@pathmode/mcp-server 1.15.0 → 1.16.0

package/dist/api-client.d.ts

@@ -47,6 +47,8 @@ export interface ApiIntent {
     verification: Record<string, any>;
     externalLinks: any[];
     evidenceAnchors: Record<string, string[]>;
+    /** Readiness confirmations and waivers. Present since mcp-server 1.16.0 / the confirmations column. */
+    confirmations?: Record<string, unknown>[];
     decisions?: IntentDecision[];
     implementationContext?: {
         relevantAreas: {
@@ -164,6 +166,12 @@ export interface UpdateIntentInput {
         inScope?: string[];
         outOfScope?: string[];
     };
+    /**
+     * Readiness confirmations, sent WHOLE: the column is replace-all, so the caller must carry
+     * forward what it read. Never send one in the same call that edits the field it confirms; the
+     * API refuses that (M1), and refuses an anchor that does not match the stored text.
+     */
+    confirmations?: Record<string, unknown>[];
 }
 export interface EvidenceQuery {
     productId?: string;

package/dist/api-client.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -34140,6 +34140,9 @@ exports.formatIntentMd = formatIntentMd;
 exports.formatCursorRules = formatCursorRules;
 exports.formatClaudeMdSection = formatClaudeMdSection;
 exports.formatOutcomeRubric = formatOutcomeRubric;
+exports.spliceConfirmationsSection = spliceConfirmationsSection;
+exports.renderConfirmationsSection = renderConfirmationsSection;
+exports.writeConfirmationRecord = writeConfirmationRecord;
 // Verification check collection. Mirrors lib/verification in the main app — this package is
 // standalone (own ncc build) and can't import it, so the type + adapter live here. `kind` is the
 const crypto_1 = __nccwpck_require__(6982);
@@ -34895,6 +34898,87 @@ function formatOutcomeRubric(spec, opts = {}) {
     doc.push('');
     return doc.join('\n');
 }
+/**
+ * Splice a `## Confirmations` section into an existing intent.md WITHOUT regenerating the file.
+ *
+ * Regenerating through formatIntentMd is lossy by construction: LocalIntent is a projection, so
+ * a round-trip drops unknown frontmatter keys, resets `version` and `status` to their defaults,
+ * restamps `created`, and deletes any section the reader has no field for. Measured on a real
+ * spec: status approved -> draft, version 7 -> 1, and `source`, `specVersion` and a `## Evidence`
+ * section gone. A tool that records a judgment must not destroy the document it judges.
+ *
+ * So this is a text operation. It replaces an existing `## Confirmations` section in place, or
+ * appends one at the end, and touches nothing else in the file.
+ */
+function spliceConfirmationsSection(original, section) {
+    const lines = original.split('\n');
+    const start = lines.findIndex(l => /^##\s+Confirmations\s*$/.test(l));
+    if (start === -1) {
+        const trimmed = original.replace(/\s*$/, '');
+        return `${trimmed}\n\n${section.trim()}\n`;
+    }
+    // Run to the next `##`/`#` heading, so a later section survives untouched.
+    let end = lines.length;
+    for (let i = start + 1; i < lines.length; i++) {
+        if (/^#{1,2}\s+/.test(lines[i])) {
+            end = i;
+            break;
+        }
+    }
+    const before = lines.slice(0, start).join('\n').replace(/\s*$/, '');
+    const after = lines.slice(end).join('\n').replace(/^\s*/, '');
+    return `${before}\n\n${section.trim()}\n${after ? `\n${after}` : ''}`;
+}
+/** Render confirmation records as the `## Confirmations` section body. */
+function renderConfirmationsSection(records) {
+    const emittable = records.filter((c) => {
+        const dim = String(c.dimension ?? '').toLowerCase();
+        const kind = String(c.kind ?? '').toLowerCase();
+        const by = String(c.by ?? '').toLowerCase();
+        return ['objective', 'outcomes'].includes(dim)
+            && ['confirmed', 'waived'].includes(kind)
+            && ['agent', 'human'].includes(by);
+    });
+    if (!emittable.length)
+        return '';
+    const out = ['## Confirmations'];
+    for (const c of emittable) {
+        out.push('');
+        out.push(`**${String(c.dimension).toLowerCase()}** — ${String(c.kind).toLowerCase()} by ${String(c.by).toLowerCase()}`);
+        for (const key of ['actor', 'problem', 'outcome', 'observable', 'reason', 'anchor', 'at']) {
+            const v = c[key];
+            if (typeof v !== 'string' || !v.trim())
+                continue;
+            out.push(`- ${key}: ${v.replace(/\s+/g, ' ').trim()}`);
+        }
+    }
+    return out.join('\n');
+}
+function writeConfirmationRecord(opts) {
+    let raw = opts.read();
+    for (let attempt = 0; attempt < 2; attempt++) {
+        if ((raw.match(/^##[ \t]+Confirmations[ \t]*$/gm) ?? []).length > 1) {
+            return { ok: false, code: 'DUPLICATE_SECTION' };
+        }
+        if (opts.anchorOf(raw) !== opts.anchor) {
+            return { ok: false, code: 'FIELD_CHANGED' };
+        }
+        // One live record per dimension: a re-confirmation replaces rather than accumulates.
+        // Rebuilt from the SAME bytes being spliced. The defect was building this list from a
+        // parse taken earlier and splicing it into freshly-read bytes, so a record written in
+        // between was deleted by whoever wrote second.
+        const kept = opts.confirmationsOf(raw).filter(c => c.dimension !== opts.dimension);
+        const content = spliceConfirmationsSection(raw, renderConfirmationsSection([...kept, opts.record]));
+        const fresh = opts.read();
+        if (fresh !== raw) {
+            raw = fresh;
+            continue;
+        }
+        opts.write(content);
+        return { ok: true, kept };
+    }
+    return { ok: false, code: 'FILE_CHANGED' };
+}
 
 
 /***/ }),
@@ -35028,14 +35112,65 @@ function readIntentFile(filePath) {
  * Exported so lib/intentMdParseParity.test.ts can hold the web paste-box parser
  * (lib/intentMdParse.ts) to this implementation's behavior on gate-relevant fields.
  */
+/**
+ * Sections win; frontmatter fills an absence. Mirrors lib/intentMdParse.preferSection.
+ *
+ * Local mode originally read only files that formatIntentMd wrote, which always carry body
+ * sections, so the fallback never fired and was omitted. The preflight CLI broke that
+ * assumption: it points this parser at hand-written files, including the frontmatter-only
+ * shape the /intentspec starter and `pathmode validate` both bless. Without the fallback the
+ * same CLI validated a spec's outcomes as schema-correct and then reported "nothing found"
+ * for them, which is the false "you wrote nothing" this codebase has spent a research cycle
+ * stamping out.
+ */
+function preferSection(fromSection, fromFrontmatter) {
+    if (fromSection.length > 0)
+        return fromSection;
+    if (!Array.isArray(fromFrontmatter))
+        return [];
+    return fromFrontmatter
+        .map((v) => (typeof v === 'string' ? v : coerceItemText(v)))
+        .map((v) => v.trim())
+        .filter(Boolean);
+}
+/** Coerce a structured frontmatter entry ({text}, {description}) to its text, else ''. */
+function coerceItemText(v) {
+    if (!v || typeof v !== 'object')
+        return '';
+    const o = v;
+    for (const key of ['text', 'description', 'title']) {
+        if (typeof o[key] === 'string')
+            return o[key];
+    }
+    return '';
+}
+/** Frontmatter edge cases in the schema's {scenario, expectedBehavior} shape. */
+function frontmatterEdgeCases(v) {
+    if (!Array.isArray(v))
+        return [];
+    return v
+        .map((e) => {
+        const o = (e ?? {});
+        return {
+            scenario: typeof o.scenario === 'string' ? o.scenario.trim() : '',
+            expectedBehavior: typeof o.expectedBehavior === 'string' ? o.expectedBehavior.trim()
+                : typeof o.expected_behavior === 'string' ? o.expected_behavior.trim() : '',
+        };
+    })
+        .filter((e) => e.scenario || e.expectedBehavior);
+}
 function parseIntentMarkdown(content, fallbackId = 'intent') {
     const { data, content: rawBody } = (0, gray_matter_1.default)(content);
     const body = stripFencedBlocks(rawBody);
     const sections = splitSections(body);
     const parsedVerification = extractVerification(sections);
-    const frontmatterVerification = data.verification && typeof data.verification === 'object'
-        ? data.verification
-        : null;
+    // The public schema allows verification as a flat string array; read it as manual checks
+    // rather than silently producing {} (the same adapter normalizeSpecForReadiness applies).
+    const frontmatterVerification = Array.isArray(data.verification)
+        ? { manualChecks: data.verification.map(v => typeof v === 'string' ? v : coerceItemText(v)).filter(Boolean) }
+        : data.verification && typeof data.verification === 'object'
+            ? data.verification
+            : null;
     const verification = hasVerificationContent(parsedVerification)
         ? parsedVerification
         : (frontmatterVerification || {});
@@ -35050,11 +35185,11 @@ function parseIntentMarkdown(content, fallbackId = 'intent') {
         title: data.title || data.userGoal || extractTitle(body) || 'Untitled Intent',
         stageName: data.stage || undefined,
         severity: data.severity || undefined,
-        outcomes: extractListSection(sections, 'Outcomes'),
+        outcomes: preferSection(extractListSection(sections, 'Outcomes'), data.outcomes),
         decisions: extractDecisions(sections),
-        constraints: extractListSection(sections, 'Constraints'),
-        edgeCases: extractEdgeCases(sections),
-        healthMetrics: extractListSection(sections, 'Health Metrics'),
+        constraints: preferSection(extractListSection(sections, 'Constraints'), data.constraints),
+        edgeCases: (() => { const fromBody = extractEdgeCases(sections); return fromBody.length ? fromBody : frontmatterEdgeCases(data.edgeCases); })(),
+        healthMetrics: preferSection(extractListSection(sections, 'Health Metrics'), data.healthMetrics),
         scope: extractScope(sections) || undefined,
         verification,
         confirmations: extractConfirmations(sections),
@@ -35741,20 +35876,38 @@ exports.READINESS_BLOCKER_DESCRIPTIONS = {
 };
 /** Display order for the gate strip (title first, matching the Preflight page). */
 // ── Confirmation anchoring ──────────────────────────────────────────────────
+/**
+ * Remove PAIRED markdown emphasis markers and nothing else.
+ *
+ * The earlier version replaced every asterisk in the text with nothing. That
+ * was wrong in both directions at once: dropping a literal wildcard (`search * patterns` ->
+ * `search patterns`) is a substantive edit that kept its confirmation live, while `_italic_` was
+ * left alone so a formatting-only edit invalidated one. Emphasis needs an opening marker followed
+ * by non-space and a matching closer, so a lone `*` or `_` survives. Looped because markers nest.
+ */
+function stripEmphasis(text) {
+    let prev;
+    let out = text;
+    do {
+        prev = out;
+        out = out.replace(/(\*\*|__|\*|_)(?=\S)([\s\S]*?\S)\1/g, '$2');
+    } while (out !== prev);
+    return out;
+}
 /**
  * Fold away everything that is a rewrite of the same claim, and nothing that is a change to it.
  * NFC because one glyph has two encodings; soft hyphens because editors inject them invisibly;
- * quote/dash folding and markdown emphasis because adding `**` around a word is formatting, not
- * a reword. Lowercased and whitespace-collapsed last.
+ * quote/dash folding and PAIRED markdown emphasis because adding `**` around a word is
+ * formatting, not a reword. An unpaired `*` or `_` is left alone: it is content (a wildcard),
+ * and deleting it silently kept confirmations alive across a real change to the claim. Lowercased and whitespace-collapsed last.
  */
 function normalizeAnchor(value) {
-    return coerceText(value)
+    return stripEmphasis(coerceText(value))
         .normalize('NFC')
         .replace(/­/g, '')
         .replace(/[‘’ʼ]/g, "'")
         .replace(/[“”]/g, '"')
         .replace(/[–—]/g, '-')
-        .replace(/\*/g, '')
         .replace(/\s+/g, ' ')
         .trim()
         .toLowerCase();
@@ -35843,8 +35996,16 @@ function applyConfirmations(detail, digests, raw) {
             rejected.push({ code: 'stale', dimension: dim });
             continue;
         }
-        if (d && d.state !== 'pass')
+        if (d && d.state !== 'pass') {
             d.state = kind === 'waived' ? 'not_applicable' : 'pass';
+            d.confirmedBy = by === 'human' ? 'human' : 'agent';
+            // Assurance is never taken from the record: a file cannot vouch for itself. Anything
+            // arriving without an authenticated boundary is local-unverified, and renders that way.
+            d.assurance = coerceText(c.assurance).trim() === 'authenticated'
+                ? 'authenticated' : 'local-unverified';
+            if (kind === 'waived')
+                d.reason = coerceText(c.reason).trim();
+        }
     }
     return rejected;
 }
@@ -35954,11 +36115,19 @@ const FRONTMATTER_GATE_LABELS = {
  */
 function formatReadinessFrontmatter(verdict) {
     const total = exports.READINESS_GATE_ORDER.length;
-    const passed = exports.READINESS_GATE_ORDER.filter((k) => verdict.signals[k]).length;
-    if (verdict.ready)
-        return `passed ${passed}/${total}`;
-    const blocking = exports.READINESS_GATE_ORDER.filter((k) => !verdict.signals[k]).map((k) => FRONTMATTER_GATE_LABELS[k]);
-    return `failed ${passed}/${total} — blocking: ${blocking.join(', ')}`;
+    // A confirmed dimension counts as passed; a WAIVED one never does (contract amendment D:
+    // "passed 6/6 (1 waived)" launders an exception into the score). Waivers are counted
+    // separately and named, and a spec with both product dimensions waived is not scored at all.
+    const passed = exports.READINESS_GATE_ORDER.filter((k) => verdict.detail?.[k]?.state === 'pass' || verdict.signals[k]).length;
+    const waived = exports.READINESS_GATE_ORDER.filter((k) => verdict.detail?.[k]?.state === 'not_applicable');
+    const blocking = exports.READINESS_GATE_ORDER.filter((k) => !verdict.signals[k] && verdict.detail?.[k]?.state !== 'pass' && verdict.detail?.[k]?.state !== 'not_applicable').map((k) => FRONTMATTER_GATE_LABELS[k]);
+    if (blocking.length)
+        return `failed ${passed}/${total} — blocking: ${blocking.join(', ')}`;
+    if (waived.length === 2)
+        return 'product intent preflight not applicable to this change';
+    if (waived.length)
+        return `ready with exceptions: ${passed} passed, ${waived.length} waived (${waived.map(k => FRONTMATTER_GATE_LABELS[k]).join(', ')})`;
+    return `passed ${passed}/${total}`;
 }
 /**
  * The extra line an `unconfirmed` dimension earns: what was read, and an honest statement of
@@ -35979,21 +36148,50 @@ function truncateForQuote(text, max = 160) {
     return flat.length <= max ? flat : `${flat.slice(0, max - 1)}…`;
 }
 /** Human/agent-readable verdict block, stable enough to parse by line prefix. */
-function formatReadinessVerdict(verdict, specTitle) {
+function formatReadinessVerdict(verdict, specTitle, 
+/** Override the closing repair line. The default names MCP tools, which are wrong in a CLI
+ *  reading a repo that has never installed Pathmode. */
+repairHint) {
     const lines = [];
     const name = (specTitle || '').trim();
-    if (verdict.ready) {
-        lines.push(`✓ Preflight passed${name ? ` for "${name}"` : ''}. 6/6 checks. Ready to hand to an agent.`);
+    // The RESOLVED state is what a reader acts on: `ready`/`signals` stay the pure lexical
+    // verdict underneath, so what a spec earned stays distinguishable from what was vouched for,
+    // but a confirmed dimension must stop being reported as a blocker or the whole confirmation
+    // loop is invisible.
+    const resolved = (k) => verdict.detail?.[k]?.state ?? (verdict.signals[k] ? 'pass' : 'absent');
+    const stillBlocking = BLOCKER_ORDER.filter(k => !verdict.signals[k] && resolved(k) !== 'pass' && resolved(k) !== 'not_applicable');
+    const waivedKeys = BLOCKER_ORDER.filter(k => resolved(k) === 'not_applicable');
+    const vouched = BLOCKER_ORDER.filter(k => !verdict.signals[k] && resolved(k) === 'pass');
+    if (!stillBlocking.length) {
+        if (waivedKeys.length === 2) {
+            lines.push(`– Product intent preflight not applicable to this change${name ? ` ("${name}")` : ''}.`);
+        }
+        else if (waivedKeys.length) {
+            lines.push(`✓ Ready with exceptions${name ? ` for "${name}"` : ''}. ${6 - waivedKeys.length} passed, ${waivedKeys.length} waived.`);
+        }
+        else {
+            lines.push(`✓ Preflight passed${name ? ` for "${name}"` : ''}. 6/6 checks. Ready to hand to an agent.`);
+        }
+        for (const k of vouched) {
+            const d = verdict.detail?.[k];
+            const who = d?.confirmedBy ?? 'agent';
+            lines.push(`  ✓ ${GATE_LABELS[k]} confirmed by ${who}${who === 'human' && d?.assurance !== 'authenticated' ? ' (unverified)' : ''}, not by the check`);
+        }
+        for (const k of waivedKeys) {
+            const d = verdict.detail?.[k];
+            const who = d?.confirmedBy ?? 'human';
+            lines.push(`  – ${GATE_LABELS[k]} waived by ${who}${who === 'human' && d?.assurance !== 'authenticated' ? ' (unverified)' : ''}: ${d?.reason || 'no reason recorded'}`);
+        }
     }
     else {
-        lines.push(`✗ Preflight failed${name ? ` for "${name}"` : ''}. ${verdict.failingBlockers.length}/6 checks blocking.`);
+        lines.push(`✗ Preflight failed${name ? ` for "${name}"` : ''}. ${stillBlocking.length}/6 checks blocking.`);
         // Blocker lines stay byte-identical and in order; an unconfirmed dimension gets an
         // extra indented line quoting what was actually read. Without it the verdict says
         // "name the actor" to an author who named one in words this vocabulary misses, which
         // an audit of 80 real specs measured as the majority of these failures
         // (docs/research/openspec-corpus-audit.md).
         for (const key of BLOCKER_ORDER) {
-            if (verdict.signals[key])
+            if (verdict.signals[key] || resolved(key) === 'pass' || resolved(key) === 'not_applicable')
                 continue;
             lines.push(`  ✗ ${exports.READINESS_BLOCKER_DESCRIPTIONS[key]}`);
             const d = verdict.detail?.[key];
@@ -36004,10 +36202,13 @@ function formatReadinessVerdict(verdict, specTitle) {
         }
     }
     lines.push('');
-    lines.push(exports.READINESS_GATE_ORDER.map(k => `${verdict.signals[k] ? '✓' : '·'} ${GATE_LABELS[k]}`).join('  '));
-    if (!verdict.ready) {
+    lines.push(exports.READINESS_GATE_ORDER.map(k => {
+        const st = resolved(k);
+        return `${st === 'pass' ? '✓' : st === 'not_applicable' ? '–' : st === 'unconfirmed' ? '?' : '·'} ${GATE_LABELS[k]}`;
+    }).join('  '));
+    if (stillBlocking.length) {
         lines.push('');
-        lines.push('Repair the failing fields (ask the user one targeted question per blocker), save with intent_save, and re-run check_intent_readiness. The verdict is deterministic: the same spec always gets the same result.');
+        lines.push(repairHint ?? 'Repair the failing fields (ask the user one targeted question per blocker), save with intent_save, and re-run check_intent_readiness. The verdict is deterministic: the same spec always gets the same result.');
     }
     return lines.join('\n');
 }
@@ -65941,7 +66142,7 @@ module.exports = /*#__PURE__*/JSON.parse('{"$schema":"http://json-schema.org/dra
 /***/ ((module) => {
 
 "use strict";
-module.exports = /*#__PURE__*/JSON.parse('{"name":"@pathmode/mcp-server","version":"1.15.0","publishConfig":{"access":"public"},"mcpName":"io.github.pathmodeio/mcp-server","description":"Deterministic intent preflight before your agent builds: six calibrated gates, keyless, no model call. Draft and sharpen specs in conversation, or connect a Pathmode workspace to sync intent and evidence across a team.","main":"dist/index.js","bin":{"pathmode-mcp":"dist/index.js"},"files":["dist/","manifest.json","icon.svg","README.md","skills/"],"scripts":{"build":"rm -rf dist && ncc build src/index.ts -o dist","dev":"ts-node src/index.ts","prepublishOnly":"npm run build"},"keywords":["pathmode","mcp","model-context-protocol","claude-code","claude-code-skills","agent-skills","cursor","windsurf","intent-engineering","intent-compiler","ai-agents","product-development","dependency-graph","strategic-planning"],"author":"Pathmode","license":"MIT","type":"commonjs","engines":{"node":">=18.0.0"},"homepage":"https://pathmode.io","dependencies":{"@modelcontextprotocol/sdk":"^1.12.1","gray-matter":"^4.0.3","zod":"^3.24.0"},"devDependencies":{"@types/node":"^25.1.0","@vercel/ncc":"^0.38.4","ts-node":"^10.9.2","typescript":"^5.9.3"}}');
+module.exports = /*#__PURE__*/JSON.parse('{"name":"@pathmode/mcp-server","version":"1.16.0","publishConfig":{"access":"public"},"mcpName":"io.github.pathmodeio/mcp-server","description":"Deterministic intent preflight before your agent builds: six calibrated gates, keyless, no model call. Draft and sharpen specs in conversation, or connect a Pathmode workspace to sync intent and evidence across a team.","main":"dist/index.js","bin":{"pathmode-mcp":"dist/index.js"},"files":["dist/","manifest.json","icon.svg","README.md","skills/"],"scripts":{"build":"rm -rf dist && ncc build src/index.ts -o dist","dev":"ts-node src/index.ts","prepublishOnly":"npm run build"},"keywords":["pathmode","mcp","model-context-protocol","claude-code","claude-code-skills","agent-skills","cursor","windsurf","intent-engineering","intent-compiler","ai-agents","product-development","dependency-graph","strategic-planning"],"author":"Pathmode","license":"MIT","type":"commonjs","engines":{"node":">=18.0.0"},"homepage":"https://pathmode.io","dependencies":{"@modelcontextprotocol/sdk":"^1.12.1","gray-matter":"^4.0.3","zod":"^3.24.0"},"devDependencies":{"@types/node":"^25.1.0","@vercel/ncc":"^0.38.4","ts-node":"^10.9.2","typescript":"^5.9.3"}}');
 
 /***/ })
 
@@ -67359,12 +67560,23 @@ function startMcpServer() {
         let sourceUrl;
         let didNotTravel = [];
         const writeSpecFile = (opts) => {
-            const content = (0, intent_compiler_1.formatIntentMd)({ ...fields, id: opts.canonicalId }, {
+            let content = (0, intent_compiler_1.formatIntentMd)({ ...fields, id: opts.canonicalId }, {
                 version, status, created,
                 readiness: (0, readiness_1.formatReadinessFrontmatter)(verdict),
                 specVersion: opts.specVersion,
                 source: opts.sourceUrl,
             });
+            // Carry existing confirmations across the rewrite. intent_save builds its content from
+            // the incoming spec, which by design has no `confirmations` field (that absence is what
+            // enforces M1: a confirmation cannot be minted in the write that authored the field).
+            // Without this the very next save silently deletes every confirmation the file holds,
+            // and the anchors would have caught nothing because the records would be gone.
+            // Confirmations are re-validated on read, so a save that changed the field text simply
+            // leaves them stale rather than wrongly live.
+            const prior = (0, fs_1.existsSync)(filePath) ? (0, local_reader_1.readIntentFile)(filePath)?.confirmations ?? [] : [];
+            if (prior.length) {
+                content = (0, intent_compiler_1.spliceConfirmationsSection)(content, (0, intent_compiler_1.renderConfirmationsSection)(prior));
+            }
             (0, fs_1.writeFileSync)(filePath, content, 'utf-8');
         };
         if (isLocalMode) {
@@ -67457,9 +67669,9 @@ function startMcpServer() {
      */
     server.registerTool('confirm_intent_dimension', {
         title: 'Confirm or waive a readiness dimension',
-        description: 'Resolve an "unconfirmed" readiness dimension in a local intent.md. Use this when check_intent_readiness reports that it READ your objective or outcomes but could not confirm them: the gate matches a fixed English vocabulary and misses valid phrasing, including other languages. ' +
+        description: 'Resolve an "unconfirmed" readiness dimension, in a local intent.md or in a connected workspace. Use this when check_intent_readiness reports that it READ your objective or outcomes but could not confirm them: the gate matches a fixed English vocabulary and misses valid phrasing, including other languages. ' +
             'confirm: state who is affected and what goes wrong for them, in your own words, and the dimension passes. ' +
-            'waive: mark the dimension as not applicable to this change (a pure refactor has no product outcome). A waiver is a HUMAN decision, so set humanApproved only after the user has explicitly agreed. ' +
+            'waive: mark the dimension as not applicable to this change (a pure refactor has no product outcome). A waiver is a HUMAN decision, so set humanApproved only after the user has explicitly agreed. Waivers are local-mode only: a workspace will not accept one over an API key, which authenticates as a machine. ' +
             'The confirmation is bound to the exact text it was made against and dies automatically if that text is edited. You cannot confirm a dimension the gate read nothing for; write the field first, save, then confirm.',
         inputSchema: {
             dimension: zod_1.z.enum(['objective', 'outcomes']).describe('Only these two are confirmable. Title and verification are never waivable.'),
@@ -67470,13 +67682,61 @@ function startMcpServer() {
             observable: zod_1.z.string().optional().describe('confirm + outcomes: how you would see it.'),
             reason: zod_1.z.string().optional().describe('waive: why this dimension does not apply.'),
             humanApproved: zod_1.z.boolean().optional().describe('waive only. Set ONLY after the user has explicitly approved the waiver. Recorded as a human decision that this environment cannot verify.'),
-            path: zod_1.z.string().optional().describe('Path to the intent file. Defaults to intent.md.'),
+            path: zod_1.z.string().optional().describe('Local mode only: path to the intent file. Defaults to intent.md.'),
+            intentId: zod_1.z.string().optional().describe('Cloud mode: confirm on a specific saved intent. Defaults to the current intent.'),
         },
-    }, async ({ dimension, action, actor, problem, outcome, observable, reason, humanApproved, path }) => {
+    }, async ({ dimension, action, actor, problem, outcome, observable, reason, humanApproved, path, intentId }) => {
+        /**
+         * Local and cloud differ ONLY in where the spec is read from and where the record is
+         * written. Everything between — which states are confirmable, what a record must name,
+         * how it is anchored — is computed once, so the two modes cannot drift into disagreeing
+         * about what a confirmation means.
+         */
         const filePath = resolveWithinProject(path || 'intent.md');
-        const existing = (0, local_reader_1.readIntentFile)(filePath);
-        if (!existing) {
-            return { content: [{ type: 'text', text: `✗ No intent file at ${filePath}. Save one with intent_save first, then confirm.` }] };
+        let existing;
+        let cloudTargetId;
+        if (isLocalMode) {
+            const fromFile = (0, local_reader_1.readIntentFile)(filePath);
+            if (!fromFile) {
+                return { content: [{ type: 'text', text: `✗ No intent file at ${filePath}. Save one with intent_save first, then confirm.` }] };
+            }
+            existing = fromFile;
+        }
+        else {
+            const cloud = requireCloudClient();
+            // Re-read the FULL record. The list projection is a different shape, and grading a
+            // listed row is how the cloud preflight could never pass (mcp-server 1.14.1).
+            const listed = intentId ? undefined : pickCurrentIntent(await cloud.listIntents());
+            cloudTargetId = intentId || listed?.id;
+            const record = cloudTargetId
+                ? await cloud.getIntent(cloudTargetId).catch(() => undefined)
+                : undefined;
+            if (!record) {
+                return {
+                    content: [{
+                            type: 'text',
+                            text: intentId
+                                ? `✗ No intent with id "${intentId}" in this workspace.`
+                                : '✗ No intents found in this workspace. Create one first, then confirm.',
+                        }],
+                };
+            }
+            existing = { ...record, confirmations: (record.confirmations ?? []) };
+        }
+        /**
+         * A waiver is a human decision (amendment A), and in cloud mode this process holds an API
+         * KEY. The API refuses `by: 'human'` from a key precisely so an agent cannot mint the
+         * strongest-looking record there is, and a cloud record renders as `authenticated`, so a
+         * forged one would carry weight a local file's never does. Refuse here with the reason
+         * rather than letting the agent discover it as a 422 it cannot act on.
+         */
+        if (!isLocalMode && action === 'waive') {
+            return {
+                content: [{
+                        type: 'text',
+                        text: `✗ A waiver cannot be recorded through an API key. It is a human decision, and this connection authenticates as a machine, so the workspace will not accept one from it. Confirm ${dimension} instead if the text is there, or waive it from the spec in Pathmode.`,
+                    }],
+            };
         }
         const verdict = (0, readiness_1.computeReadinessVerdict)({ ...existing, confirmations: existing.confirmations });
         const state = verdict.detail[dimension]?.state;
@@ -67509,16 +67769,85 @@ function startMcpServer() {
                     ? { actor: actor.trim(), problem: problem.trim() }
                     : { outcome: outcome.trim(), observable: observable.trim() }),
             };
-        // One live record per dimension: a re-confirmation replaces rather than accumulates.
-        const kept = existing.confirmations.filter(c => c.dimension !== dimension);
-        const content = (0, intent_compiler_1.formatIntentMd)({ ...existing, confirmations: [...kept, record] });
-        (0, fs_1.writeFileSync)(filePath, content, 'utf-8');
+        /**
+         * SPLICE, never regenerate. formatIntentMd round-trips through a lossy projection: it
+         * would reset version and status to defaults, restamp created, and delete unknown
+         * frontmatter keys and any section the reader has no field for. Recording a judgment
+         * must not damage the document being judged.
+         *
+         * READ-MODIFY-WRITE GUARD. The earlier version built the replacement list from the parse
+         * taken at the top of this handler and then spliced it into bytes re-read at write time.
+         * Two agents confirming different dimensions concurrently would each write a list missing
+         * the other's record, so the later writer silently deleted the earlier one. The list is
+         * now rebuilt from the SAME bytes being spliced, and the file is re-read immediately
+         * before writing: if it moved, we start over from the new bytes, once, then refuse.
+         *
+         * This narrows the window rather than closing it. There is no atomic
+         * compare-and-swap on a plain file, and a lockfile is not worth the failure modes it
+         * brings to a local dev tool. The remaining race needs a write landing inside the gap
+         * between the final read and the write itself.
+         */
+        let kept;
+        let where;
+        if (!isLocalMode) {
+            /**
+             * Replace-all column, so the whole list is sent and the caller carries forward what it
+             * read. Fenced on specVersion: a concurrent edit is a 409 rather than a silent
+             * overwrite, which is the same lost-update shape the local splice guard exists for.
+             *
+             * The API independently re-checks the anchor against the stored text and refuses a
+             * confirmation for a field the same request edits. This call sends no field edits at
+             * all, so those checks should pass; if one fails, the spec moved under us and the
+             * message says so rather than retrying into whatever is there now.
+             */
+            kept = existing.confirmations.filter(c => c.dimension !== dimension);
+            const cloud = requireCloudClient();
+            try {
+                await cloud.updateIntent(cloudTargetId, {
+                    confirmations: [...kept, record],
+                    ...(typeof existing.specVersion === 'string' ? { expectedVersion: existing.specVersion } : {}),
+                });
+            }
+            catch (e) {
+                const msg = e instanceof Error ? e.message : String(e);
+                return {
+                    content: [{
+                            type: 'text',
+                            text: /409|conflict|changed/i.test(msg)
+                                ? `✗ The intent changed while this confirmation was being written. Re-read it and confirm against the current text.`
+                                : `✗ Could not record the confirmation: ${msg}`,
+                        }],
+                };
+            }
+            where = `intent ${cloudTargetId}`;
+        }
+        else {
+            const writeResult = (0, intent_compiler_1.writeConfirmationRecord)({
+                read: () => (0, fs_1.readFileSync)(filePath, 'utf-8'),
+                write: (content) => (0, fs_1.writeFileSync)(filePath, content, 'utf-8'),
+                dimension,
+                record: record,
+                anchor,
+                anchorOf: (bytes) => (0, readiness_1.fieldDigest)((0, readiness_1.computeReadinessVerdict)((0, local_reader_1.parseIntentMarkdown)(bytes, 'intent')).detail[dimension]?.extracted ?? ''),
+                confirmationsOf: (bytes) => ((0, local_reader_1.parseIntentMarkdown)(bytes, 'intent').confirmations ?? []),
+            });
+            if (!writeResult.ok) {
+                const why = {
+                    DUPLICATE_SECTION: `${filePath} has more than one "## Confirmations" section. The reader takes the last and this writer replaces the first, so a record written now would be invisible. Merge them into one section, then confirm.`,
+                    FIELD_CHANGED: `${dimension} in ${filePath} changed while this confirmation was being written. Re-read the file and confirm against the current text.`,
+                    FILE_CHANGED: `${filePath} kept changing while this confirmation was being written. Nothing was saved. Retry, or check whether another agent is writing the same file.`,
+                }[writeResult.code];
+                return { content: [{ type: 'text', text: `✗ ${why}` }] };
+            }
+            kept = writeResult.kept;
+            where = filePath;
+        }
         const after = (0, readiness_1.computeReadinessVerdict)({ ...existing, confirmations: [...kept, record] });
         return {
             content: [{
                     type: 'text',
                     text: [
-                        `✓ ${dimension} ${action === 'waive' ? 'waived' : 'confirmed'} in ${filePath}`,
+                        `✓ ${dimension} ${action === 'waive' ? 'waived' : 'confirmed'} in ${where}`,
                         `  ${after.detail[dimension]?.state === 'not_applicable' ? 'not applicable to this change' : 'confirmed against the current text'} · anchor ${anchor}`,
                         action === 'waive' ? '  Recorded as a human decision this environment cannot verify.' : '',
                         '',

package/dist/intent-compiler.d.ts

@@ -137,3 +137,56 @@ export interface OutcomeRubricOptions {
  * Docs: https://platform.claude.com/docs/en/managed-agents/define-outcomes
  */
 export declare function formatOutcomeRubric(spec: IntentFields, opts?: OutcomeRubricOptions): string;
+/**
+ * Splice a `## Confirmations` section into an existing intent.md WITHOUT regenerating the file.
+ *
+ * Regenerating through formatIntentMd is lossy by construction: LocalIntent is a projection, so
+ * a round-trip drops unknown frontmatter keys, resets `version` and `status` to their defaults,
+ * restamps `created`, and deletes any section the reader has no field for. Measured on a real
+ * spec: status approved -> draft, version 7 -> 1, and `source`, `specVersion` and a `## Evidence`
+ * section gone. A tool that records a judgment must not destroy the document it judges.
+ *
+ * So this is a text operation. It replaces an existing `## Confirmations` section in place, or
+ * appends one at the end, and touches nothing else in the file.
+ */
+export declare function spliceConfirmationsSection(original: string, section: string): string;
+/** Render confirmation records as the `## Confirmations` section body. */
+export declare function renderConfirmationsSection(records: Record<string, unknown>[]): string;
+/**
+ * Write one confirmation record into a file's `## Confirmations` section, under a
+ * read-modify-write guard.
+ *
+ * Extracted from the tool handler so the race it exists to narrow is actually testable. The
+ * handler version could only be exercised through stdio, which cannot open the window: the bug
+ * needed a write landing between the handler's parse and its write, and a test that cannot create
+ * that window proves nothing about the guard. Everything here is injected, so a test supplies a
+ * `read` that returns different bytes on successive calls.
+ *
+ * The three refusals, all of which lose a record if waved through:
+ *   - DUPLICATE_SECTION: the reader takes the LAST `## Confirmations` heading and this writer
+ *     replaces the FIRST, so on a two-section file a successful write lands where nothing reads.
+ *   - FIELD_CHANGED: the confirmed text was edited while we were writing, so the record would be
+ *     stale the moment it landed.
+ *   - FILE_CHANGED: the file moved under us twice. One retry, then stop.
+ *
+ * This narrows the window; it does not close it. There is no atomic compare-and-swap on a plain
+ * file, and a lockfile brings failure modes a local dev tool should not have. What remains needs a
+ * write landing between the final read and the write itself.
+ */
+export type ConfirmationWriteResult = {
+    ok: true;
+    kept: Record<string, unknown>[];
+} | {
+    ok: false;
+    code: 'DUPLICATE_SECTION' | 'FIELD_CHANGED' | 'FILE_CHANGED';
+};
+export declare function writeConfirmationRecord(opts: {
+    read: () => string;
+    write: (content: string) => void;
+    dimension: string;
+    record: Record<string, unknown>;
+    /** The digest the record is anchored to; recomputed from each candidate read. */
+    anchor: string;
+    anchorOf: (raw: string) => string;
+    confirmationsOf: (raw: string) => Record<string, unknown>[];
+}): ConfirmationWriteResult;

package/dist/intent-compiler.d.ts.map

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package/dist/local-reader.d.ts

@@ -105,9 +105,4 @@ export declare function readIntentMeta(filePath: string): LocalIntentMeta | null
  * Parse a single intent.md file with YAML frontmatter.
  */
 export declare function readIntentFile(filePath: string): LocalIntent | null;
-/**
- * Parse intent.md content (frontmatter + body) into a LocalIntent. Pure: no fs, no cwd.
- * Exported so lib/intentMdParseParity.test.ts can hold the web paste-box parser
- * (lib/intentMdParse.ts) to this implementation's behavior on gate-relevant fields.
- */
 export declare function parseIntentMarkdown(content: string, fallbackId?: string): LocalIntent;

package/dist/local-reader.d.ts.map

@@ -1 +1 @@
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package/dist/readiness.d.ts

@@ -20,12 +20,12 @@ export declare function isVerificationCheckSubstantive(description: string | nul
 export declare function isObjectiveSpecific(objective: string | null | undefined): boolean;
 export declare function isOutcomeMeasurable(text: string): boolean;
 export declare const READINESS_BLOCKER_DESCRIPTIONS: Record<string, string>;
-/** Display order for the gate strip (title first, matching the Preflight page). */
 /**
  * Fold away everything that is a rewrite of the same claim, and nothing that is a change to it.
  * NFC because one glyph has two encodings; soft hyphens because editors inject them invisibly;
- * quote/dash folding and markdown emphasis because adding `**` around a word is formatting, not
- * a reword. Lowercased and whitespace-collapsed last.
+ * quote/dash folding and PAIRED markdown emphasis because adding `**` around a word is
+ * formatting, not a reword. An unpaired `*` or `_` is left alone: it is content (a wildcard),
+ * and deleting it silently kept confirmations alive across a real change to the claim. Lowercased and whitespace-collapsed last.
  */
 export declare function normalizeAnchor(value: unknown): string;
 /**
@@ -86,6 +86,11 @@ export interface DimensionDetail {
     state: DimensionState;
     /** What the reader actually read for this dimension, for quoting back. */
     extracted?: string;
+    /** Set when a confirmation or waiver moved this dimension: who vouched, and how well we know it. */
+    confirmedBy?: 'agent' | 'human';
+    assurance?: 'authenticated' | 'local-unverified';
+    /** The waiver's stated reason, for rendering the exception rather than hiding it. */
+    reason?: string;
 }
 export interface ReadinessVerdict {
     ready: boolean;
@@ -115,4 +120,7 @@ export declare function computeReadinessVerdict(spec: ReadinessSpecInput): Readi
  */
 export declare function formatReadinessFrontmatter(verdict: ReadinessVerdict): string;
 /** Human/agent-readable verdict block, stable enough to parse by line prefix. */
-export declare function formatReadinessVerdict(verdict: ReadinessVerdict, specTitle?: string): string;
+export declare function formatReadinessVerdict(verdict: ReadinessVerdict, specTitle?: string, 
+/** Override the closing repair line. The default names MCP tools, which are wrong in a CLI
+ *  reading a repo that has never installed Pathmode. */
+repairHint?: string): string;

package/dist/readiness.d.ts.map

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package/manifest.json

@@ -2,7 +2,7 @@
   "manifest_version": "0.3",
   "name": "pathmode",
   "display_name": "Pathmode",
-  "version": "1.15.0",
+  "version": "1.16.0",
   "description": "Deterministic preflight for the intent you hand to a coding agent: six calibrated gates, the exact blockers named, no model call, no key needed.",
   "long_description": "Pathmode MCP Server runs a deterministic preflight before your coding agent builds: check_intent_readiness scores an intent spec against six calibrated gates (title, objective, outcomes, constraints, edge cases, verification) and names the exact blockers, with no model call and no account. Keyless local mode works out of the box; specs live in intent.md in your repo, plain markdown you own, and skills for drafting, pressure-testing, and handing off intent ride along. Connect a Pathmode workspace with an API key to sync intent and evidence across a team, analyze dependency graphs, and verify pull requests against the outcomes you agreed to.",
   "author": {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@pathmode/mcp-server",
-  "version": "1.15.0",
+  "version": "1.16.0",
   "publishConfig": {
     "access": "public"
   },