@pan-sec/notebooklm-mcp 2026.3.3 → 2026.4.0

package/dist/tools/handlers/error-utils.js

@@ -36,4 +36,3 @@ export function getErrorAuditArgs(tool, error) {
         error: getSanitizedErrorMessage(error),
     };
 }
-//# sourceMappingURL=error-utils.js.map

package/dist/tools/handlers/gemini.d.ts

@@ -141,4 +141,3 @@ export declare function handleGetNotebookChatHistory(ctx: HandlerContext, args:
         index: number;
     }>;
 }>>;
-//# sourceMappingURL=gemini.d.ts.map

package/dist/tools/handlers/gemini.js

@@ -660,4 +660,3 @@ export async function handleGetNotebookChatHistory(ctx, args) {
         };
     }
 }
-//# sourceMappingURL=gemini.js.map

package/dist/tools/handlers/index.d.ts

@@ -284,4 +284,3 @@ export declare class ToolHandlers {
     }>>;
     cleanup(): Promise<void>;
 }
-//# sourceMappingURL=index.d.ts.map

package/dist/tools/handlers/index.js

@@ -205,4 +205,3 @@ export class ToolHandlers {
         log.info("Tool handlers cleanup complete");
     }
 }
-//# sourceMappingURL=index.js.map

package/dist/tools/handlers/notebook-creation.d.ts

@@ -72,4 +72,3 @@ export declare function handleRemoveSource(ctx: HandlerContext, args: {
     notebook_url?: string;
     source_id: string;
 }): Promise<ToolResult<RemoveSourceResult>>;
-//# sourceMappingURL=notebook-creation.d.ts.map

package/dist/tools/handlers/notebook-creation.js

@@ -68,6 +68,22 @@ export async function handleCreateNotebook(ctx, args, sendProgress) {
             sendProgress,
             browserOptions: args.browser_options || (args.show_browser ? { show: true } : undefined),
         });
+        // A notebook where sources were requested but NONE succeeded is discarded
+        // by the creator (which throws), so we never reach here for that case.
+        // Guard defensively anyway: never persist a library entry or count quota
+        // for a notebook that requested sources yet added none. (An empty `sources`
+        // request — e.g. an overflow shell notebook that gets populated later — is
+        // a legitimate zero-source case and is still added.)
+        const requestedSources = args.sources.length;
+        const addedNone = requestedSources > 0 && result.sourceCount === 0;
+        if (addedNone) {
+            log.warning(`⚠️ Notebook had no successful sources — not adding to library: ${args.name}`);
+            return {
+                success: false,
+                data: null,
+                error: "Notebook creation failed: no sources could be added",
+            };
+        }
         // Auto-add to library if requested (default: true)
         if (args.auto_add_to_library !== false) {
             try {
@@ -608,4 +624,3 @@ export async function handleRemoveSource(ctx, args) {
         };
     }
 }
-//# sourceMappingURL=notebook-creation.js.map

package/dist/tools/handlers/notebook-management.d.ts

@@ -61,4 +61,3 @@ export declare function handleSearchNotebooks(ctx: HandlerContext, args: {
  * Handle get_library_stats tool
  */
 export declare function handleGetLibraryStats(ctx: HandlerContext): Promise<ToolResult<LibraryStats>>;
-//# sourceMappingURL=notebook-management.d.ts.map

package/dist/tools/handlers/notebook-management.js

@@ -4,6 +4,7 @@
  * Standalone handler functions for notebook CRUD and library operations.
  */
 import { log } from "../../utils/logger.js";
+import { validateNotebookUrl } from "../../utils/security.js";
 import { getSanitizedErrorMessage } from "./error-utils.js";
 async function withNotebookHandler(toolName, fn) {
     try {
@@ -93,7 +94,12 @@ export async function handleUpdateNotebook(ctx, args) {
     log.info(`🔧 [TOOL] update_notebook called`);
     log.info(`  ID: ${args.id}`);
     return withNotebookHandler("update_notebook", () => {
-        const notebook = ctx.library.updateNotebook(args);
+        // Validate/normalize the URL through the canonical NotebookLM validator
+        // before storing (matches create_notebook / add_source handlers).
+        const safeArgs = args.url !== undefined
+            ? { ...args, url: validateNotebookUrl(args.url) }
+            : args;
+        const notebook = ctx.library.updateNotebook(safeArgs);
         log.success(`✅ [TOOL] update_notebook completed: ${notebook.name}`);
         return {
             success: true,
@@ -165,4 +171,3 @@ export async function handleGetLibraryStats(ctx) {
         };
     });
 }
-//# sourceMappingURL=notebook-management.js.map

package/dist/tools/handlers/session-management.d.ts

@@ -63,4 +63,3 @@ export declare function handleGetHealth(ctx: HandlerContext, args?: {
     troubleshooting_tip?: string;
 }>>;
 export {};
-//# sourceMappingURL=session-management.d.ts.map

package/dist/tools/handlers/session-management.js

@@ -206,4 +206,3 @@ export async function handleGetHealth(ctx, args) {
         };
     }
 }
-//# sourceMappingURL=session-management.js.map

package/dist/tools/handlers/system.d.ts

@@ -99,4 +99,3 @@ export declare function handleCleanupData(_ctx: HandlerContext, args: {
         }>;
     };
 }>>;
-//# sourceMappingURL=system.d.ts.map

package/dist/tools/handlers/system.js

@@ -307,4 +307,3 @@ export async function handleCleanupData(_ctx, args) {
         };
     }
 }
-//# sourceMappingURL=system.js.map

package/dist/tools/handlers/types.d.ts

@@ -16,4 +16,3 @@ export interface HandlerContext {
     rateLimiter: RateLimiter;
     getGeminiClient: () => GeminiClient | null;
 }
-//# sourceMappingURL=types.d.ts.map

package/dist/tools/handlers/types.js

@@ -2,4 +2,3 @@
  * Shared types for handler domain modules
  */
 export {};
-//# sourceMappingURL=types.js.map

package/dist/tools/handlers/webhooks.d.ts

@@ -31,4 +31,3 @@ export declare function handleRemoveWebhook(_ctx: HandlerContext, args: {
     removed: boolean;
     id: string;
 }>>;
-//# sourceMappingURL=webhooks.d.ts.map

package/dist/tools/handlers/webhooks.js

@@ -121,4 +121,3 @@ export async function handleRemoveWebhook(_ctx, args) {
         return { success: false, data: null, error: errorMessage };
     }
 }
-//# sourceMappingURL=webhooks.js.map

package/dist/tools/icons.d.ts

@@ -15,4 +15,3 @@ export declare const toolIcons: Record<string, Icon[]>;
  * Get icons for a tool by name
  */
 export declare function getToolIcons(toolName: string): Icon[] | undefined;
-//# sourceMappingURL=icons.d.ts.map

package/dist/tools/icons.js

@@ -144,4 +144,3 @@ export const toolIcons = {
 export function getToolIcons(toolName) {
     return toolIcons[toolName];
 }
-//# sourceMappingURL=icons.js.map

package/dist/tools/index.d.ts

@@ -8,4 +8,3 @@ export { ToolHandlers } from "./handlers/index.js";
 export { getToolIcons, toolIcons } from "./icons.js";
 export { getToolMetadata, toolMetadata } from "./annotations.js";
 export type { ToolMetadata } from "./annotations.js";
-//# sourceMappingURL=index.d.ts.map

package/dist/tools/index.js

@@ -7,4 +7,3 @@ export { buildToolDefinitions } from "./definitions.js";
 export { ToolHandlers } from "./handlers/index.js";
 export { getToolIcons, toolIcons } from "./icons.js";
 export { getToolMetadata, toolMetadata } from "./annotations.js";
-//# sourceMappingURL=index.js.map

package/dist/types.d.ts

@@ -82,4 +82,3 @@ export interface ServerState {
     sessionManager: SessionManager;
     authManager: AuthManager;
 }
-//# sourceMappingURL=types.d.ts.map

package/dist/types.js

@@ -2,4 +2,3 @@
  * Global type definitions for NotebookLM MCP Server
  */
 export {};
-//# sourceMappingURL=types.js.map

package/dist/utils/audit-logger.d.ts

@@ -54,6 +54,8 @@ export declare class AuditLogger {
     private config;
     private currentLogFile;
     private previousHash;
+    private checkpointPath;
+    private checkpointKey;
     private writeQueue;
     private pendingEvents;
     private hashChainWarningLogged;
@@ -152,6 +154,15 @@ export declare class AuditLogger {
      */
     flush(): Promise<void>;
     private getLogFilePathForTimestamp;
+    /** Compute the HMAC signature for a checkpoint hash, or null when no key is set. */
+    private signCheckpoint;
+    /**
+     * Persist the latest chain hash to the external checkpoint (outside the log dir).
+     * Best-effort: a failure here must never break audit writes.
+     */
+    private writeCheckpoint;
+    /** Read the external checkpoint, returning null if absent or unreadable. */
+    private readCheckpoint;
     private disableHashChainForSession;
     private handleWriteFailure;
     private registerProcessHandlers;
@@ -177,4 +188,3 @@ export declare const audit: {
     configChange: (setting: string, oldValue: unknown, newValue: unknown, changedBy?: string) => Promise<void>;
     retention: (action: "cleanup" | "archive" | "delete", dataType: string, count: number, details?: Record<string, unknown>) => Promise<void>;
 };
-//# sourceMappingURL=audit-logger.d.ts.map

package/dist/utils/audit-logger.js

@@ -16,7 +16,7 @@ import path from "path";
 import crypto from "crypto";
 import { CONFIG } from "../config.js";
 import { sanitizeForLogging } from "./security.js";
-import { withLock } from "./file-lock.js";
+import { withLock, STALE_LOCK_THRESHOLD_MS } from "./file-lock.js";
 import { logger } from "./logger.js";
 import { mkdirSecure, appendFileSecure, PERMISSION_MODES, } from "./file-permissions.js";
 /**
@@ -43,6 +43,21 @@ export class AuditLogger {
     config;
     currentLogFile = "";
     previousHash = "GENESIS";
+    // M6: external tamper anchor (chosen over a co-located sequence counter — see note
+    // below). The checkpoint persists the latest chain hash to a sidecar file OUTSIDE
+    // the audit log dir. Threat model, honestly stated:
+    //   - Location separation defends only against tampering scoped to the audit-*.jsonl
+    //     files (a tool/path that rewrites the logs but doesn't know about the sidecar).
+    //   - An attacker with broad filesystem write can also rewrite the sidecar. The HMAC
+    //     SIGNATURE is the only real defense against that, and only if
+    //     NLMCP_AUDIT_CHECKPOINT_KEY is stored where the attacker cannot read it.
+    // A co-located sequence counter was rejected: the same broad-write attacker would
+    // renumber it contiguously, so it would not close the stated threat, and it would
+    // touch the hashed payload (breaking the existing chain tests). The checkpoint leaves
+    // the hashed payload untouched. Set NLMCP_AUDIT_CHECKPOINT_PATH to place the sidecar
+    // on a different volume/trust domain for genuine location separation.
+    checkpointPath = "";
+    checkpointKey = process.env.NLMCP_AUDIT_CHECKPOINT_KEY;
     writeQueue = Promise.resolve();
     pendingEvents = [];
     hashChainWarningLogged = false;
@@ -64,6 +79,14 @@ export class AuditLogger {
         this.config = { ...getAuditConfig(), ...config };
         AuditLogger.instances.add(this);
         this.registerProcessHandlers();
+        // M6: place the tamper-anchor checkpoint OUTSIDE the audit log dir but in a
+        // directory that is guaranteed to exist at write time. The parent of logDir
+        // (dataDir in production) is created by ensureLogDirectory() in this constructor
+        // before any checkpoint write; configDir is intentionally never created by the app
+        // (see config.ts), so we do NOT use it — that would make this a silent no-op.
+        // NLMCP_AUDIT_CHECKPOINT_PATH lets ops relocate the sidecar to another trust domain.
+        this.checkpointPath = process.env.NLMCP_AUDIT_CHECKPOINT_PATH
+            || path.join(path.dirname(this.config.logDir), ".audit-checkpoint.json");
         if (this.config.enabled) {
             this.ensureLogDirectory();
             this.initializeLogFile();
@@ -100,14 +123,22 @@ export class AuditLogger {
                 }
             }
             catch (err) {
-                // Log corruption rather than silently resetting — silent reset lets tampered chains pass (I217)
-                logger.warning(`audit log chain corruption detected in ${this.currentLogFile}: ${err instanceof Error ? err.message : String(err)}. Restarting hash chain.`);
+                // A corrupt tail on the current day must NOT silently reset to a fresh GENESIS
+                // chain — that would let an attacker append one garbage byte to force a chain
+                // restart and launder the break behind a new valid-looking chain (M7, was I217).
+                // Instead, quarantine the chain for this session (disable hash chaining) and
+                // surface a security-level warning. The "corruption detected" wording is also
+                // relied upon by tests/audit-logger.test.ts.
+                logger.warning(`audit log chain corruption detected in ${this.currentLogFile}: ${err instanceof Error ? err.message : String(err)}. Hash chain quarantined for this session.`);
+                this.disableHashChainForSession();
                 this.previousHash = "GENESIS";
             }
         }
         // If today's file has no content yet, link the chain from the previous day's
         // last hash so cross-day gaps cannot be exploited by replacing a whole day's file.
-        if (this.previousHash === "GENESIS") {
+        // Skip this if the chain has been quarantined (M7) so a corrupted session does not
+        // re-link to a previous hash and produce a fresh valid-looking chain.
+        if (this.config.hashChainEnabled && this.previousHash === "GENESIS") {
             const prevHash = this.findPreviousDayLastHash(today);
             if (prevHash) {
                 this.previousHash = prevHash;
@@ -156,8 +187,12 @@ export class AuditLogger {
     cleanOldLogs() {
         try {
             const files = fs.readdirSync(this.config.logDir);
+            // Filenames are UTC dates (toISOString) and new Date("YYYY-MM-DD") parses as
+            // UTC midnight, so compute the cutoff at UTC midnight too — using local
+            // setDate/getDate would skew the comparison by up to a day near TZ boundaries (L13).
             const cutoffDate = new Date();
-            cutoffDate.setDate(cutoffDate.getDate() - this.config.retentionDays);
+            cutoffDate.setUTCHours(0, 0, 0, 0);
+            cutoffDate.setUTCDate(cutoffDate.getUTCDate() - this.config.retentionDays);
             for (const file of files) {
                 if (!file.startsWith("audit-") || !file.endsWith(".jsonl"))
                     continue;
@@ -197,13 +232,26 @@ export class AuditLogger {
         const sanitized = {};
         for (const [key, value] of Object.entries(details)) {
             const lowerKey = key.toLowerCase();
-            // Skip sensitive keys entirely
-            if (/password|secret|token|key|credential|auth/i.test(key)) {
+            // Skip sensitive keys entirely. Anchored to exact key names (L14) so benign keys
+            // like author / keywords / tokenCount / monkey are no longer stomped to [REDACTED]
+            // by a loose substring match. The bare `auth` key is kept as an exact alternative so
+            // we retain full parity with the old loose regex (which matched `auth`) — `author`
+            // etc. are not exactly "auth" so they still pass through. accessToken / refreshToken
+            // / secretKey etc. are NOT matched here on purpose — their string values are still
+            // caught by the broad substring net in the string-value branch below, which we
+            // deliberately keep loose so real compound-named secrets do not leak.
+            if (/^(password|secret|token|api_?key|credential|auth|authorization)$/i.test(key)) {
                 sanitized[key] = "[REDACTED]";
                 continue;
             }
             // Sanitize string values
             if (typeof value === "string") {
+                // Intentionally broad (substring) safety net: this is what keeps camelCase
+                // compound secret keys (accessToken, refreshToken, secretKey, authToken) redacted
+                // now that the key-path above is exact-match (L14). Accepted tradeoff: a benign
+                // key holding a long (>8 char) string and containing one of these substrings
+                // (e.g. "keywords", "monkey") is still redacted here — preferred over leaking a
+                // real secret.
                 if (value.length > 8 &&
                     /password|token|secret|key|credential/.test(lowerKey)) {
                     sanitized[key] = "[REDACTED]";
@@ -237,23 +285,35 @@ export class AuditLogger {
             return;
         }
         const logFile = this.getLogFilePathForTimestamp(event.timestamp);
-        const line = `${JSON.stringify(event)}\n`;
         try {
             await withLock(logFile, async () => {
                 if (!this.pendingEvents.includes(event)) {
                     return;
                 }
+                // Stamp the chain link and compute the hash inside the serialized critical section
+                // so the pointer advances atomically per event in write order (H20). Computing this
+                // at log() time would let concurrent calls share a previousHash and fork the chain.
+                if (this.config.hashChainEnabled) {
+                    event.previousHash = this.previousHash;
+                    const { hash: _ignored, ...eventWithoutHash } = event;
+                    event.hash = this.computeHash(eventWithoutHash);
+                }
+                const line = `${JSON.stringify(event)}\n`;
                 this.currentLogFile = logFile;
                 appendFileSecure(logFile, line, PERMISSION_MODES.OWNER_READ_WRITE);
                 this.pendingEvents = this.pendingEvents.filter((pendingEvent) => pendingEvent !== event);
                 // Advance the chain pointer only after the write physically succeeds (I228)
                 if (this.config.hashChainEnabled && event.hash) {
                     this.previousHash = event.hash;
+                    // Anchor the latest hash externally after it advances (M6).
+                    this.writeCheckpoint(event.hash);
                 }
             });
             // Fan-out to subscribers after successful write (I244)
             for (const sub of this.eventSubscribers) {
-                sub(event).catch(() => { }); // fire-and-forget, never block audit writes
+                // Fire-and-forget so a slow/failing SIEM/compliance subscriber never blocks
+                // audit writes, but surface the failure at debug level so it is observable (L12).
+                sub(event).catch(err => logger.debug(`audit-logger: subscriber fan-out error: ${err instanceof Error ? err.message : String(err)}`));
             }
         }
         catch (error) {
@@ -278,23 +338,20 @@ export class AuditLogger {
         const sanitizedDetails = this.config.includeDetails
             ? this.sanitizeDetails(details)
             : {};
-        const eventWithoutHash = {
+        // The previousHash and hash are NOT computed here. Concurrent log() calls would
+        // otherwise read the same this.previousHash before any write completes and fork the
+        // chain. Instead they are assigned inside flushEvent's serialized critical section, in
+        // write order, so the chain pointer advances atomically per event (H20).
+        const event = {
             timestamp: new Date().toISOString(),
             eventType,
             eventName,
             success,
             duration_ms,
             details: sanitizedDetails,
-            previousHash: this.config.hashChainEnabled ? this.previousHash : "",
+            previousHash: "",
+            hash: "",
         };
-        const hash = this.config.hashChainEnabled
-            ? this.computeHash(eventWithoutHash)
-            : "";
-        const event = {
-            ...eventWithoutHash,
-            hash,
-        };
-        // previousHash is updated inside flushEvent after the write succeeds (I228)
         await this.writeEvent(event);
     }
     // ============================================================================
@@ -389,8 +446,21 @@ export class AuditLogger {
      */
     summarizeArgs(args) {
         const summary = {};
+        // M8: free-text fields from compliance tools (report_security_incident
+        // title/description, request_data_erasure reason, submit_dsar details) carry
+        // user-supplied PII. sanitizeDetails only redacts by KEY name and short values pass
+        // through verbatim, so these would persist in the audit log for the 2555-day
+        // retention. Hash + length-stamp them here (the single choke point for all tool
+        // calls) so the audit record stays useful (correlatable, length known) without
+        // storing raw PII.
+        const FREE_TEXT_PII = /^(description|reason|details|title)$/i;
         for (const [key, value] of Object.entries(args)) {
             if (typeof value === "string") {
+                if (FREE_TEXT_PII.test(key)) {
+                    const digest = crypto.createHash("sha256").update(value).digest("hex").slice(0, 16);
+                    summary[key] = `[redacted PII, ${value.length} chars, sha256:${digest}]`;
+                    continue;
+                }
                 // Log length for long strings, actual value for short ones
                 if (value.length > 100) {
                     summary[key] = `[string, ${value.length} chars]`;
@@ -467,6 +537,31 @@ export class AuditLogger {
                     errors.push(`Line ${i + 1}: Invalid JSON`);
                 }
             }
+            // M6: verify against the external tamper anchor. Log-file-scoped tampering that
+            // recomputes a self-consistent chain but does not also update the out-of-dir
+            // sidecar is caught here; broad filesystem tampering is caught only when an HMAC
+            // key (NLMCP_AUDIT_CHECKPOINT_KEY) is configured and held out of reach.
+            // Tolerate a missing checkpoint (first run / arbitrary historical file) — only
+            // flag when a checkpoint exists, so this never spuriously fails a clean log.
+            if (this.config.hashChainEnabled && lines.length > 0) {
+                const checkpoint = this.readCheckpoint();
+                if (checkpoint) {
+                    // Only anchor-check the live current-day file: the checkpoint tracks the
+                    // latest hash written, which belongs to the most recent file.
+                    const isCurrentFile = path.resolve(file) === path.resolve(this.currentLogFile);
+                    if (isCurrentFile) {
+                        if (this.checkpointKey) {
+                            const expectedSig = this.signCheckpoint(checkpoint.hash);
+                            if (!checkpoint.signature || checkpoint.signature !== expectedSig) {
+                                errors.push("Tamper anchor: checkpoint signature invalid (checkpoint may have been forged or key changed).");
+                            }
+                        }
+                        if (checkpoint.hash !== expectedPreviousHash) {
+                            errors.push(`Tamper anchor: external checkpoint hash does not match log tail. Expected ${checkpoint.hash}, log ends at ${expectedPreviousHash}. The log may have been rewritten.`);
+                        }
+                    }
+                }
+            }
             return { valid: errors.length === 0, errors };
         }
         catch (e) {
@@ -483,6 +578,51 @@ export class AuditLogger {
         const date = timestamp.split("T")[0];
         return path.join(this.config.logDir, `audit-${date}.jsonl`);
     }
+    // ============================================================================
+    // M6: external tamper-anchor checkpoint
+    // ============================================================================
+    /** Compute the HMAC signature for a checkpoint hash, or null when no key is set. */
+    signCheckpoint(hash) {
+        if (!this.checkpointKey)
+            return null;
+        return crypto.createHmac("sha256", this.checkpointKey).update(hash).digest("hex");
+    }
+    /**
+     * Persist the latest chain hash to the external checkpoint (outside the log dir).
+     * Best-effort: a failure here must never break audit writes.
+     */
+    writeCheckpoint(hash) {
+        if (!this.config.hashChainEnabled || !hash || hash === "GENESIS")
+            return;
+        try {
+            const payload = {
+                hash,
+                updatedAt: new Date().toISOString(),
+            };
+            const signature = this.signCheckpoint(hash);
+            if (signature)
+                payload.signature = signature;
+            fs.writeFileSync(this.checkpointPath, JSON.stringify(payload), { mode: 0o600 });
+        }
+        catch (err) {
+            logger.debug(`audit-logger: writing tamper-anchor checkpoint: ${err instanceof Error ? err.message : String(err)}`);
+        }
+    }
+    /** Read the external checkpoint, returning null if absent or unreadable. */
+    readCheckpoint() {
+        try {
+            if (!fs.existsSync(this.checkpointPath))
+                return null;
+            const parsed = JSON.parse(fs.readFileSync(this.checkpointPath, "utf-8"));
+            if (typeof parsed.hash !== "string" || parsed.hash.length === 0)
+                return null;
+            return { hash: parsed.hash, signature: parsed.signature };
+        }
+        catch (err) {
+            logger.debug(`audit-logger: reading tamper-anchor checkpoint: ${err instanceof Error ? err.message : String(err)}`);
+            return null;
+        }
+    }
     disableHashChainForSession() {
         if (!this.hashChainWarningLogged) {
             logger.warning(AuditLogger.MISSING_HASH_WARNING);
@@ -507,9 +647,19 @@ export class AuditLogger {
         process.on("beforeExit", () => {
             AuditLogger.flushAllSync();
         });
+        // Mirror SIGTERM for SIGINT (Ctrl-C) and SIGHUP so buffered audit events are
+        // flushed synchronously on those signals too (M5). The process entry point owns
+        // termination (it calls process.exit after its own async shutdown), so these are
+        // additive flush-only safety nets and do not suppress termination or hang.
         process.on("SIGTERM", () => {
             AuditLogger.flushAllSync();
         });
+        process.on("SIGINT", () => {
+            AuditLogger.flushAllSync();
+        });
+        process.on("SIGHUP", () => {
+            AuditLogger.flushAllSync();
+        });
         AuditLogger.processHandlersRegistered = true;
     }
     static flushAllSync() {
@@ -521,6 +671,19 @@ export class AuditLogger {
         if (!this.config.enabled || this.pendingEvents.length === 0) {
             return;
         }
+        // Re-chain the batch in write order before serializing. Buffered events were created
+        // with empty previousHash/hash (those are stamped inside flushEvent's lock on the async
+        // path); on the shutdown path we must stamp them here, advancing the running pointer
+        // per event, or the chain forks. Uses the same computeHash as the normal path so
+        // verifyIntegrity passes (H20).
+        if (this.config.hashChainEnabled) {
+            for (const event of this.pendingEvents) {
+                event.previousHash = this.previousHash;
+                const { hash: _ignored, ...eventWithoutHash } = event;
+                event.hash = this.computeHash(eventWithoutHash);
+                this.previousHash = event.hash;
+            }
+        }
         const groupedEvents = new Map();
         for (const event of this.pendingEvents) {
             const logFile = this.getLogFilePathForTimestamp(event.timestamp);
@@ -539,6 +702,10 @@ export class AuditLogger {
             }
             this.currentLogFile = logFile;
         }
+        // Anchor the final advanced hash externally on the shutdown path too (M6).
+        if (this.config.hashChainEnabled && this.previousHash && this.previousHash !== "GENESIS") {
+            this.writeCheckpoint(this.previousHash);
+        }
         this.pendingEvents = [];
     }
     writeWithSyncLock(logFile, lines) {
@@ -567,7 +734,9 @@ export class AuditLogger {
                 try {
                     const content = fs.readFileSync(lockPath, "utf-8");
                     const existing = JSON.parse(content);
-                    if (typeof existing.timestamp === "number" && Date.now() - existing.timestamp > 30000) {
+                    // Use the shared stale-lock threshold (L15) so this sync shutdown path and the
+                    // async FileLock util agree on staleness for locks on the SAME audit files.
+                    if (typeof existing.timestamp === "number" && Date.now() - existing.timestamp > STALE_LOCK_THRESHOLD_MS) {
                         fs.unlinkSync(lockPath);
                         continue;
                     }
@@ -631,4 +800,3 @@ export const audit = {
     configChange: (setting, oldValue, newValue, changedBy) => getAuditLogger().logConfigChange(setting, oldValue, newValue, changedBy),
     retention: (action, dataType, count, details) => getAuditLogger().logRetentionEvent(action, dataType, count, details),
 };
-//# sourceMappingURL=audit-logger.js.map

package/dist/utils/cleanup-manager.d.ts

@@ -130,4 +130,3 @@ export declare class CleanupManager {
         claudeProjectsPath: string;
     };
 }
-//# sourceMappingURL=cleanup-manager.d.ts.map

package/dist/utils/cleanup-manager.js

@@ -671,4 +671,3 @@ export class CleanupManager {
         };
     }
 }
-//# sourceMappingURL=cleanup-manager.js.map

package/dist/utils/cli-handler.d.ts

@@ -13,4 +13,3 @@ export declare class CliHandler {
     private handleReset;
     private printHelp;
 }
-//# sourceMappingURL=cli-handler.d.ts.map

package/dist/utils/cli-handler.js

@@ -99,4 +99,3 @@ Profiles:
     `);
     }
 }
-//# sourceMappingURL=cli-handler.js.map

package/dist/utils/crypto.d.ts

@@ -57,20 +57,23 @@ interface ClassicalEncryptedData {
     version: number;
     algorithm: string;
     nonce: string;
-    salt: string;
+    salt?: string;
     ciphertext: string;
 }
 /**
- * Derive a key from a passphrase using PBKDF2
+ * Thrown when an encrypted file exists but cannot be decrypted (e.g. wrong
+ * key after rotation, corruption, or tampering). Distinct from a genuinely
+ * absent file (load() returns null), so callers can avoid overwriting
+ * good-but-undecryptable state.
  */
-export declare function deriveKey(passphrase: string, salt: Buffer, iterations?: number): Buffer;
+export declare class DecryptionError extends Error {
+    readonly file: string;
+    constructor(message: string, file: string);
+}
 /**
- * Generate a machine-derived key based on hardware/OS identifiers
- *
- * Note: This provides obscurity, not true security. It's a fallback
- * when no user key is provided.
+ * Derive a key from a passphrase using PBKDF2
  */
-export declare function getMachineKey(): string;
+export declare function deriveKey(passphrase: string, salt: Buffer, iterations?: number): Buffer;
 export declare function getOrCreateMachineKey(keyPath: string): Buffer;
 /**
  * Generate ML-KEM key pair for post-quantum encryption
@@ -114,6 +117,13 @@ export declare class SecureStorage {
     private pqKeyPair;
     private initialized;
     private keyStorePath;
+    /**
+     * Captured at construction, before config.enabled can be mutated by
+     * initialize()/initializeClassicalKey(). Records whether the caller
+     * actually intended encryption. Used to fail closed: if encryption was
+     * expected but is unavailable, we refuse to write plaintext.
+     */
+    private readonly encryptionExpected;
     constructor(config?: Partial<EncryptionConfig>);
     /**
      * Initialize the secure storage (derive/load keys)
@@ -175,4 +185,3 @@ export declare class SecureStorage {
  */
 export declare function getSecureStorage(): SecureStorage;
 export {};
-//# sourceMappingURL=crypto.d.ts.map