@ottolab/shared 0.1.0 → 0.1.1

package/dist/types/messaging.d.ts.map

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package/dist/types/messaging.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=messaging.js.map

package/dist/types/messaging.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"messaging.js","sourceRoot":"","sources":["../../src/types/messaging.ts"],"names":[],"mappings":""}

package/dist/types/recommendation.d.ts

@@ -0,0 +1,33 @@
+export type ProtocolCategory = 'medication' | 'supplement' | 'diet' | 'exercise' | 'lifestyle' | 'monitoring';
+export type EvidenceLevel = 'A' | 'B' | 'C' | 'D' | 'expert_opinion';
+export interface Protocol {
+    id: string;
+    name: string;
+    category: ProtocolCategory;
+    description: string;
+    dosage?: string;
+    frequency?: string;
+    duration?: string;
+    evidenceLevel: EvidenceLevel;
+    guidelineSource: string;
+    targetBiomarkers: string[];
+}
+export interface EvidenceReference {
+    pmid?: string;
+    doi?: string;
+    title: string;
+    authors: string;
+    journal: string;
+    year: number;
+    summary: string;
+}
+export interface Recommendation {
+    id: string;
+    labReportId: string;
+    userId: string;
+    protocols: Protocol[];
+    simulationSummary: Record<string, unknown> | null;
+    evidenceRefs: EvidenceReference[];
+    createdAt: Date;
+}
+//# sourceMappingURL=recommendation.d.ts.map

package/dist/types/recommendation.d.ts.map

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package/dist/types/recommendation.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=recommendation.js.map

package/dist/types/recommendation.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"recommendation.js","sourceRoot":"","sources":["../../src/types/recommendation.ts"],"names":[],"mappings":""}

package/dist/types/simulation.d.ts

@@ -0,0 +1,49 @@
+import type { BiomarkerSet } from './biomarkers.js';
+export interface SimulationInput {
+    biomarkers: BiomarkerSet;
+    protocols: string[];
+    durationDays?: number;
+    gender?: 'm' | 'f';
+    age?: number;
+}
+export interface DailySnapshot {
+    day: number;
+    weight?: number;
+    fatMass?: number;
+    leanMass?: number;
+    ldlC?: number;
+    hdl?: number;
+    triglycerides?: number;
+    apoB?: number;
+    hba1c?: number;
+    fastingGlucose?: number;
+    fastingInsulin?: number;
+    homaIr?: number;
+    hsCrp?: number;
+    testosterone?: number;
+    cortisol?: number;
+    uricAcid?: number;
+}
+export interface ModuleSummary {
+    [key: string]: number | string | boolean | null | undefined;
+}
+export interface ModuleResult {
+    id: string;
+    name: string;
+    summary: ModuleSummary;
+    finalValues: Record<string, number>;
+}
+export interface BiomarkerDelta {
+    start: number;
+    end: number;
+    change: number;
+    changePercent: number;
+}
+export interface SimulationResult {
+    timeline: DailySnapshot[];
+    moduleResults: ModuleResult[];
+    biomarkerDeltas: Record<string, BiomarkerDelta>;
+    durationDays: number;
+    activeModules: string[];
+}
+//# sourceMappingURL=simulation.d.ts.map

package/dist/types/simulation.d.ts.map

@@ -0,0 +1 @@
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package/dist/types/simulation.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=simulation.js.map

package/dist/types/simulation.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"simulation.js","sourceRoot":"","sources":["../../src/types/simulation.ts"],"names":[],"mappings":""}

package/dist/types/user.d.ts

@@ -0,0 +1,21 @@
+export type UserStatus = 'active' | 'suspended' | 'deleted';
+export type Channel = 'whatsapp' | 'telegram' | 'line' | 'sms' | 'app';
+export interface User {
+    id: string;
+    createdAt: Date;
+    updatedAt: Date;
+    status: UserStatus;
+    displayName: string | null;
+    timezone: string;
+    onboardedAt: Date | null;
+}
+export interface ChannelIdentity {
+    id: string;
+    userId: string;
+    channel: Channel;
+    channelUserId: string;
+    isPrimary: boolean;
+    linkedAt: Date;
+    metadata: Record<string, unknown>;
+}
+//# sourceMappingURL=user.d.ts.map

package/dist/types/user.d.ts.map

@@ -0,0 +1 @@
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package/dist/types/user.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=user.js.map

package/dist/types/user.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"user.js","sourceRoot":"","sources":["../../src/types/user.ts"],"names":[],"mappings":""}

package/package.json

@@ -1,10 +1,15 @@
 {
   "name": "@ottolab/shared",
-  "version": "0.1.0",
+  "version": "0.1.1",
   "license": "MIT",
   "repository": "https://github.com/hokev/Otto",
-  "publishConfig": { "access": "public" },
+  "publishConfig": {
+    "access": "public"
+  },
   "type": "module",
+  "files": [
+    "dist"
+  ],
   "exports": {
     ".": {
       "import": {
@@ -16,6 +21,7 @@
   },
   "scripts": {
     "build": "tsc --build",
+    "prepublishOnly": "npm run build",
     "lint": "eslint src/",
     "test": "echo 'No tests yet'"
   }

package/src/constants/biomarker-ranges.ts

@@ -1,330 +0,0 @@
-export interface BiomarkerRange {
-  low: number;
-  high: number;
-  unit: string;
-  criticalLow?: number;
-  criticalHigh?: number;
-  optimalLow?: number;
-  optimalHigh?: number;
-  lowerIsBetter?: boolean;
-  bidirectional?: boolean;
-}
-
-/**
- * Clinical reference ranges for all target biomarkers.
- * Sources: AHA/ACC, ADA, AACE, KDIGO guidelines + prototype report thresholds.
- *
- * Convention: "low"/"high" = normal range. "optimalLow"/"optimalHigh" = tighter optimal range.
- * "criticalLow"/"criticalHigh" = red-flag values requiring immediate attention.
- */
-export const BIOMARKER_RANGES: Record<string, BiomarkerRange> = {
-  // ── Lipids (mg/dL) ───────────────────────────────────────
-  total_cholesterol: {
-    low: 125,
-    high: 200,
-    unit: 'mg/dL',
-    optimalHigh: 200,
-    criticalHigh: 240,
-    lowerIsBetter: true,
-  },
-  ldl_c: {
-    low: 0,
-    high: 100,
-    unit: 'mg/dL',
-    optimalHigh: 100,
-    criticalHigh: 160,
-    lowerIsBetter: true,
-  },
-  hdl: {
-    low: 40,
-    high: 100,
-    unit: 'mg/dL',
-    optimalLow: 60,
-    criticalLow: 40,
-  },
-  triglycerides: {
-    low: 0,
-    high: 150,
-    unit: 'mg/dL',
-    optimalHigh: 100,
-    criticalHigh: 500,
-    lowerIsBetter: true,
-  },
-  apoB: {
-    low: 0,
-    high: 90,
-    unit: 'mg/dL',
-    optimalHigh: 80,
-    criticalHigh: 120,
-    lowerIsBetter: true,
-  },
-
-  // ── Metabolic ─────────────────────────────────────────────
-  hba1c: {
-    low: 4.0,
-    high: 5.7,
-    unit: '%',
-    optimalHigh: 5.4,
-    criticalHigh: 6.5,
-    lowerIsBetter: true,
-  },
-  fasting_glucose: {
-    low: 65,
-    high: 100,
-    unit: 'mg/dL',
-    optimalLow: 65,
-    optimalHigh: 90,
-    criticalHigh: 126,
-    lowerIsBetter: true,
-  },
-  fasting_insulin: {
-    low: 2,
-    high: 25,
-    unit: 'uIU/mL',
-    optimalHigh: 6,
-    criticalHigh: 25,
-    lowerIsBetter: true,
-  },
-  homa_ir: {
-    low: 0,
-    high: 1.0,
-    unit: '',
-    criticalHigh: 2.5,
-    lowerIsBetter: true,
-  },
-  uric_acid: {
-    low: 2.5,
-    high: 7.0,
-    unit: 'mg/dL',
-    optimalHigh: 5.0,
-    criticalHigh: 9.0,
-    lowerIsBetter: true,
-  },
-
-  // ── Kidney ────────────────────────────────────────────────
-  creatinine: {
-    low: 0.5,
-    high: 1.1,
-    unit: 'mg/dL',
-    criticalHigh: 1.3,
-    lowerIsBetter: true,
-  },
-  bun: {
-    low: 7,
-    high: 20,
-    unit: 'mg/dL',
-    criticalHigh: 30,
-    lowerIsBetter: true,
-  },
-  egfr: {
-    low: 90,
-    high: 120,
-    unit: 'mL/min/1.73m2',
-    criticalLow: 60,
-  },
-
-  // ── Liver ─────────────────────────────────────────────────
-  alt: {
-    low: 7,
-    high: 35,
-    unit: 'U/L',
-    optimalHigh: 30,
-    criticalHigh: 50,
-    lowerIsBetter: true,
-  },
-  ast: {
-    low: 10,
-    high: 35,
-    unit: 'U/L',
-    optimalHigh: 30,
-    criticalHigh: 50,
-    lowerIsBetter: true,
-  },
-  alp: {
-    low: 44,
-    high: 147,
-    unit: 'U/L',
-    criticalHigh: 200,
-  },
-  ggt: {
-    low: 9,
-    high: 48,
-    unit: 'U/L',
-    criticalHigh: 80,
-    lowerIsBetter: true,
-  },
-  bilirubin_total: {
-    low: 0.1,
-    high: 1.2,
-    unit: 'mg/dL',
-    criticalHigh: 2.0,
-  },
-  albumin: {
-    low: 3.5,
-    high: 5.5,
-    unit: 'g/dL',
-    criticalLow: 3.0,
-  },
-
-  // ── Inflammatory ──────────────────────────────────────────
-  hs_crp: {
-    low: 0,
-    high: 1.0,
-    unit: 'mg/L',
-    optimalHigh: 1.0,
-    criticalHigh: 3.0,
-    lowerIsBetter: true,
-  },
-  esr: {
-    low: 0,
-    high: 20,
-    unit: 'mm/hr',
-    criticalHigh: 40,
-    lowerIsBetter: true,
-  },
-
-  // ── Hormones ──────────────────────────────────────────────
-  cortisol: {
-    low: 6,
-    high: 18,
-    unit: 'ug/dL',
-    criticalHigh: 23,
-    lowerIsBetter: true,
-  },
-  testosterone: {
-    low: 300,
-    high: 1000,
-    unit: 'ng/dL',
-    optimalLow: 500,
-    criticalLow: 300,
-  },
-  estradiol: {
-    low: 15,
-    high: 350,
-    unit: 'pg/mL',
-    bidirectional: true,
-  },
-  tsh: {
-    low: 0.5,
-    high: 4.5,
-    unit: 'mIU/L',
-    optimalLow: 0.5,
-    optimalHigh: 2.5,
-    criticalLow: 0.3,
-    criticalHigh: 10,
-    bidirectional: true,
-  },
-
-  // ── Hematology ────────────────────────────────────────────
-  wbc: {
-    low: 4.5,
-    high: 11.0,
-    unit: '10^3/uL',
-    criticalLow: 3.0,
-    criticalHigh: 15.0,
-    bidirectional: true,
-  },
-  rbc: {
-    low: 4.0,
-    high: 5.5,
-    unit: '10^6/uL',
-    criticalLow: 3.5,
-    criticalHigh: 6.0,
-    bidirectional: true,
-  },
-  hemoglobin: {
-    low: 12.0,
-    high: 17.5,
-    unit: 'g/dL',
-    criticalLow: 10.0,
-    bidirectional: true,
-  },
-  hematocrit: {
-    low: 36,
-    high: 52,
-    unit: '%',
-    criticalLow: 30,
-    bidirectional: true,
-  },
-  platelets: {
-    low: 150,
-    high: 400,
-    unit: '10^3/uL',
-    criticalLow: 100,
-    criticalHigh: 500,
-    bidirectional: true,
-  },
-  mcv: {
-    low: 80,
-    high: 100,
-    unit: 'fL',
-    criticalLow: 70,
-    criticalHigh: 110,
-    bidirectional: true,
-  },
-  rdw: {
-    low: 11.5,
-    high: 14.5,
-    unit: '%',
-    criticalHigh: 17.0,
-    lowerIsBetter: true,
-  },
-  lymphocyte_percent: {
-    low: 20,
-    high: 40,
-    unit: '%',
-    criticalLow: 15,
-    criticalHigh: 50,
-    bidirectional: true,
-  },
-
-  // ── Vitamins ──────────────────────────────────────────────
-  vitamin_d: {
-    low: 30,
-    high: 100,
-    unit: 'ng/mL',
-    optimalLow: 40,
-    optimalHigh: 80,
-    criticalLow: 20,
-  },
-
-  // ── Vitals ────────────────────────────────────────────────
-  weight: { low: 40, high: 150, unit: 'kg' },
-  height: { low: 140, high: 210, unit: 'cm' },
-  bmi: {
-    low: 18.5,
-    high: 24.9,
-    unit: 'kg/m2',
-    criticalHigh: 30,
-    lowerIsBetter: true,
-  },
-  body_fat_percent: {
-    low: 8,
-    high: 25,
-    unit: '%',
-    criticalHigh: 35,
-    lowerIsBetter: true,
-  },
-  systolic_bp: {
-    low: 90,
-    high: 120,
-    unit: 'mmHg',
-    criticalHigh: 140,
-    lowerIsBetter: true,
-  },
-  diastolic_bp: {
-    low: 60,
-    high: 80,
-    unit: 'mmHg',
-    criticalHigh: 90,
-    lowerIsBetter: true,
-  },
-  heart_rate: {
-    low: 50,
-    high: 100,
-    unit: 'bpm',
-    optimalLow: 50,
-    optimalHigh: 70,
-    bidirectional: true,
-  },
-};

package/src/constants/drug-data.ts

@@ -1,2 +0,0 @@
-// Drug interaction and protocol data — populated in Phase 5
-export const DRUG_DATA: Record<string, { name: string; category: string }> = {};

package/src/constants/unit-conversions.ts

@@ -1,17 +0,0 @@
-export const UNIT_CONVERSIONS: Record<
-  string,
-  { fromUnit: string; toUnit: string; factor: number }
-> = {
-  total_cholesterol: { fromUnit: 'mmol/L', toUnit: 'mg/dL', factor: 38.67 },
-  ldl_c: { fromUnit: 'mmol/L', toUnit: 'mg/dL', factor: 38.67 },
-  hdl: { fromUnit: 'mmol/L', toUnit: 'mg/dL', factor: 38.67 },
-  triglycerides: { fromUnit: 'mmol/L', toUnit: 'mg/dL', factor: 88.57 },
-  fasting_glucose: { fromUnit: 'mmol/L', toUnit: 'mg/dL', factor: 18.016 },
-  creatinine: { fromUnit: 'umol/L', toUnit: 'mg/dL', factor: 1 / 88.401 },
-  uric_acid: { fromUnit: 'umol/L', toUnit: 'mg/dL', factor: 1 / 59.48 },
-  albumin: { fromUnit: 'g/L', toUnit: 'g/dL', factor: 0.1 },
-  hs_crp: { fromUnit: 'mg/dL', toUnit: 'mg/L', factor: 10 },
-  bilirubin_total: { fromUnit: 'umol/L', toUnit: 'mg/dL', factor: 1 / 17.1 },
-  bun: { fromUnit: 'mmol/L', toUnit: 'mg/dL', factor: 2.801 },
-  vitamin_d: { fromUnit: 'nmol/L', toUnit: 'ng/mL', factor: 1 / 2.496 },
-};

package/src/index.ts

@@ -1,52 +0,0 @@
-// Types
-export type { User, UserStatus, Channel, ChannelIdentity } from './types/user.js';
-export type { BiomarkerValue, BiomarkerSet } from './types/biomarkers.js';
-export type {
-  SourceLab,
-  ExtractionResult,
-  BioAgeResult,
-  ReportCard,
-  ReportHighlight,
-  FlaggedBiomarker,
-  LabReport,
-} from './types/lab-report.js';
-export type {
-  ProtocolCategory,
-  EvidenceLevel,
-  Protocol,
-  EvidenceReference,
-  Recommendation,
-} from './types/recommendation.js';
-export type {
-  SimulationInput,
-  DailySnapshot,
-  ModuleSummary,
-  ModuleResult,
-  BiomarkerDelta,
-  SimulationResult,
-} from './types/simulation.js';
-export type {
-  MessageRole,
-  ConversationStatus,
-  InboundMessage,
-  OutboundMessage,
-  Conversation,
-  Message,
-} from './types/messaging.js';
-export type {
-  ChatMessage,
-  ContentPart,
-  LLMOptions,
-  LLMProvider,
-  DocumentPart,
-  ImagePart,
-  TextPart,
-  MultimodalPart,
-  ExtendedLLMProvider,
-} from './types/llm.js';
-
-// Constants
-export { UNIT_CONVERSIONS } from './constants/unit-conversions.js';
-export { BIOMARKER_RANGES } from './constants/biomarker-ranges.js';
-export type { BiomarkerRange } from './constants/biomarker-ranges.js';
-export { DRUG_DATA } from './constants/drug-data.js';

package/src/types/biomarkers.ts

@@ -1,68 +0,0 @@
-export interface BiomarkerValue {
-  name: string;
-  value: number;
-  unit: string;
-  referenceRange?: { low: number; high: number };
-  flag?: 'low' | 'normal' | 'high' | 'critical';
-}
-
-export interface BiomarkerSet {
-  // Vitals
-  weight?: BiomarkerValue;
-  height?: BiomarkerValue;
-  bmi?: BiomarkerValue;
-  bodyFatPercent?: BiomarkerValue;
-  bloodPressureSystolic?: BiomarkerValue;
-  bloodPressureDiastolic?: BiomarkerValue;
-  heartRate?: BiomarkerValue;
-
-  // Lipids
-  totalCholesterol?: BiomarkerValue;
-  ldlC?: BiomarkerValue;
-  hdl?: BiomarkerValue;
-  triglycerides?: BiomarkerValue;
-  apoB?: BiomarkerValue;
-
-  // Metabolic
-  hba1c?: BiomarkerValue;
-  fastingGlucose?: BiomarkerValue;
-  fastingInsulin?: BiomarkerValue;
-  homaIr?: BiomarkerValue;
-  uricAcid?: BiomarkerValue;
-
-  // Kidney
-  creatinine?: BiomarkerValue;
-  bun?: BiomarkerValue;
-  egfr?: BiomarkerValue;
-
-  // Liver
-  alt?: BiomarkerValue;
-  ast?: BiomarkerValue;
-  alp?: BiomarkerValue;
-  ggt?: BiomarkerValue;
-  bilirubinTotal?: BiomarkerValue;
-  albumin?: BiomarkerValue;
-
-  // Inflammatory
-  hsCrp?: BiomarkerValue;
-  esr?: BiomarkerValue;
-
-  // Hormones
-  cortisol?: BiomarkerValue;
-  testosterone?: BiomarkerValue;
-  estradiol?: BiomarkerValue;
-  tsh?: BiomarkerValue;
-
-  // Hematology
-  wbc?: BiomarkerValue;
-  rbc?: BiomarkerValue;
-  hemoglobin?: BiomarkerValue;
-  hematocrit?: BiomarkerValue;
-  platelets?: BiomarkerValue;
-  mcv?: BiomarkerValue;
-  rdw?: BiomarkerValue;
-  lymphocytePercent?: BiomarkerValue;
-
-  // Vitamins
-  vitaminD?: BiomarkerValue;
-}