name exceeds maximum length of ${MAX_ENTITY_NAME_LENGTH} characters (got ${name.length})`, {
+                component: 'KnowledgeGraph',
+                method: 'validateEntityName',
+                nameLength: name.length,
+                maxLength: MAX_ENTITY_NAME_LENGTH,
+            });
+        }
+        if (CONTROL_CHAR_PATTERN.test(name)) {
+            throw new ValidationError('Entity name must not contain control characters', {
+                component: 'KnowledgeGraph',
+                method: 'validateEntityName',
+                name: name.slice(0, 100),
+            });
+        }
+    }
+    validateRelationType(relationType) {
+        validateNonEmptyString(relationType, 'Relation type');
+        if (!VALID_RELATION_TYPE_PATTERN.test(relationType)) {
+            throw new ValidationError(`Relation type must contain only alphanumeric characters, underscores, and hyphens, ` +
+                `and must start with a letter or underscore. Got: "${relationType}"`, {
+                component: 'KnowledgeGraph',
+                method: 'validateRelationType',
+                relationType,
+                pattern: VALID_RELATION_TYPE_PATTERN.source,
+            });
+        }
+    }
     static async create(dbPath) {
         const defaultPath = getDataPath('knowledge-graph.db');
         const resolvedPath = dbPath || defaultPath;
@@ -106,52 +140,252 @@ export class KnowledgeGraph {
       CREATE INDEX IF NOT EXISTS idx_tags_entity_tag ON tags(entity_id, tag);
     `;
         this.db.exec(schema);
+        const fts5Schema = `
+      -- FTS5 virtual table for entities full-text search
+      CREATE VIRTUAL TABLE IF NOT EXISTS entities_fts USING fts5(
+        name,
+        observations,
+        content='',
+        tokenize='unicode61 remove_diacritics 1'
+      );
+    `;
+        this.db.exec(fts5Schema);
+        this.runMigrations();
+    }
+    runMigrations() {
+        try {
+            const tableInfo = this.db.pragma('table_info(entities)');
+            const hasContentHash = tableInfo.some((col) => col.name === 'content_hash');
+            if (!hasContentHash) {
+                logger.info('[KG] Running migration: Adding content_hash column to entities table');
+                this.db.exec(`
+          ALTER TABLE entities ADD COLUMN content_hash TEXT;
+        `);
+                this.db.exec(`
+          CREATE UNIQUE INDEX IF NOT EXISTS idx_entities_content_hash
+          ON entities(content_hash)
+          WHERE content_hash IS NOT NULL;
+        `);
+                logger.info('[KG] Migration complete: content_hash column added with unique index');
+            }
+        }
+        catch (error) {
+            logger.error('[KG] Migration failed:', {
+                error: error instanceof Error ? error.message : String(error),
+            });
+            throw error;
+        }
+        try {
+            const ftsCount = this.db.prepare('SELECT COUNT(*) as count FROM entities_fts').get().count;
+            const entityCount = this.db.prepare('SELECT COUNT(*) as count FROM entities').get().count;
+            if (ftsCount === 0 && entityCount > 0) {
+                logger.info('[KG] Running migration: Populating FTS5 index from existing entities');
+                const CHUNK_SIZE = 500;
+                const MAX_OBSERVATIONS_PER_ENTITY = 500;
+                const MAX_OBSERVATION_LENGTH = 2000;
+                const MAX_TOTAL_LENGTH = 500000;
+                const insertStmt = this.db.prepare(`
+          INSERT INTO entities_fts(rowid, name, observations)
+          SELECT
+            e.id,
+            e.name,
+            COALESCE(
+              SUBSTR(
+                (SELECT GROUP_CONCAT(SUBSTR(content, 1, ?), ' ') FROM (
+                  SELECT content FROM observations o
+                  WHERE o.entity_id = e.id
+                  ORDER BY o.created_at DESC
+                  LIMIT ?
+                )),
+                1,
+                ?
+              ),
+              ''
+            )
+          FROM entities e
+          WHERE e.id > ? AND e.id <= ?
+        `);
+                const idRange = this.db.prepare('SELECT MIN(id) as minId, MAX(id) as maxId FROM entities').get();
+                let processedCount = 0;
+                for (let startId = idRange.minId - 1; startId < idRange.maxId; startId += CHUNK_SIZE) {
+                    const endId = startId + CHUNK_SIZE;
+                    const result = insertStmt.run(MAX_OBSERVATION_LENGTH, MAX_OBSERVATIONS_PER_ENTITY, MAX_TOTAL_LENGTH, startId, endId);
+                    processedCount += result.changes;
+                }
+                logger.info(`[KG] Migration complete: Populated FTS5 index with ${processedCount} entities`);
+            }
+        }
+        catch (error) {
+            logger.error('[KG] FTS5 population migration failed:', {
+                error: error instanceof Error ? error.message : String(error),
+            });
+        }
     }
     escapeLikePattern(pattern) {
+        if (typeof pattern !== 'string') {
+            throw new Error(`Pattern must be a string, got ${typeof pattern}`);
+        }
         return pattern
-            .replace(/\\/g, '\\\\')
-            .replace(/%/g, '\\%')
-            .replace(/_/g, '\\_')
-            .replace(/\[/g, '\\[');
+            .replace(/!/g, '!!')
+            .replace(/%/g, '!%')
+            .replace(/_/g, '!_')
+            .replace(/\[/g, '![')
+            .replace(/\]/g, '!]');
+    }
+    searchFTS5(query, limit) {
+        if (!query || query.trim() === '') {
+            return [];
+        }
+        const ftsQuery = this.prepareFTS5Query(query);
+        if (!ftsQuery) {
+            return [];
+        }
+        try {
+            const results = this.db.prepare(`
+        SELECT rowid, bm25(entities_fts, 10.0, 5.0) as rank
+        FROM entities_fts
+        WHERE entities_fts MATCH ?
+        ORDER BY rank
+        LIMIT ?
+      `).all(ftsQuery, limit);
+            return results.map(r => r.rowid);
+        }
+        catch (error) {
+            logger.warn('[KG] FTS5 search failed, will use LIKE fallback:', {
+                query,
+                ftsQuery,
+                error: error instanceof Error ? error.message : String(error)
+            });
+            return [];
+        }
+    }
+    prepareFTS5Query(query) {
+        const MAX_QUERY_LENGTH = 10000;
+        const MAX_TOKENS = 100;
+        let normalized = query.trim().replace(/\s+/g, ' ');
+        if (!normalized) {
+            return '';
+        }
+        if (normalized.length > MAX_QUERY_LENGTH) {
+            logger.warn(`[KG] FTS5 query too long (${normalized.length} chars), truncating to ${MAX_QUERY_LENGTH}`);
+            normalized = normalized.substring(0, MAX_QUERY_LENGTH);
+        }
+        let tokens = normalized.split(' ').filter(t => t.length > 0);
+        if (tokens.length === 0) {
+            return '';
+        }
+        if (tokens.length > MAX_TOKENS) {
+            logger.warn(`[KG] FTS5 query has too many tokens (${tokens.length}), using first ${MAX_TOKENS}`);
+            tokens = tokens.slice(0, MAX_TOKENS);
+        }
+        const ftsTokens = tokens
+            .filter(token => {
+            const upper = token.toUpperCase();
+            return upper !== 'AND' && upper !== 'OR' && upper !== 'NOT' && upper !== 'NEAR';
+        })
+            .map(token => {
+            const escaped = token
+                .replace(/"/g, '""')
+                .replace(/\*/g, '')
+                .replace(/\^/g, '')
+                .replace(/:/g, '')
+                .replace(/[(){}[\]]/g, '');
+            if (!escaped) {
+                return null;
+            }
+            return `"${escaped}"*`;
+        })
+            .filter((t) => t !== null);
+        if (ftsTokens.length === 0) {
+            return '';
+        }
+        return ftsTokens.join(' OR ');
     }
     createEntity(entity) {
-        const stmt = this.db.prepare(`
-      INSERT INTO entities (name, type, metadata)
-      VALUES (?, ?, json(?))
-      ON CONFLICT(name) DO UPDATE SET
-        type = excluded.type,
-        metadata = excluded.metadata
-    `);
-        stmt.run(entity.name, entity.entityType, JSON.stringify(entity.metadata || {}));
-        const actualEntity = this.db
-            .prepare('SELECT id FROM entities WHERE name = ?')
-            .get(entity.name);
-        const actualId = actualEntity.id;
-        this.db.prepare('DELETE FROM observations WHERE entity_id = ?').run(actualId);
-        this.db.prepare('DELETE FROM tags WHERE entity_id = ?').run(actualId);
-        if (entity.observations && entity.observations.length > 0) {
-            const obsStmt = this.db.prepare(`
-        INSERT INTO observations (entity_id, content)
-        VALUES (?, ?)
-      `);
-            for (const obs of entity.observations) {
-                obsStmt.run(actualId, obs);
+        this.validateEntityName(entity.name);
+        try {
+            if (entity.contentHash) {
+                const existing = this.db
+                    .prepare('SELECT name FROM entities WHERE content_hash = ?')
+                    .get(entity.contentHash);
+                if (existing && existing.name !== entity.name) {
+                    logger.info(`[KG] Deduplicated: content_hash match, using existing entity ${existing.name}`);
+                    return existing.name;
+                }
             }
+            const result = this.db.transaction(() => {
+                const stmt = this.db.prepare(`
+          INSERT INTO entities (name, type, metadata, content_hash)
+          VALUES (?, ?, json(?), ?)
+          ON CONFLICT(name) DO UPDATE SET
+            type = excluded.type,
+            metadata = excluded.metadata,
+            content_hash = excluded.content_hash
+        `);
+                stmt.run(entity.name, entity.entityType, safeJsonStringify(entity.metadata || {}, '{}'), entity.contentHash || null);
+                const actualEntity = this.db
+                    .prepare('SELECT id FROM entities WHERE name = ?')
+                    .get(entity.name);
+                const actualId = actualEntity.id;
+                this.db.prepare('DELETE FROM observations WHERE entity_id = ?').run(actualId);
+                this.db.prepare('DELETE FROM tags WHERE entity_id = ?').run(actualId);
+                if (entity.observations && entity.observations.length > 0) {
+                    const obsStmt = this.db.prepare(`
+            INSERT INTO observations (entity_id, content)
+            VALUES (?, ?)
+          `);
+                    for (const obs of entity.observations) {
+                        obsStmt.run(actualId, obs);
+                    }
+                }
+                if (entity.tags && entity.tags.length > 0) {
+                    const tagStmt = this.db.prepare(`
+            INSERT INTO tags (entity_id, tag)
+            VALUES (?, ?)
+          `);
+                    for (const tag of entity.tags) {
+                        tagStmt.run(actualId, tag);
+                    }
+                }
+                const observationsText = entity.observations ? entity.observations.join(' ') : '';
+                const existingFtsContent = this.db
+                    .prepare('SELECT name, observations FROM entities_fts WHERE rowid = ?')
+                    .get(actualId);
+                if (existingFtsContent) {
+                    this.db.prepare(`
+            INSERT INTO entities_fts(entities_fts, rowid, name, observations)
+            VALUES('delete', ?, ?, ?)
+          `).run(actualId, existingFtsContent.name, existingFtsContent.observations);
+                }
+                this.db.prepare(`
+          INSERT INTO entities_fts(rowid, name, observations)
+          VALUES (?, ?, ?)
+        `).run(actualId, entity.name, observationsText);
+                return entity.name;
+            })();
+            this.queryCache.invalidatePattern(/^entities:/);
+            logger.info(`[KG] Created entity: ${entity.name} (type: ${entity.entityType})`);
+            return result;
         }
-        if (entity.tags && entity.tags.length > 0) {
-            const tagStmt = this.db.prepare(`
-        INSERT INTO tags (entity_id, tag)
-        VALUES (?, ?)
-      `);
-            for (const tag of entity.tags) {
-                tagStmt.run(actualId, tag);
+        catch (error) {
+            if (error instanceof Error &&
+                error.message.includes('UNIQUE constraint failed') &&
+                error.message.includes('content_hash')) {
+                const existing = this.db
+                    .prepare('SELECT name FROM entities WHERE content_hash = ?')
+                    .get(entity.contentHash);
+                if (existing) {
+                    logger.warn(`[KG] Race condition detected: content_hash conflict, using existing entity ${existing.name}`);
+                    return existing.name;
+                }
             }
+            throw error;
         }
-        this.queryCache.invalidatePattern(/^entities:/);
-        logger.info(`[KG] Created entity: ${entity.name} (type: ${entity.entityType})`);
-        return actualId;
     }
     createRelation(relation) {
+        this.validateEntityName(relation.from);
+        this.validateEntityName(relation.to);
+        this.validateRelationType(relation.relationType);
         const getEntityId = this.db.prepare('SELECT id FROM entities WHERE name = ?');
         const fromEntity = getEntityId.get(relation.from);
         const toEntity = getEntityId.get(relation.to);
@@ -167,13 +401,17 @@ export class KnowledgeGraph {
       ON CONFLICT(from_entity_id, to_entity_id, relation_type) DO UPDATE SET
         metadata = excluded.metadata
     `);
-        stmt.run(fromEntity.id, toEntity.id, relation.relationType, JSON.stringify(relation.metadata || {}));
+        stmt.run(fromEntity.id, toEntity.id, relation.relationType, safeJsonStringify(relation.metadata || {}, '{}'));
         this.queryCache.invalidatePattern(/^relations:/);
         this.queryCache.invalidatePattern(/^trace:/);
         logger.info(`[KG] Created relation: ${relation.from} -[${relation.relationType}]-> ${relation.to}`);
     }
     searchEntities(query) {
         const MAX_LIMIT = 1000;
+        if (query.limit === 0) {
+            return [];
+        }
+        let effectiveLimit = query.limit;
         if (query.limit !== undefined) {
             if (query.limit < 0) {
                 throw new ValidationError('Limit must be non-negative', {
@@ -184,7 +422,7 @@ export class KnowledgeGraph {
             }
             if (query.limit > MAX_LIMIT) {
                 logger.warn(`Limit ${query.limit} exceeds maximum, capping to ${MAX_LIMIT}`);
-                query.limit = MAX_LIMIT;
+                effectiveLimit = MAX_LIMIT;
             }
         }
         if (query.offset !== undefined && query.offset < 0) {
@@ -194,7 +432,18 @@ export class KnowledgeGraph {
                 providedOffset: query.offset,
             });
         }
-        const cacheKey = `entities:${JSON.stringify(query)}`;
+        if (query.namePattern !== undefined && query.namePattern !== '') {
+            validateNonEmptyString(query.namePattern, 'Name pattern');
+            if (CONTROL_CHAR_PATTERN.test(query.namePattern)) {
+                throw new ValidationError('Name pattern must not contain control characters', {
+                    component: 'KnowledgeGraph',
+                    method: 'searchEntities',
+                    namePattern: query.namePattern.slice(0, 100),
+                });
+            }
+        }
+        const cacheKeyQuery = { ...query, limit: effectiveLimit };
+        const cacheKey = `entities:${JSON.stringify(cacheKeyQuery)}`;
         const cached = this.queryCache.get(cacheKey);
         if (cached) {
             return cached;
@@ -216,15 +465,24 @@ export class KnowledgeGraph {
             params.push(query.tag);
         }
         if (query.namePattern) {
-            sql += " AND e.name LIKE ? ESCAPE '\\'";
-            params.push(`%${this.escapeLikePattern(query.namePattern)}%`);
+            const ftsResults = this.searchFTS5(query.namePattern, effectiveLimit || 100);
+            if (ftsResults.length > 0) {
+                sql += ' AND e.id IN (' + ftsResults.map(() => '?').join(',') + ')';
+                params.push(...ftsResults);
+            }
+            else {
+                sql += " AND (e.name LIKE ? ESCAPE '!' OR e.id IN (SELECT entity_id FROM observations WHERE content LIKE ? ESCAPE '!'))";
+                const escapedPattern = `%${this.escapeLikePattern(query.namePattern)}%`;
+                params.push(escapedPattern);
+                params.push(escapedPattern);
+            }
         }
         sql += ' ORDER BY e.created_at DESC';
-        if (query.limit) {
+        if (effectiveLimit !== undefined) {
             sql += ' LIMIT ?';
-            params.push(query.limit);
+            params.push(effectiveLimit);
         }
-        if (query.offset) {
+        if (query.offset !== undefined) {
             sql += ' OFFSET ?';
             params.push(query.offset);
         }
@@ -251,10 +509,12 @@ export class KnowledgeGraph {
         return entities;
     }
     getEntity(name) {
+        this.validateEntityName(name);
         const results = this.searchEntities({ namePattern: name, limit: 1 });
         return results.length > 0 ? results[0] : null;
     }
     traceRelations(entityName, depth = 2) {
+        this.validateEntityName(entityName);
         const cacheKey = `trace:${entityName}:${depth}`;
         const cached = this.queryCache.get(cacheKey);
         if (cached) {
@@ -283,7 +543,7 @@ export class KnowledgeGraph {
                 from: r.from_name,
                 to: r.to_name,
                 relationType: r.relation_type,
-                metadata: r.metadata ? JSON.parse(r.metadata) : {}
+                metadata: r.metadata ? safeJsonParse(r.metadata, {}) : {}
             };
         }
         const result = {
@@ -322,13 +582,23 @@ export class KnowledgeGraph {
         return result;
     }
     deleteEntity(name) {
-        const getEntityId = this.db.prepare('SELECT id FROM entities WHERE name = ?');
-        const entity = getEntityId.get(name);
-        if (!entity) {
-            return false;
-        }
-        const stmt = this.db.prepare('DELETE FROM entities WHERE name = ?');
-        const result = stmt.run(name);
+        this.validateEntityName(name);
+        const result = this.db.transaction(() => {
+            const entity = this.db.prepare('SELECT id FROM entities WHERE name = ?')
+                .get(name);
+            if (!entity) {
+                return { changes: 0 };
+            }
+            const existingFts = this.db.prepare('SELECT name, observations FROM entities_fts WHERE rowid = ?').get(entity.id);
+            if (existingFts) {
+                this.db.prepare(`
+          INSERT INTO entities_fts(entities_fts, rowid, name, observations)
+          VALUES('delete', ?, ?, ?)
+        `).run(entity.id, existingFts.name, existingFts.observations);
+            }
+            const stmt = this.db.prepare('DELETE FROM entities WHERE name = ?');
+            return stmt.run(name);
+        })();
         this.queryCache.invalidatePattern(/^entities:/);
         this.queryCache.invalidatePattern(/^relations:/);
         this.queryCache.invalidatePattern(/^trace:/);
@@ -341,6 +611,19 @@ export class KnowledgeGraph {
         this.db.close();
         logger.info('[KG] Database connection and cache closed');
     }
+    transaction(fn) {
+        try {
+            const transactionFn = this.db.transaction(fn);
+            return transactionFn();
+        }
+        catch (error) {
+            logger.error('[KG] Transaction failed and rolled back:', {
+                error: error instanceof Error ? error.message : String(error),
+                stack: error instanceof Error ? error.stack : undefined,
+            });
+            throw error;
+        }
+    }
     getCacheStats() {
         return this.queryCache.getStats();
     }

package/dist/knowledge-graph/index.js.map

@@ -1 +1 @@
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package/dist/knowledge-graph/types.d.ts

@@ -5,6 +5,7 @@ export interface Entity {
     observations: string[];
     tags?: string[];
     metadata?: Record<string, unknown>;
+    contentHash?: string;
     createdAt?: Date;
 }
 export type EntityType = 'decision' | 'bug_fix' | 'feature' | 'lesson_learned' | 'best_practice' | 'problem_solution' | 'technical_debt' | 'optimization' | 'refactoring' | 'learning_experience' | 'code_change' | 'test_result' | 'session_snapshot' | 'project_snapshot' | 'workflow_checkpoint' | 'commit' | 'prevention_rule' | 'user_preference';

package/dist/knowledge-graph/types.d.ts.map

@@ -1 +1 @@
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package/dist/management/UninstallManager.d.ts.map

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package/dist/management/UninstallManager.js.map

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package/dist/mcp/BuddyCommands.d.ts

@@ -3,11 +3,24 @@ export interface ParsedCommand {
     args: string;
     originalInput: string;
 }
+export interface HelpOptions {
+    full?: boolean;
+    format?: 'default' | 'simple' | 'detailed';
+}
 export declare class BuddyCommands {
     private static readonly ALIASES;
     private static readonly VALID_COMMANDS;
     static parse(input: string): ParsedCommand;
-    static getHelp(command?: string): string;
-    private static getGeneralHelp;
+    static getHelp(command?: string, options?: HelpOptions): string;
+    private static getQuickStartHelp;
+    private static getFullHelp;
+    private static getCommandHelp;
+    private static getDoCommandHelp;
+    private static getRememberCommandHelp;
+    private static getHelpCommandHelp;
+    private static getA2AHelp;
+    private static getSecretsHelp;
+    private static getKnowledgeHelp;
+    private static getHealthHelp;
 }
 //# sourceMappingURL=BuddyCommands.d.ts.map

package/dist/mcp/BuddyCommands.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"BuddyCommands.d.ts","sourceRoot":"","sources":["../../src/mcp/BuddyCommands.ts"],"names":[],"mappings":"AAYA,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,MAAM,CAAC,EAAE,SAAS,GAAG,QAAQ,GAAG,UAAU,CAAC;CAC5C;AAED,qBAAa,aAAa;IAIxB,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,OAAO,CAa5B;IAKH,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,cAAc,CAInC;IAQH,MAAM,CAAC,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,aAAa;IAiD1C,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,MAAM,EAAE,OAAO,GAAE,WAAgB,GAAG,MAAM;IAWnE,OAAO,CAAC,MAAM,CAAC,iBAAiB;IA6ChC,OAAO,CAAC,MAAM,CAAC,WAAW;IAgF1B,OAAO,CAAC,MAAM,CAAC,cAAc;IAsB7B,OAAO,CAAC,MAAM,CAAC,gBAAgB;IAiD/B,OAAO,CAAC,MAAM,CAAC,sBAAsB;IAmDrC,OAAO,CAAC,MAAM,CAAC,kBAAkB;IA6CjC,OAAO,CAAC,MAAM,CAAC,UAAU;IA6FzB,OAAO,CAAC,MAAM,CAAC,cAAc;IA6F7B,OAAO,CAAC,MAAM,CAAC,gBAAgB;IAmH/B,OAAO,CAAC,MAAM,CAAC,aAAa;CA6F7B"}