@outburn/fume-mapping-provider 0.1.0

package/dist/providers.js

@@ -0,0 +1,475 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.AliasProvider = exports.PackageMappingProvider = exports.UserMappingProvider = void 0;
+const converters_1 = require("./converters");
+/**
+ * Validate that a StructureMap is a FUME mapping
+ * Must have the correct useContext and fume expression extension
+ */
+function isFumeMapping(structureMap) {
+    // Check for fume expression in rule extensions
+    /* istanbul ignore if */
+    if (!structureMap.group || structureMap.group.length === 0) {
+        return false;
+    }
+    for (const group of structureMap.group) {
+        /* istanbul ignore if */
+        if (!group.rule || group.rule.length === 0) {
+            continue;
+        }
+        for (const rule of group.rule) {
+            if (!rule.extension || rule.extension.length === 0) {
+                continue;
+            }
+            const hasFumeExtension = rule.extension.some(
+            // eslint-disable-next-line @typescript-eslint/no-explicit-any
+            (ext) => ext.url === 'http://fhir.fume.health/StructureDefinition/mapping-expression' &&
+                ext.valueExpression?.expression);
+            if (hasFumeExtension) {
+                // Check for appropriate useContext (optional but recommended)
+                /* istanbul ignore if */
+                if (structureMap.useContext && structureMap.useContext.length > 0) {
+                    const hasFumeContext = structureMap.useContext.some(ctx => ctx.valueCodeableConcept?.coding?.some(coding => coding.system?.includes('fume') || coding.code === 'fume'));
+                    return hasFumeContext;
+                }
+                // If no useContext, accept based on extension alone
+                /* istanbul ignore next */
+                return true;
+            }
+        }
+    }
+    return false;
+}
+/**
+ * Provider for user mappings (file + server)
+ * Handles collision resolution: file overrides server
+ */
+class UserMappingProvider {
+    constructor(mappingsFolder, 
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    fhirClient, logger, fileExtension) {
+        this.mappingsFolder = mappingsFolder;
+        this.fhirClient = fhirClient;
+        this.logger = logger;
+        this.fileExtension = fileExtension || '.fume';
+    }
+    /**
+     * Load all user mappings from file and server
+     * File mappings override server mappings on key collision (with warning)
+     */
+    async loadMappings() {
+        const mappings = new Map();
+        // Load from server first
+        if (this.fhirClient) {
+            const serverMappings = await this.loadServerMappings();
+            for (const [key, mapping] of serverMappings) {
+                mappings.set(key, mapping);
+            }
+        }
+        // Load from file (overrides server)
+        if (this.mappingsFolder) {
+            const fileMappings = await this.loadFileMappings();
+            for (const [key, mapping] of fileMappings) {
+                if (mappings.has(key)) {
+                    this.logger?.warn?.(`File mapping '${key}' overrides server mapping with same key`);
+                }
+                mappings.set(key, mapping);
+            }
+        }
+        return mappings;
+    }
+    /**
+     * Refresh a specific user mapping by key
+     * Checks both file and server (file takes precedence)
+     */
+    async refreshMapping(key) {
+        // Check file first
+        if (this.mappingsFolder) {
+            const fileMapping = await this.loadFileMapping(key);
+            if (fileMapping) {
+                return fileMapping;
+            }
+        }
+        // Check server
+        if (this.fhirClient) {
+            const serverMapping = await this.loadServerMapping(key);
+            if (serverMapping) {
+                return serverMapping;
+            }
+        }
+        /* istanbul ignore next */
+        return null;
+    }
+    async loadFileMappings() {
+        const mappings = new Map();
+        /* istanbul ignore if */
+        if (!this.mappingsFolder) {
+            return mappings;
+        }
+        try {
+            const fs = await Promise.resolve().then(() => __importStar(require('fs/promises')));
+            const path = await Promise.resolve().then(() => __importStar(require('path')));
+            const files = await fs.readdir(this.mappingsFolder);
+            const mappingFiles = files.filter(f => f.endsWith(this.fileExtension));
+            for (const file of mappingFiles) {
+                try {
+                    const filePath = path.join(this.mappingsFolder, file);
+                    const expression = await fs.readFile(filePath, 'utf-8');
+                    const key = path.basename(file, this.fileExtension);
+                    mappings.set(key, {
+                        key,
+                        expression,
+                        source: 'file',
+                        filename: file
+                    });
+                }
+                catch (error) {
+                    /* istanbul ignore next */
+                    this.logger?.error?.(`Failed to load mapping from file ${file}:`, error);
+                }
+            }
+        }
+        catch (error) {
+            /* istanbul ignore next */
+            this.logger?.error?.(`Failed to read mappings folder ${this.mappingsFolder}:`, error);
+        }
+        return mappings;
+    }
+    async loadFileMapping(key) {
+        /* istanbul ignore if */
+        if (!this.mappingsFolder) {
+            return null;
+        }
+        try {
+            const fs = await Promise.resolve().then(() => __importStar(require('fs/promises')));
+            const path = await Promise.resolve().then(() => __importStar(require('path')));
+            const filename = `${key}${this.fileExtension}`;
+            const filePath = path.join(this.mappingsFolder, filename);
+            const expression = await fs.readFile(filePath, 'utf-8');
+            return {
+                key,
+                expression,
+                source: 'file',
+                filename
+            };
+        }
+        catch (_error) {
+            /* istanbul ignore next */
+            // File not found
+            return null;
+        }
+    }
+    async loadServerMappings() {
+        const mappings = new Map();
+        /* istanbul ignore if */
+        if (!this.fhirClient) {
+            return mappings;
+        }
+        try {
+            const serverUrl = this.fhirClient.getBaseUrl();
+            this.logger?.debug?.(`Loading mappings from FHIR server ${serverUrl}`);
+            // Search for all StructureMap resources using fetchAll for automatic pagination
+            const resources = await this.fhirClient.search('StructureMap', {}, { fetchAll: true, noCache: true });
+            if (resources && Array.isArray(resources)) {
+                for (const structureMap of resources) {
+                    // Only process FUME mappings
+                    const isFume = isFumeMapping(structureMap);
+                    /* istanbul ignore if */
+                    if (!isFume) {
+                        continue;
+                    }
+                    const expression = (0, converters_1.structureMapToExpression)(structureMap);
+                    if (expression) {
+                        mappings.set(structureMap.id, {
+                            key: structureMap.id,
+                            expression,
+                            source: 'server',
+                            sourceServer: serverUrl,
+                            name: structureMap.name,
+                            url: structureMap.url
+                        });
+                    }
+                }
+            }
+        }
+        catch (error) {
+            /* istanbul ignore next */
+            const serverUrl = this.fhirClient.getBaseUrl();
+            /* istanbul ignore next */
+            this.logger?.error?.(`Failed to load mappings from server ${serverUrl}:`, error);
+        }
+        return mappings;
+    }
+    async loadServerMapping(key) {
+        /* istanbul ignore if */
+        if (!this.fhirClient) {
+            return null;
+        }
+        try {
+            const serverUrl = this.fhirClient.getBaseUrl();
+            const structureMap = await this.fhirClient.read('StructureMap', key, { noCache: true });
+            if (structureMap && isFumeMapping(structureMap)) {
+                const expression = (0, converters_1.structureMapToExpression)(structureMap);
+                if (expression) {
+                    return {
+                        key: structureMap.id,
+                        expression,
+                        source: 'server',
+                        sourceServer: serverUrl,
+                        name: structureMap.name,
+                        url: structureMap.url
+                    };
+                }
+            }
+        }
+        catch (_error) {
+            /* istanbul ignore next */
+            // Resource not found
+        }
+        /* istanbul ignore next */
+        return null;
+    }
+}
+exports.UserMappingProvider = UserMappingProvider;
+/**
+ * Provider for package mappings
+ * No collision handling needed - packages are immutable
+ */
+class PackageMappingProvider {
+    constructor(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    packageExplorer, logger) {
+        this.packageExplorer = packageExplorer;
+        this.logger = logger;
+    }
+    /**
+     * Load all package mappings
+     * Returns array since package mappings don't need key-based lookup
+     */
+    async loadMappings(options) {
+        const mappings = [];
+        try {
+            this.logger?.debug?.('Loading StructureMap resources from package context');
+            // Build filter
+            const filter = { resourceType: 'StructureMap' };
+            if (options?.packageContext) {
+                filter.package = options.packageContext;
+            }
+            // Load all StructureMap resources from the package context
+            const structureMaps = await this.packageExplorer.lookup(filter);
+            for (const structureMap of structureMaps) {
+                // Only process FUME mappings
+                if (!isFumeMapping(structureMap)) {
+                    continue;
+                }
+                const expression = (0, converters_1.structureMapToExpression)(structureMap);
+                if (expression && structureMap.__packageId && structureMap.__packageVersion) {
+                    mappings.push({
+                        id: structureMap.id,
+                        expression,
+                        packageId: structureMap.__packageId,
+                        packageVersion: structureMap.__packageVersion,
+                        filename: structureMap.__filename,
+                        name: structureMap.name,
+                        url: structureMap.url
+                    });
+                }
+            }
+        }
+        catch (error) {
+            /* istanbul ignore next */
+            this.logger?.error?.('Failed to load mappings from packages:', error);
+        }
+        return mappings;
+    }
+    /**
+     * Get a package mapping by identifier (tries url, id, name in order)
+     * Returns first successful resolution
+     */
+    async getMapping(identifier, options) {
+        // Build base filter
+        const baseFilter = { resourceType: 'StructureMap' };
+        if (options?.packageContext) {
+            baseFilter.package = options.packageContext;
+        }
+        // Try URL first (most specific)
+        try {
+            const filter = { ...baseFilter, url: identifier };
+            const structureMap = await this.packageExplorer.resolve(filter);
+            if (structureMap && isFumeMapping(structureMap)) {
+                const expression = (0, converters_1.structureMapToExpression)(structureMap);
+                if (expression && structureMap.__packageId && structureMap.__packageVersion) {
+                    return {
+                        id: structureMap.id,
+                        expression,
+                        packageId: structureMap.__packageId,
+                        packageVersion: structureMap.__packageVersion,
+                        filename: structureMap.__filename,
+                        name: structureMap.name,
+                        url: structureMap.url
+                    };
+                }
+            }
+        }
+        catch (_error) {
+            /* istanbul ignore next */
+            // Not found or duplicate, try next
+        }
+        // Try ID
+        try {
+            const filter = { ...baseFilter, id: identifier };
+            const structureMap = await this.packageExplorer.resolve(filter);
+            if (structureMap && isFumeMapping(structureMap)) {
+                const expression = (0, converters_1.structureMapToExpression)(structureMap);
+                if (expression && structureMap.__packageId && structureMap.__packageVersion) {
+                    return {
+                        id: structureMap.id,
+                        expression,
+                        packageId: structureMap.__packageId,
+                        packageVersion: structureMap.__packageVersion,
+                        filename: structureMap.__filename,
+                        name: structureMap.name,
+                        url: structureMap.url
+                    };
+                }
+            }
+        }
+        catch (_error) {
+            /* istanbul ignore next */
+            // Not found or duplicate, try next
+        }
+        // Try name (least specific)
+        try {
+            const filter = { ...baseFilter, name: identifier };
+            const structureMaps = await this.packageExplorer.lookup(filter);
+            if (structureMaps && structureMaps.length > 0) {
+                const structureMap = structureMaps[0];
+                if (isFumeMapping(structureMap)) {
+                    const expression = (0, converters_1.structureMapToExpression)(structureMap);
+                    if (expression && structureMap.__packageId && structureMap.__packageVersion) {
+                        return {
+                            id: structureMap.id,
+                            expression,
+                            packageId: structureMap.__packageId,
+                            packageVersion: structureMap.__packageVersion,
+                            filename: structureMap.__filename,
+                            name: structureMap.name,
+                            url: structureMap.url
+                        };
+                    }
+                }
+            }
+        }
+        catch (_error) {
+            /* istanbul ignore next */
+            // Not found
+        }
+        return null;
+    }
+}
+exports.PackageMappingProvider = PackageMappingProvider;
+/**
+ * Validate that a ConceptMap is a FUME alias resource
+ * Must have the correct useContext
+ */
+function isFumeAliasResource(conceptMap) {
+    if (!conceptMap.useContext || conceptMap.useContext.length === 0) {
+        return false;
+    }
+    return conceptMap.useContext.some(ctx => ctx.code?.system === 'http://snomed.info/sct' &&
+        ctx.code?.code === '706594005' &&
+        ctx.valueCodeableConcept?.coding?.some(coding => coding.system === 'http://codes.fume.health' && coding.code === 'fume'));
+}
+/**
+ * Provider for aliases (server only)
+ * Handles loading and transforming FUME alias ConceptMap resources
+ */
+class AliasProvider {
+    constructor(
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    fhirClient, logger) {
+        this.fhirClient = fhirClient;
+        this.logger = logger;
+    }
+    /**
+     * Load aliases from FHIR server
+     * @returns AliasObject with all aliases, or empty object if none found
+     */
+    async loadAliases() {
+        /* istanbul ignore if */
+        if (!this.fhirClient) {
+            return {};
+        }
+        try {
+            const serverUrl = this.fhirClient.getBaseUrl();
+            this.logger?.debug?.(`Loading aliases from FHIR server ${serverUrl}`);
+            // Search for ConceptMap with name=FumeAliases and context parameter
+            const searchParams = {
+                name: 'FumeAliases',
+                context: 'http://codes.fume.health|fume'
+            };
+            const resources = await this.fhirClient.search('ConceptMap', searchParams, { fetchAll: true, noCache: true });
+            if (!resources || !Array.isArray(resources) || resources.length === 0) {
+                this.logger?.debug?.('No alias ConceptMap found on server');
+                return {};
+            }
+            // Filter client-side in case server ignores context parameter
+            const aliasResources = resources.filter((cm) => isFumeAliasResource(cm));
+            if (aliasResources.length === 0) {
+                this.logger?.debug?.('No alias ConceptMap with correct useContext found');
+                return {};
+            }
+            if (aliasResources.length > 1) {
+                this.logger?.error?.(`Found ${aliasResources.length} alias ConceptMaps - expected exactly 1. Skipping alias loading.`);
+                return {};
+            }
+            const conceptMap = aliasResources[0];
+            const aliases = (0, converters_1.conceptMapToAliasObject)(conceptMap, this.logger);
+            this.logger?.info?.(`Loaded ${Object.keys(aliases).length} alias(es) from server`);
+            return aliases;
+        }
+        catch (error) {
+            /* istanbul ignore next */
+            const serverUrl = this.fhirClient.getBaseUrl();
+            /* istanbul ignore next */
+            this.logger?.error?.(`Failed to load aliases from server ${serverUrl}:`, error);
+            /* istanbul ignore next */
+            return {};
+        }
+    }
+}
+exports.AliasProvider = AliasProvider;
+//# sourceMappingURL=providers.js.map

package/dist/providers.js.map

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package/dist/types.d.ts

@@ -0,0 +1,191 @@
+import { FhirClient } from '@outburn/fhir-client';
+import type { FhirPackageIdentifier, Logger, Resource } from '@outburn/types';
+import { FhirPackageExplorer } from 'fhir-package-explorer';
+/**
+ * Extended Resource type with FPE enrichment properties
+ */
+export interface EnrichedResource extends Resource {
+    /** Package ID enriched by fhir-package-explorer */
+    __packageId?: string;
+    /** Package version enriched by fhir-package-explorer */
+    __packageVersion?: string;
+    /** Filename enriched by fhir-package-explorer */
+    __filename?: string;
+}
+/**
+ * User mapping metadata (from file or server)
+ */
+export interface UserMappingMetadata {
+    /** Unique key (ID) for the mapping */
+    key: string;
+    /** Source: 'file' or 'server' */
+    source: 'file' | 'server';
+    /** Filename (for file sources) */
+    filename?: string;
+    /** Source FHIR server URL (for server sources) */
+    sourceServer?: string;
+    /** StructureMap resource name (if applicable) */
+    name?: string;
+    /** StructureMap canonical URL (if applicable) */
+    url?: string;
+}
+/**
+ * A complete user mapping with expression and metadata
+ */
+export interface UserMapping extends UserMappingMetadata {
+    /** The FUME expression */
+    expression: string;
+}
+/**
+ * Package mapping metadata
+ */
+export interface PackageMappingMetadata {
+    /** Resource ID */
+    id: string;
+    /** Package ID */
+    packageId: string;
+    /** Package version */
+    packageVersion: string;
+    /** Filename in package */
+    filename: string;
+    /** StructureMap resource name (if applicable) */
+    name?: string;
+    /** StructureMap canonical URL (if applicable) */
+    url?: string;
+}
+/**
+ * A complete package mapping with expression and metadata
+ */
+export interface PackageMapping extends PackageMappingMetadata {
+    /** The FUME expression */
+    expression: string;
+}
+/**
+ * FHIR StructureMap resource (simplified)
+ * Extended with FPE enrichment properties
+ */
+export interface StructureMap extends EnrichedResource {
+    resourceType: 'StructureMap';
+    id: string;
+    url?: string;
+    identifier?: Array<{
+        use?: string;
+        type?: {
+            text?: string;
+        };
+        system?: string;
+        value?: string;
+    }>;
+    name?: string;
+    title?: string;
+    status?: string;
+    date?: string;
+    useContext?: Array<{
+        code?: {
+            system?: string;
+            code?: string;
+            display?: string;
+        };
+        valueCodeableConcept?: {
+            coding?: Array<{
+                system?: string;
+                code?: string;
+                display?: string;
+            }>;
+            text?: string;
+        };
+    }>;
+    group?: Array<{
+        name?: string;
+        typeMode?: string;
+        input?: Array<{
+            name?: string;
+            mode?: string;
+        }>;
+        rule?: Array<{
+            extension?: Array<{
+                url?: string;
+                valueExpression?: {
+                    language?: string;
+                    expression?: string;
+                };
+            }>;
+            name?: string;
+            source?: Array<{
+                context?: string;
+            }>;
+        }>;
+    }>;
+}
+/**
+ * Configuration options for FumeMappingProvider
+ */
+export interface FumeMappingProviderConfig {
+    /** Path to folder containing mapping files */
+    mappingsFolder?: string;
+    /** File extension for mapping files (default: '.fume') */
+    fileExtension?: string;
+    /** Injected FHIR package explorer instance */
+    packageExplorer?: FhirPackageExplorer;
+    /** Injected FHIR client instance */
+    fhirClient?: FhirClient;
+    /** Optional logger instance for structured logging */
+    logger?: Logger;
+    /** Canonical base URL for generated FHIR resources (default: 'http://example.com') */
+    canonicalBaseUrl?: string;
+}
+/**
+ * Options for getting package mappings
+ */
+export interface GetPackageMappingOptions {
+    /** Filter by package context - supports string or FhirPackageIdentifier */
+    packageContext?: string | FhirPackageIdentifier;
+}
+/**
+ * Alias object - key-value mappings
+ */
+export interface AliasObject {
+    [key: string]: string;
+}
+/**
+ * FHIR ConceptMap resource (simplified)
+ */
+export interface ConceptMap extends Resource {
+    resourceType: 'ConceptMap';
+    id?: string;
+    url?: string;
+    name?: string;
+    status?: string;
+    publisher?: string;
+    description?: string;
+    date?: string;
+    useContext?: Array<{
+        code?: {
+            system?: string;
+            code?: string;
+            display?: string;
+        };
+        valueCodeableConcept?: {
+            coding?: Array<{
+                system?: string;
+                code?: string;
+                display?: string;
+            }>;
+            text?: string;
+        };
+    }>;
+    group?: Array<{
+        source?: string;
+        target?: string;
+        element?: Array<{
+            code?: string;
+            display?: string;
+            target?: Array<{
+                code?: string;
+                display?: string;
+                equivalence?: string;
+            }>;
+        }>;
+    }>;
+}
+//# sourceMappingURL=types.d.ts.map