@oxagen/cli 0.6.0 → 0.6.2

package/package.json

@@ -1,16 +1,22 @@
 {
   "name": "@oxagen/cli",
-  "version": "0.6.0",
+  "version": "0.6.2",
   "description": "Oxagen CLI — agentic coding powered by Oxagen's knowledge-graph context engine",
   "type": "module",
-  "main": "./dist/index.js",
   "bin": {
-    "oxagen": "./dist/index.js"
+    "oxagen": "./oxagen.mjs"
   },
   "files": [
-    "dist",
+    "oxagen.mjs",
     "README.md"
   ],
+  "engines": {
+    "node": ">=20"
+  },
+  "optionalDependencies": {
+    "duckdb": "1.3.0",
+    "blake3": "2.1.7"
+  },
   "keywords": [
     "oxagen",
     "cli",
@@ -26,30 +32,7 @@
     "url": "https://github.com/oxagen/oxagen-monorepo.git",
     "directory": "apps/cli"
   },
-  "scripts": {
-    "dev": "tsx src/index.tsx",
-    "start": "tsx src/index.tsx",
-    "build": "tsc",
-    "typecheck": "tsc --noEmit",
-    "lint": "eslint src --max-warnings 0",
-    "test:unit": "vitest run"
-  },
-  "dependencies": {
-    "@inkjs/ui": "2.0.0",
-    "@oxagen/engram": "workspace:*",
-    "ai": "6.0.197",
-    "commander": "12.1.0",
-    "ink": "7.1.0",
-    "react": "19.2.6",
-    "zod": "3.25.76"
-  },
-  "devDependencies": {
-    "@types/node": "25.9.1",
-    "@types/react": "19.2.15",
-    "@vitest/coverage-v8": "2.1.9",
-    "ink-testing-library": "4.0.0",
-    "tsx": "4.22.3",
-    "typescript": "6.0.3",
-    "vitest": "2.1.9"
+  "publishConfig": {
+    "access": "public"
   }
 }

package/dist/agent/__tests__/code-graph.test.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=code-graph.test.d.ts.map

package/dist/agent/__tests__/code-graph.test.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"code-graph.test.d.ts","sourceRoot":"","sources":["../../../src/agent/__tests__/code-graph.test.ts"],"names":[],"mappings":""}

package/dist/agent/__tests__/code-graph.test.js

@@ -1,83 +0,0 @@
-/**
- * Code-graph retrieval — proves the agent can answer structural questions about
- * a real on-disk project: symbol search, file-symbol listing, and (the part
- * that was previously broken) import/dependent resolution for impact analysis.
- */
-import { describe, it, expect, beforeAll, afterAll } from "vitest";
-import { promises as fs } from "node:fs";
-import { tmpdir } from "node:os";
-import { join } from "node:path";
-import { queryCodeGraph, codeGraphStats, clearCodeGraphCache, } from "../code-graph.js";
-let root = "";
-beforeAll(async () => {
-    root = await fs.mkdtemp(join(tmpdir(), "oxagen-cg-"));
-    await fs.writeFile(join(root, "alpha.ts"), [
-        "export function computeAlpha() {",
-        "  return 1;",
-        "}",
-        "export interface AlphaShape {",
-        "  x: number;",
-        "}",
-    ].join("\n"));
-    await fs.writeFile(join(root, "beta.ts"), [
-        'import { computeAlpha } from "./alpha.js";',
-        "export class BetaEngine {}",
-        "export function runBeta() {",
-        "  return computeAlpha();",
-        "}",
-    ].join("\n"));
-    await fs.mkdir(join(root, "sub"), { recursive: true });
-    await fs.writeFile(join(root, "sub", "gamma.ts"), [
-        'import { BetaEngine } from "../beta.js";',
-        'export type GammaKind = "a" | "b";',
-    ].join("\n"));
-});
-afterAll(async () => {
-    clearCodeGraphCache();
-    if (root)
-        await fs.rm(root, { recursive: true, force: true });
-});
-describe("code-graph retrieval", () => {
-    it("search finds where a symbol is defined", async () => {
-        const out = await queryCodeGraph(root, "search", "computeAlpha");
-        expect(out).toContain("computeAlpha");
-        expect(out).toContain("alpha.ts");
-        expect(out).toContain("function");
-    });
-    it("search matches classes and is case-insensitive", async () => {
-        const out = await queryCodeGraph(root, "search", "betaengine");
-        expect(out).toContain("BetaEngine");
-        expect(out).toContain("class");
-    });
-    it("file_symbols lists the symbols a file defines", async () => {
-        const out = await queryCodeGraph(root, "file_symbols", "beta.ts");
-        expect(out).toContain("BetaEngine");
-        expect(out).toContain("runBeta");
-    });
-    it("dependents resolves who imports a file (impact analysis)", async () => {
-        // beta.ts imports alpha.ts → alpha's dependents include beta.ts
-        const alphaDeps = await queryCodeGraph(root, "dependents", "alpha.ts");
-        expect(alphaDeps).toContain("beta.ts");
-        // sub/gamma.ts imports ../beta.js → beta's dependents include sub/gamma.ts
-        const betaDeps = await queryCodeGraph(root, "dependents", "beta.ts");
-        expect(betaDeps).toContain("sub/gamma.ts");
-    });
-    it("imports resolves a file's local imports", async () => {
-        const betaImports = await queryCodeGraph(root, "imports", "beta.ts");
-        expect(betaImports).toContain("alpha.ts");
-        const gammaImports = await queryCodeGraph(root, "imports", "sub/gamma.ts");
-        expect(gammaImports).toContain("beta.ts");
-    });
-    it("reports a clear miss for unknown symbols and files", async () => {
-        expect(await queryCodeGraph(root, "search", "doesNotExist")).toContain("No symbols matching");
-        expect(await queryCodeGraph(root, "dependents", "nope.ts")).toContain("No file matching");
-    });
-    it("stats reflect the indexed fixture", async () => {
-        const stats = await codeGraphStats(root);
-        expect(stats.files).toBe(3);
-        // computeAlpha, AlphaShape, BetaEngine, runBeta, GammaKind
-        expect(stats.symbols).toBeGreaterThanOrEqual(5);
-        expect(stats.edges).toBeGreaterThan(0);
-    });
-});
-//# sourceMappingURL=code-graph.test.js.map

package/dist/agent/__tests__/code-graph.test.js.map

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package/dist/agent/__tests__/evaluator.test.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=evaluator.test.d.ts.map

package/dist/agent/__tests__/evaluator.test.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"evaluator.test.d.ts","sourceRoot":"","sources":["../../../src/agent/__tests__/evaluator.test.ts"],"names":[],"mappings":""}

package/dist/agent/__tests__/evaluator.test.js

@@ -1,96 +0,0 @@
-/**
- * Prompt evaluator — proves the cheap front-of-pipeline call returns the model's
- * structured read, clamps out-of-range scores, never drops intent to an empty
- * rewrite, and degrades to a deterministic heuristic when the model call fails.
- * The model call is mocked, so no gateway is touched.
- */
-import { describe, it, expect, beforeEach, vi } from "vitest";
-vi.mock("ai", () => ({ generateObject: vi.fn() }));
-vi.mock("../../lib/config.js", () => ({ readConfig: () => ({}) }));
-import { generateObject } from "ai";
-import { evaluatePrompt } from "../evaluator.js";
-const mockGen = generateObject;
-beforeEach(() => {
-    delete process.env["OXAGEN_LLM_EVALUATOR"];
-    delete process.env["OXAGEN_LLM_FAST"];
-});
-describe("evaluatePrompt", () => {
-    it("returns the model's structured evaluation on the fast tier", async () => {
-        mockGen.mockResolvedValueOnce({
-            object: {
-                completeness: 80,
-                complexity: 40,
-                recommendedTier: "balanced",
-                missing: ["which file"],
-                contextQueries: ["loginUser"],
-                refinedPrompt: "fix loginUser null check",
-                removed: ["please"],
-                reasoning: "clear ask",
-            },
-            usage: { inputTokens: 10, outputTokens: 5 },
-        });
-        const ev = await evaluatePrompt({ prompt: "please fix loginUser" });
-        expect(ev.fallback).toBe(false);
-        expect(ev.completeness).toBe(80);
-        expect(ev.recommendedTier).toBe("balanced");
-        expect(ev.contextQueries).toEqual(["loginUser"]);
-        expect(ev.refinedPrompt).toBe("fix loginUser null check");
-        expect(ev.model).toContain("haiku");
-        expect(ev.usage.inputTokens).toBe(10);
-    });
-    it("clamps scores into 0–100 and rounds them", async () => {
-        mockGen.mockResolvedValueOnce({
-            object: {
-                completeness: 150,
-                complexity: -20,
-                recommendedTier: "fast",
-                missing: [],
-                contextQueries: [],
-                refinedPrompt: "x",
-                removed: [],
-                reasoning: "r",
-            },
-            usage: {},
-        });
-        const ev = await evaluatePrompt({ prompt: "do x" });
-        expect(ev.completeness).toBe(100);
-        expect(ev.complexity).toBe(0);
-    });
-    it("keeps the original prompt when the model returns an empty rewrite", async () => {
-        mockGen.mockResolvedValueOnce({
-            object: {
-                completeness: 50,
-                complexity: 50,
-                recommendedTier: "fast",
-                missing: [],
-                contextQueries: [],
-                refinedPrompt: "   ",
-                removed: [],
-                reasoning: "r",
-            },
-            usage: {},
-        });
-        const ev = await evaluatePrompt({ prompt: "keep me intact" });
-        expect(ev.refinedPrompt).toBe("keep me intact");
-    });
-    it("falls back to a heuristic when the model call throws", async () => {
-        mockGen.mockRejectedValueOnce(new Error("gateway down"));
-        const ev = await evaluatePrompt({ prompt: "implement the stripe billing refund flow" });
-        expect(ev.fallback).toBe(true);
-        // A high-stakes billing prompt routes to precise → complexity 85.
-        expect(ev.recommendedTier).toBe("precise");
-        expect(ev.complexity).toBe(85);
-        expect(ev.refinedPrompt).toBe("implement the stripe billing refund flow");
-        expect(ev.usage.costUsd).toBe(0);
-    });
-    it("heuristic completeness tracks prompt length", async () => {
-        mockGen.mockRejectedValue(new Error("down"));
-        const short = await evaluatePrompt({ prompt: "fix it" });
-        expect(short.completeness).toBe(45);
-        const long = await evaluatePrompt({
-            prompt: "a".repeat(200) + " refactor and debug the module thoroughly",
-        });
-        expect(long.completeness).toBe(80);
-    });
-});
-//# sourceMappingURL=evaluator.test.js.map

package/dist/agent/__tests__/evaluator.test.js.map

@@ -1 +0,0 @@
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package/dist/agent/__tests__/fleet-memory.test.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=fleet-memory.test.d.ts.map

package/dist/agent/__tests__/fleet-memory.test.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"fleet-memory.test.d.ts","sourceRoot":"","sources":["../../../src/agent/__tests__/fleet-memory.test.ts"],"names":[],"mappings":""}

package/dist/agent/__tests__/fleet-memory.test.js

@@ -1,107 +0,0 @@
-/**
- * Fleet memory — proves lessons are durably recorded as JSON Lines and that
- * lexical recall ranks by term overlap, file overlap, and weight. Each test runs
- * against an isolated $HOME so it never touches the developer's real store.
- */
-import { describe, it, expect, beforeEach, afterEach } from "vitest";
-import { mkdtempSync, rmSync, writeFileSync, mkdirSync } from "node:fs";
-import { tmpdir, homedir } from "node:os";
-import { join } from "node:path";
-import { openFleetMemory, formatLessons } from "../fleet/memory.js";
-let home = "";
-let prevHome = "";
-const cwd = "/work/myproj";
-beforeEach(() => {
-    prevHome = process.env["HOME"] ?? "";
-    home = mkdtempSync(join(tmpdir(), "oxagen-mem-home-"));
-    process.env["HOME"] = home;
-});
-afterEach(() => {
-    process.env["HOME"] = prevHome;
-    if (home)
-        rmSync(home, { recursive: true, force: true });
-});
-describe("record + all", () => {
-    it("persists records and reads them back newest-first", () => {
-        const mem = openFleetMemory(cwd);
-        mem.record({ kind: "routine-change", weight: "low", lesson: "first lesson", files: [], outcome: "success" });
-        mem.record({ kind: "gotcha", weight: "high", lesson: "second lesson", files: ["a.ts"], outcome: "failure" });
-        const all = mem.all();
-        expect(all).toHaveLength(2);
-        expect(all.map((r) => r.lesson)).toContain("first lesson");
-        expect(all.map((r) => r.lesson)).toContain("second lesson");
-        // ids and timestamps are assigned by the store.
-        expect(all.every((r) => r.id.startsWith("mem_") && r.createdAt > 0)).toBe(true);
-    });
-    it("persists across separate openFleetMemory instances (reads the file)", () => {
-        openFleetMemory(cwd).record({
-            kind: "constraint",
-            weight: "critical",
-            lesson: "keep the cache warm",
-            files: [],
-            outcome: "success",
-        });
-        const reopened = openFleetMemory(cwd);
-        expect(reopened.all().some((r) => r.lesson === "keep the cache warm")).toBe(true);
-    });
-    it("HOME isolation actually points the store under the temp home", () => {
-        expect(homedir()).toBe(home);
-    });
-});
-describe("recall", () => {
-    it("ranks by term overlap and ignores irrelevant lessons", () => {
-        const mem = openFleetMemory(cwd);
-        mem.record({ kind: "bug-root-cause", weight: "low", lesson: "the parser drops the final token", files: ["parser.ts"], outcome: "success" });
-        mem.record({ kind: "routine-change", weight: "low", lesson: "stylesheet needs a vendor prefix", files: ["style.css"], outcome: "success" });
-        const hits = mem.recall("why does the parser lose a token");
-        expect(hits.length).toBeGreaterThanOrEqual(1);
-        expect(hits[0]?.lesson).toContain("parser");
-        expect(hits.some((h) => h.files.includes("style.css"))).toBe(false);
-    });
-    it("weights file overlap above term overlap", () => {
-        const mem = openFleetMemory(cwd);
-        mem.record({ kind: "gotcha", weight: "low", lesson: "unrelated words entirely", files: ["target.ts"], outcome: "success" });
-        mem.record({ kind: "gotcha", weight: "low", lesson: "the target logic is fragile", files: ["other.ts"], outcome: "success" });
-        // Query term "target" hits the second lesson's text, but the file filter
-        // matches the first lesson's file — and file overlap is weighted higher.
-        const hits = mem.recall("target", { files: ["target.ts"] });
-        expect(hits[0]?.files).toEqual(["target.ts"]);
-    });
-    it("returns nothing when there is no overlap", () => {
-        const mem = openFleetMemory(cwd);
-        mem.record({ kind: "gotcha", weight: "low", lesson: "alpha beta gamma", files: [], outcome: "success" });
-        expect(mem.recall("zzz qqq xxx")).toHaveLength(0);
-    });
-    it("tolerates a corrupt line already on disk", () => {
-        const dir = join(home, ".config", "oxagen", "memories");
-        mkdirSync(dir, { recursive: true });
-        const good = {
-            id: "mem_x",
-            createdAt: 1,
-            kind: "gotcha",
-            weight: "high",
-            lesson: "real lesson about widgets",
-            files: [],
-            outcome: "success",
-        };
-        writeFileSync(join(dir, "myproj.jsonl"), `not json\n${JSON.stringify(good)}\n`, "utf8");
-        const mem = openFleetMemory(cwd);
-        expect(mem.recall("widgets")[0]?.lesson).toBe("real lesson about widgets");
-    });
-});
-describe("formatLessons", () => {
-    it("marks weight and lists files", () => {
-        const records = [
-            { id: "1", createdAt: 1, kind: "constraint", weight: "critical", lesson: "A", files: ["x.ts"], outcome: "success" },
-            { id: "2", createdAt: 2, kind: "gotcha", weight: "high", lesson: "B", files: [], outcome: "success" },
-            { id: "3", createdAt: 3, kind: "routine-change", weight: "low", lesson: "C", files: [], outcome: "success" },
-        ];
-        const out = formatLessons(records);
-        expect(out).toContain("‼");
-        expect(out).toContain("!");
-        expect(out).toContain("·");
-        expect(out).toContain("[x.ts]");
-        expect(formatLessons([])).toBe("");
-    });
-});
-//# sourceMappingURL=fleet-memory.test.js.map

package/dist/agent/__tests__/fleet-memory.test.js.map

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package/dist/agent/__tests__/fleet-store.test.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=fleet-store.test.d.ts.map

package/dist/agent/__tests__/fleet-store.test.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"fleet-store.test.d.ts","sourceRoot":"","sources":["../../../src/agent/__tests__/fleet-store.test.ts"],"names":[],"mappings":""}

package/dist/agent/__tests__/fleet-store.test.js

@@ -1,93 +0,0 @@
-/**
- * Plan store — proves plans and their tasks round-trip to disk, that re-saving a
- * plan replaces rather than duplicates it, and that history is bounded. Isolated
- * to a temp $HOME.
- */
-import { describe, it, expect, beforeEach, afterEach } from "vitest";
-import { mkdtempSync, rmSync } from "node:fs";
-import { tmpdir } from "node:os";
-import { join } from "node:path";
-import { openPlanStore } from "../fleet/store.js";
-import { emptyUsage } from "../fleet/types.js";
-let home = "";
-let prevHome = "";
-const cwd = "/work/myproj";
-function task(id, over = {}) {
-    return {
-        id,
-        title: id,
-        description: id,
-        status: "queued",
-        dependsOn: [],
-        files: [],
-        tier: "balanced",
-        model: "anthropic/claude-sonnet-4.6",
-        createdAt: 1,
-        usage: emptyUsage(),
-        ...over,
-    };
-}
-function plan(id, tasks) {
-    return { id, goal: `goal ${id}`, createdAt: 1, tasks, status: "draft" };
-}
-beforeEach(() => {
-    prevHome = process.env["HOME"] ?? "";
-    home = mkdtempSync(join(tmpdir(), "oxagen-store-home-"));
-    process.env["HOME"] = home;
-});
-afterEach(() => {
-    process.env["HOME"] = prevHome;
-    if (home)
-        rmSync(home, { recursive: true, force: true });
-});
-describe("openPlanStore", () => {
-    it("returns empty results before anything is saved", () => {
-        const store = openPlanStore(cwd);
-        expect(store.list()).toEqual([]);
-        expect(store.get("nope")).toBeUndefined();
-    });
-    it("saves and reads a plan back", () => {
-        const store = openPlanStore(cwd);
-        const p = plan("p1", [task("a"), task("b")]);
-        store.save(p);
-        expect(store.get("p1")?.goal).toBe("goal p1");
-        expect(store.list()).toHaveLength(1);
-    });
-    it("replaces a plan on re-save instead of duplicating", () => {
-        const store = openPlanStore(cwd);
-        store.save(plan("p1", [task("a")]));
-        store.save(plan("p1", [task("a"), task("b")]));
-        expect(store.list()).toHaveLength(1);
-        expect(store.get("p1")?.tasks).toHaveLength(2);
-    });
-    it("updates a single task in place", () => {
-        const store = openPlanStore(cwd);
-        store.save(plan("p1", [task("a"), task("b")]));
-        store.updateTask("p1", task("a", { status: "done", summary: "did it" }));
-        const got = store.get("p1");
-        expect(got?.tasks.find((t) => t.id === "a")?.status).toBe("done");
-        expect(got?.tasks.find((t) => t.id === "b")?.status).toBe("queued");
-    });
-    it("sets a plan's lifecycle status", () => {
-        const store = openPlanStore(cwd);
-        store.save(plan("p1", [task("a")]));
-        store.setStatus("p1", "completed");
-        expect(store.get("p1")?.status).toBe("completed");
-    });
-    it("no-ops on updateTask/setStatus for an unknown plan", () => {
-        const store = openPlanStore(cwd);
-        expect(() => store.updateTask("ghost", task("a"))).not.toThrow();
-        expect(() => store.setStatus("ghost", "failed")).not.toThrow();
-    });
-    it("bounds stored history to the 50 most recent plans", () => {
-        const store = openPlanStore(cwd);
-        for (let i = 0; i < 55; i++)
-            store.save(plan(`p${i}`, [task("a")]));
-        const list = store.list();
-        expect(list).toHaveLength(50);
-        // Newest first: p54 present, the earliest plans evicted.
-        expect(list[0]?.id).toBe("p54");
-        expect(list.some((p) => p.id === "p0")).toBe(false);
-    });
-});
-//# sourceMappingURL=fleet-store.test.js.map

package/dist/agent/__tests__/fleet-store.test.js.map

@@ -1 +0,0 @@
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package/dist/agent/__tests__/git-isolation.test.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=git-isolation.test.d.ts.map

package/dist/agent/__tests__/git-isolation.test.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"git-isolation.test.d.ts","sourceRoot":"","sources":["../../../src/agent/__tests__/git-isolation.test.ts"],"names":[],"mappings":""}

package/dist/agent/__tests__/git-isolation.test.js

@@ -1,119 +0,0 @@
-/**
- * Git isolation protocol — proven against a *real* temp git repo, because the
- * whole point is the actual git behavior, not a mock of it. We assert the four
- * guarantees the fleet relies on:
- *
- *   1. No clobber — two agents editing the same file in their own worktrees
- *      never see each other's writes.
- *   2. Atomic + pinned — every checkpoint is one commit, pinned under
- *      `refs/oxagen/agents/*` so it survives branch deletion and gc.
- *   3. Conflicts surface, never corrupt — an overlapping merge is aborted, the
- *      integration tree stays clean, and the losing branch is still recoverable.
- *   4. Durable log — cleanup removes worktrees but keeps the pins.
- */
-import { execFileSync } from "node:child_process";
-import { existsSync, mkdtempSync, rmSync, writeFileSync, readFileSync } from "node:fs";
-import { tmpdir } from "node:os";
-import { join } from "node:path";
-import { afterEach, beforeEach, describe, expect, it } from "vitest";
-import { WorktreeManager } from "../fleet/git-isolation.js";
-function git(cwd, ...args) {
-    return execFileSync("git", args, { cwd, encoding: "utf8" }).trim();
-}
-let repo;
-beforeEach(() => {
-    repo = mkdtempSync(join(tmpdir(), "oxa-iso-"));
-    git(repo, "init", "-b", "main");
-    git(repo, "config", "user.email", "t@oxagen.dev");
-    git(repo, "config", "user.name", "Isolation Test");
-    git(repo, "config", "commit.gpgsign", "false");
-    writeFileSync(join(repo, "base.txt"), "original\n");
-    git(repo, "add", "-A");
-    git(repo, "commit", "-m", "init");
-});
-afterEach(() => {
-    rmSync(repo, { recursive: true, force: true });
-});
-describe("WorktreeManager", () => {
-    it("isolates parallel agents — same-file edits never clobber, both pinned", async () => {
-        const mgr = new WorktreeManager({ repoRoot: repo, namespace: "p1" });
-        const a = await mgr.spawn("task-a");
-        const b = await mgr.spawn("task-b");
-        expect(a).not.toBe(b);
-        // Both agents edit the SAME path — but in their own trees.
-        writeFileSync(join(a, "shared.txt"), "from A\n");
-        writeFileSync(join(b, "shared.txt"), "from B\n");
-        const cpA = await mgr.checkpoint("task-a", "a writes shared");
-        const cpB = await mgr.checkpoint("task-b", "b writes shared");
-        // No clobber: each worktree kept its own content.
-        expect(readFileSync(join(a, "shared.txt"), "utf8")).toBe("from A\n");
-        expect(readFileSync(join(b, "shared.txt"), "utf8")).toBe("from B\n");
-        // Atomic + pinned: one commit each, both reachable under refs/oxagen/agents.
-        expect(cpA?.hash).toMatch(/^[0-9a-f]{40}$/);
-        expect(cpB?.hash).toMatch(/^[0-9a-f]{40}$/);
-        expect(cpA.hash).not.toBe(cpB.hash);
-        const pins = git(repo, "for-each-ref", "--format=%(objectname)", "refs/oxagen/agents");
-        expect(pins).toContain(cpA.hash);
-        expect(pins).toContain(cpB.hash);
-    });
-    it("checkpoint returns null when the agent changed nothing", async () => {
-        const mgr = new WorktreeManager({ repoRoot: repo, namespace: "p2" });
-        await mgr.spawn("noop");
-        expect(await mgr.checkpoint("noop", "nothing")).toBeNull();
-    });
-    it("integrates non-overlapping work cleanly", async () => {
-        const mgr = new WorktreeManager({ repoRoot: repo, namespace: "p3" });
-        const a = await mgr.spawn("a");
-        writeFileSync(join(a, "a.txt"), "a\n");
-        await mgr.checkpoint("a", "add a.txt");
-        const rA = await mgr.integrate("a");
-        expect(rA.ok).toBe(true);
-        const b = await mgr.spawn("b");
-        writeFileSync(join(b, "b.txt"), "b\n");
-        await mgr.checkpoint("b", "add b.txt");
-        const rB = await mgr.integrate("b");
-        expect(rB.ok).toBe(true);
-        // The integration tree has both agents' files.
-        const int = mgr.integrationRef();
-        expect(existsSync(join(int.path, "a.txt"))).toBe(true);
-        expect(existsSync(join(int.path, "b.txt"))).toBe(true);
-    });
-    it("surfaces a conflict, aborts clean, and keeps the losing work recoverable", async () => {
-        const mgr = new WorktreeManager({ repoRoot: repo, namespace: "p4" });
-        // A and B both rewrite base.txt from the same frozen base → real conflict.
-        const a = await mgr.spawn("a");
-        writeFileSync(join(a, "base.txt"), "A version\n");
-        await mgr.checkpoint("a", "a edits base");
-        const rA = await mgr.integrate("a");
-        expect(rA.ok).toBe(true);
-        const intTipAfterA = git(repo, "rev-parse", mgr.integrationRef().branch);
-        const b = await mgr.spawn("b");
-        writeFileSync(join(b, "base.txt"), "B version\n");
-        const cpB = await mgr.checkpoint("b", "b edits base");
-        const rB = await mgr.integrate("b");
-        // Conflict surfaced, not silently merged.
-        expect(rB.ok).toBe(false);
-        expect(rB.conflicts).toContain("base.txt");
-        // Integration tree stayed clean (merge --abort) and branch is unchanged.
-        const int = mgr.integrationRef();
-        expect(git(int.path, "status", "--porcelain")).toBe("");
-        expect(git(repo, "rev-parse", int.branch)).toBe(intTipAfterA);
-        // The losing work is NOT lost — recoverable by its pinned tip.
-        expect(rB.taskTip).toBe(cpB.hash);
-        expect(git(repo, "cat-file", "-t", rB.taskTip)).toBe("commit");
-        expect(git(repo, "show", `${rB.taskTip}:base.txt`)).toBe("B version");
-    });
-    it("cleanupAll removes worktrees but keeps the durability pins", async () => {
-        const mgr = new WorktreeManager({ repoRoot: repo, namespace: "p5" });
-        const a = await mgr.spawn("a");
-        writeFileSync(join(a, "a.txt"), "a\n");
-        const cp = await mgr.checkpoint("a", "add a.txt");
-        await mgr.cleanupAll();
-        expect(existsSync(a)).toBe(false); // worktree gone
-        // Pin survives — the commit is still reachable by hash.
-        const pins = git(repo, "for-each-ref", "--format=%(objectname)", "refs/oxagen/agents");
-        expect(pins).toContain(cp.hash);
-        expect(git(repo, "cat-file", "-t", cp.hash)).toBe("commit");
-    });
-});
-//# sourceMappingURL=git-isolation.test.js.map