@pcircle/memesh 2.6.5 → 2.6.7

package/dist/knowledge-graph/index.js

@@ -3,8 +3,12 @@ import { NotFoundError, ValidationError } from '../errors/index.js';
 import { SimpleDatabaseFactory } from '../config/simple-config.js';
 import { logger } from '../utils/logger.js';
 import { QueryCache } from '../db/QueryCache.js';
-import { safeJsonParse } from '../utils/json.js';
+import { safeJsonParse, safeJsonStringify } from '../utils/json.js';
 import { getDataPath, getDataDirectory } from '../utils/PathResolver.js';
+import { validateNonEmptyString } from '../utils/validation.js';
+const MAX_ENTITY_NAME_LENGTH = 512;
+const VALID_RELATION_TYPE_PATTERN = /^[a-zA-Z_][a-zA-Z0-9_-]*$/;
+const CONTROL_CHAR_PATTERN = /[\x00-\x08\x0B\x0C\x0E-\x1F\x7F\x80-\x9F]/;
 export class KnowledgeGraph {
     db;
     queryCache;
@@ -16,6 +20,36 @@ export class KnowledgeGraph {
             debug: false,
         });
     }
+    validateEntityName(name) {
+        validateNonEmptyString(name, 'Entity name');
+        if (name.length > MAX_ENTITY_NAME_LENGTH) {
+            throw new ValidationError(`Entity name exceeds maximum length of ${MAX_ENTITY_NAME_LENGTH} characters (got ${name.length})`, {
+                component: 'KnowledgeGraph',
+                method: 'validateEntityName',
+                nameLength: name.length,
+                maxLength: MAX_ENTITY_NAME_LENGTH,
+            });
+        }
+        if (CONTROL_CHAR_PATTERN.test(name)) {
+            throw new ValidationError('Entity name must not contain control characters', {
+                component: 'KnowledgeGraph',
+                method: 'validateEntityName',
+                name: name.slice(0, 100),
+            });
+        }
+    }
+    validateRelationType(relationType) {
+        validateNonEmptyString(relationType, 'Relation type');
+        if (!VALID_RELATION_TYPE_PATTERN.test(relationType)) {
+            throw new ValidationError(`Relation type must contain only alphanumeric characters, underscores, and hyphens, ` +
+                `and must start with a letter or underscore. Got: "${relationType}"`, {
+                component: 'KnowledgeGraph',
+                method: 'validateRelationType',
+                relationType,
+                pattern: VALID_RELATION_TYPE_PATTERN.source,
+            });
+        }
+    }
     static async create(dbPath) {
         const defaultPath = getDataPath('knowledge-graph.db');
         const resolvedPath = dbPath || defaultPath;
@@ -106,52 +140,111 @@ export class KnowledgeGraph {
       CREATE INDEX IF NOT EXISTS idx_tags_entity_tag ON tags(entity_id, tag);
     `;
         this.db.exec(schema);
+        this.runMigrations();
+    }
+    runMigrations() {
+        try {
+            const tableInfo = this.db.pragma('table_info(entities)');
+            const hasContentHash = tableInfo.some((col) => col.name === 'content_hash');
+            if (!hasContentHash) {
+                logger.info('[KG] Running migration: Adding content_hash column to entities table');
+                this.db.exec(`
+          ALTER TABLE entities ADD COLUMN content_hash TEXT;
+        `);
+                this.db.exec(`
+          CREATE UNIQUE INDEX IF NOT EXISTS idx_entities_content_hash
+          ON entities(content_hash)
+          WHERE content_hash IS NOT NULL;
+        `);
+                logger.info('[KG] Migration complete: content_hash column added with unique index');
+            }
+        }
+        catch (error) {
+            logger.error('[KG] Migration failed:', {
+                error: error instanceof Error ? error.message : String(error),
+            });
+            throw error;
+        }
     }
     escapeLikePattern(pattern) {
+        if (typeof pattern !== 'string') {
+            throw new Error(`Pattern must be a string, got ${typeof pattern}`);
+        }
         return pattern
-            .replace(/\\/g, '\\\\')
-            .replace(/%/g, '\\%')
-            .replace(/_/g, '\\_')
-            .replace(/\[/g, '\\[');
+            .replace(/!/g, '!!')
+            .replace(/%/g, '!%')
+            .replace(/_/g, '!_')
+            .replace(/\[/g, '![')
+            .replace(/\]/g, '!]');
     }
     createEntity(entity) {
-        const stmt = this.db.prepare(`
-      INSERT INTO entities (name, type, metadata)
-      VALUES (?, ?, json(?))
-      ON CONFLICT(name) DO UPDATE SET
-        type = excluded.type,
-        metadata = excluded.metadata
-    `);
-        stmt.run(entity.name, entity.entityType, JSON.stringify(entity.metadata || {}));
-        const actualEntity = this.db
-            .prepare('SELECT id FROM entities WHERE name = ?')
-            .get(entity.name);
-        const actualId = actualEntity.id;
-        this.db.prepare('DELETE FROM observations WHERE entity_id = ?').run(actualId);
-        this.db.prepare('DELETE FROM tags WHERE entity_id = ?').run(actualId);
-        if (entity.observations && entity.observations.length > 0) {
-            const obsStmt = this.db.prepare(`
-        INSERT INTO observations (entity_id, content)
-        VALUES (?, ?)
+        this.validateEntityName(entity.name);
+        try {
+            if (entity.contentHash) {
+                const existing = this.db
+                    .prepare('SELECT name FROM entities WHERE content_hash = ?')
+                    .get(entity.contentHash);
+                if (existing && existing.name !== entity.name) {
+                    logger.info(`[KG] Deduplicated: content_hash match, using existing entity ${existing.name}`);
+                    return existing.name;
+                }
+            }
+            const stmt = this.db.prepare(`
+        INSERT INTO entities (name, type, metadata, content_hash)
+        VALUES (?, ?, json(?), ?)
+        ON CONFLICT(name) DO UPDATE SET
+          type = excluded.type,
+          metadata = excluded.metadata,
+          content_hash = excluded.content_hash
       `);
-            for (const obs of entity.observations) {
-                obsStmt.run(actualId, obs);
+            stmt.run(entity.name, entity.entityType, safeJsonStringify(entity.metadata || {}, '{}'), entity.contentHash || null);
+            const actualEntity = this.db
+                .prepare('SELECT id FROM entities WHERE name = ?')
+                .get(entity.name);
+            const actualId = actualEntity.id;
+            this.db.prepare('DELETE FROM observations WHERE entity_id = ?').run(actualId);
+            this.db.prepare('DELETE FROM tags WHERE entity_id = ?').run(actualId);
+            if (entity.observations && entity.observations.length > 0) {
+                const obsStmt = this.db.prepare(`
+          INSERT INTO observations (entity_id, content)
+          VALUES (?, ?)
+        `);
+                for (const obs of entity.observations) {
+                    obsStmt.run(actualId, obs);
+                }
+            }
+            if (entity.tags && entity.tags.length > 0) {
+                const tagStmt = this.db.prepare(`
+          INSERT INTO tags (entity_id, tag)
+          VALUES (?, ?)
+        `);
+                for (const tag of entity.tags) {
+                    tagStmt.run(actualId, tag);
+                }
             }
+            this.queryCache.invalidatePattern(/^entities:/);
+            logger.info(`[KG] Created entity: ${entity.name} (type: ${entity.entityType})`);
+            return entity.name;
         }
-        if (entity.tags && entity.tags.length > 0) {
-            const tagStmt = this.db.prepare(`
-        INSERT INTO tags (entity_id, tag)
-        VALUES (?, ?)
-      `);
-            for (const tag of entity.tags) {
-                tagStmt.run(actualId, tag);
+        catch (error) {
+            if (error instanceof Error &&
+                error.message.includes('UNIQUE constraint failed') &&
+                error.message.includes('content_hash')) {
+                const existing = this.db
+                    .prepare('SELECT name FROM entities WHERE content_hash = ?')
+                    .get(entity.contentHash);
+                if (existing) {
+                    logger.warn(`[KG] Race condition detected: content_hash conflict, using existing entity ${existing.name}`);
+                    return existing.name;
+                }
             }
+            throw error;
         }
-        this.queryCache.invalidatePattern(/^entities:/);
-        logger.info(`[KG] Created entity: ${entity.name} (type: ${entity.entityType})`);
-        return actualId;
     }
     createRelation(relation) {
+        this.validateEntityName(relation.from);
+        this.validateEntityName(relation.to);
+        this.validateRelationType(relation.relationType);
         const getEntityId = this.db.prepare('SELECT id FROM entities WHERE name = ?');
         const fromEntity = getEntityId.get(relation.from);
         const toEntity = getEntityId.get(relation.to);
@@ -167,13 +260,17 @@ export class KnowledgeGraph {
       ON CONFLICT(from_entity_id, to_entity_id, relation_type) DO UPDATE SET
         metadata = excluded.metadata
     `);
-        stmt.run(fromEntity.id, toEntity.id, relation.relationType, JSON.stringify(relation.metadata || {}));
+        stmt.run(fromEntity.id, toEntity.id, relation.relationType, safeJsonStringify(relation.metadata || {}, '{}'));
         this.queryCache.invalidatePattern(/^relations:/);
         this.queryCache.invalidatePattern(/^trace:/);
         logger.info(`[KG] Created relation: ${relation.from} -[${relation.relationType}]-> ${relation.to}`);
     }
     searchEntities(query) {
         const MAX_LIMIT = 1000;
+        if (query.limit === 0) {
+            return [];
+        }
+        let effectiveLimit = query.limit;
         if (query.limit !== undefined) {
             if (query.limit < 0) {
                 throw new ValidationError('Limit must be non-negative', {
@@ -184,7 +281,7 @@ export class KnowledgeGraph {
             }
             if (query.limit > MAX_LIMIT) {
                 logger.warn(`Limit ${query.limit} exceeds maximum, capping to ${MAX_LIMIT}`);
-                query.limit = MAX_LIMIT;
+                effectiveLimit = MAX_LIMIT;
             }
         }
         if (query.offset !== undefined && query.offset < 0) {
@@ -194,7 +291,18 @@ export class KnowledgeGraph {
                 providedOffset: query.offset,
             });
         }
-        const cacheKey = `entities:${JSON.stringify(query)}`;
+        if (query.namePattern !== undefined && query.namePattern !== '') {
+            validateNonEmptyString(query.namePattern, 'Name pattern');
+            if (CONTROL_CHAR_PATTERN.test(query.namePattern)) {
+                throw new ValidationError('Name pattern must not contain control characters', {
+                    component: 'KnowledgeGraph',
+                    method: 'searchEntities',
+                    namePattern: query.namePattern.slice(0, 100),
+                });
+            }
+        }
+        const cacheKeyQuery = { ...query, limit: effectiveLimit };
+        const cacheKey = `entities:${JSON.stringify(cacheKeyQuery)}`;
         const cached = this.queryCache.get(cacheKey);
         if (cached) {
             return cached;
@@ -216,15 +324,15 @@ export class KnowledgeGraph {
             params.push(query.tag);
         }
         if (query.namePattern) {
-            sql += " AND e.name LIKE ? ESCAPE '\\'";
+            sql += " AND e.name LIKE ? ESCAPE '!'";
             params.push(`%${this.escapeLikePattern(query.namePattern)}%`);
         }
         sql += ' ORDER BY e.created_at DESC';
-        if (query.limit) {
+        if (effectiveLimit !== undefined) {
             sql += ' LIMIT ?';
-            params.push(query.limit);
+            params.push(effectiveLimit);
         }
-        if (query.offset) {
+        if (query.offset !== undefined) {
             sql += ' OFFSET ?';
             params.push(query.offset);
         }
@@ -251,10 +359,12 @@ export class KnowledgeGraph {
         return entities;
     }
     getEntity(name) {
+        this.validateEntityName(name);
         const results = this.searchEntities({ namePattern: name, limit: 1 });
         return results.length > 0 ? results[0] : null;
     }
     traceRelations(entityName, depth = 2) {
+        this.validateEntityName(entityName);
         const cacheKey = `trace:${entityName}:${depth}`;
         const cached = this.queryCache.get(cacheKey);
         if (cached) {
@@ -283,7 +393,7 @@ export class KnowledgeGraph {
                 from: r.from_name,
                 to: r.to_name,
                 relationType: r.relation_type,
-                metadata: r.metadata ? JSON.parse(r.metadata) : {}
+                metadata: r.metadata ? safeJsonParse(r.metadata, {}) : {}
             };
         }
         const result = {
@@ -322,6 +432,7 @@ export class KnowledgeGraph {
         return result;
     }
     deleteEntity(name) {
+        this.validateEntityName(name);
         const getEntityId = this.db.prepare('SELECT id FROM entities WHERE name = ?');
         const entity = getEntityId.get(name);
         if (!entity) {
@@ -341,6 +452,19 @@ export class KnowledgeGraph {
         this.db.close();
         logger.info('[KG] Database connection and cache closed');
     }
+    transaction(fn) {
+        try {
+            const transactionFn = this.db.transaction(fn);
+            return transactionFn();
+        }
+        catch (error) {
+            logger.error('[KG] Transaction failed and rolled back:', {
+                error: error instanceof Error ? error.message : String(error),
+                stack: error instanceof Error ? error.stack : undefined,
+            });
+            throw error;
+        }
+    }
     getCacheStats() {
         return this.queryCache.getStats();
     }

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package/dist/knowledge-graph/types.d.ts

@@ -5,6 +5,7 @@ export interface Entity {
     observations: string[];
     tags?: string[];
     metadata?: Record<string, unknown>;
+    contentHash?: string;
     createdAt?: Date;
 }
 export type EntityType = 'decision' | 'bug_fix' | 'feature' | 'lesson_learned' | 'best_practice' | 'problem_solution' | 'technical_debt' | 'optimization' | 'refactoring' | 'learning_experience' | 'code_change' | 'test_result' | 'session_snapshot' | 'project_snapshot' | 'workflow_checkpoint' | 'commit' | 'prevention_rule' | 'user_preference';

package/dist/knowledge-graph/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/knowledge-graph/types.ts"],"names":[],"mappings":"AAOA,MAAM,WAAW,MAAM;IACrB,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,UAAU,CAAC;IACvB,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACnC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,SAAS,CAAC,EAAE,IAAI,CAAC;CAClB;AAED,MAAM,MAAM,UAAU,GAElB,UAAU,GACV,SAAS,GACT,SAAS,GACT,gBAAgB,GAChB,eAAe,GACf,kBAAkB,GAClB,gBAAgB,GAChB,cAAc,GACd,aAAa,GACb,qBAAqB,GAErB,aAAa,GACb,aAAa,GACb,kBAAkB,GAClB,kBAAkB,GAClB,qBAAqB,GACrB,QAAQ,GACR,iBAAiB,GACjB,iBAAiB,CAAC;AAEtB,MAAM,WAAW,QAAQ;IACvB,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,EAAE,EAAE,MAAM,CAAC;IACX,YAAY,EAAE,YAAY,CAAC;IAC3B,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACnC,SAAS,CAAC,EAAE,IAAI,CAAC;CAClB;AAED,MAAM,MAAM,YAAY,GACpB,WAAW,GACX,YAAY,GACZ,iBAAiB,GACjB,QAAQ,GACR,aAAa,GACb,YAAY,GACZ,YAAY,GACZ,cAAc,CAAC;AAEnB,MAAM,WAAW,WAAW;IAC1B,UAAU,CAAC,EAAE,UAAU,CAAC;IACxB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,aAAa;IAC5B,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,KAAK,CAAC;QACf,IAAI,EAAE,MAAM,CAAC;QACb,EAAE,EAAE,MAAM,CAAC;QACX,YAAY,EAAE,YAAY,CAAC;QAC3B,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;KACpC,CAAC,CAAC;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB"}

package/dist/mcp/BuddyCommands.d.ts

@@ -3,11 +3,20 @@ export interface ParsedCommand {
     args: string;
     originalInput: string;
 }
+export interface HelpOptions {
+    full?: boolean;
+    format?: 'default' | 'simple' | 'detailed';
+}
 export declare class BuddyCommands {
     private static readonly ALIASES;
     private static readonly VALID_COMMANDS;
     static parse(input: string): ParsedCommand;
-    static getHelp(command?: string): string;
-    private static getGeneralHelp;
+    static getHelp(command?: string, options?: HelpOptions): string;
+    private static getQuickStartHelp;
+    private static getFullHelp;
+    private static getCommandHelp;
+    private static getDoCommandHelp;
+    private static getRememberCommandHelp;
+    private static getHelpCommandHelp;
 }
 //# sourceMappingURL=BuddyCommands.d.ts.map

package/dist/mcp/BuddyCommands.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"BuddyCommands.d.ts","sourceRoot":"","sources":["../../src/mcp/BuddyCommands.ts"],"names":[],"mappings":"AASA,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,qBAAa,aAAa;IAIxB,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,OAAO,CAa5B;IAKH,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,cAAc,CAInC;IAQH,MAAM,CAAC,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,aAAa;IAgD1C,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM;IAkDxC,OAAO,CAAC,MAAM,CAAC,cAAc;CAoB9B"}
+{"version":3,"file":"BuddyCommands.d.ts","sourceRoot":"","sources":["../../src/mcp/BuddyCommands.ts"],"names":[],"mappings":"AAYA,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,MAAM,CAAC,EAAE,SAAS,GAAG,QAAQ,GAAG,UAAU,CAAC;CAC5C;AAED,qBAAa,aAAa;IAIxB,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,OAAO,CAa5B;IAKH,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,cAAc,CAInC;IAQH,MAAM,CAAC,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,aAAa;IAiD1C,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,MAAM,EAAE,OAAO,GAAE,WAAgB,GAAG,MAAM;IAWnE,OAAO,CAAC,MAAM,CAAC,iBAAiB;IAqChC,OAAO,CAAC,MAAM,CAAC,WAAW;IAqC1B,OAAO,CAAC,MAAM,CAAC,cAAc;IAc7B,OAAO,CAAC,MAAM,CAAC,gBAAgB;IAiD/B,OAAO,CAAC,MAAM,CAAC,sBAAsB;IAmDrC,OAAO,CAAC,MAAM,CAAC,kBAAkB;CA0ClC"}