@ornexus/neocortex 3.9.14 → 3.9.16

package/install.ps1

@@ -15,7 +15,7 @@ param(
     [string]$ServerUrl = "https://api.neocortex.ornexus.com"
 )
 
-$VERSION = "3.9.14"
+$VERSION = "3.9.16"
 
 # =============================================================================
 # CONFIGURACOES

package/install.sh

@@ -4,7 +4,7 @@
 # Development Orchestrator
 
 # Versao do instalador
-VERSION="3.9.14"
+VERSION="3.9.16"
 
 # Flags
 MIGRATION_DETECTED=false
@@ -204,7 +204,9 @@ copy_dir() {
 
 # Patch description tier in any agent file (YAML frontmatter or Markdown H1)
 # Usage: patch_description_tier <file>
-# Reads tier from ~/.neocortex/config.json and replaces (Free) with actual tier
+# Reads tier from ~/.neocortex/config.json and replaces ANY tier label with actual tier.
+# Supports: (Free) <-> (Pro) <-> (Enterprise) in any direction.
+# Works on both frontmatter description and banner body lines.
 patch_description_tier() {
     local target_file="$1"
     local config_file="${HOME}/.neocortex/config.json"
@@ -218,22 +220,29 @@ patch_description_tier() {
 
     local tier_label
     case "$tier" in
+        free)       tier_label="Free" ;;
         pro)        tier_label="Pro" ;;
         enterprise) tier_label="Enterprise" ;;
-        *)          return 0 ;; # Already Free, no patch needed
+        *)          return 0 ;;
     esac
 
-    # Replace (Free) with actual tier in non-banner lines (description, title, body text).
-    # These lines have no fixed-width alignment constraints.
-    sed -i.bak -e "s/(Free)/(${tier_label})/g" "$target_file" 2>/dev/null
+    # Replace ANY tier label with the correct one in non-banner lines
+    # (frontmatter description, body text, H1 headers, etc.)
+    # Each sed expression replaces one possible source tier with the target tier.
+    # If source == target, sed is a no-op (replaces X with X). This is correct.
+    sed -i.bak \
+        -e "s/(Free)/(${tier_label})/g" \
+        -e "s/(Pro)/(${tier_label})/g" \
+        -e "s/(Enterprise)/(${tier_label})/g" \
+        "$target_file" 2>/dev/null
     rm -f "${target_file}.bak" 2>/dev/null
 
     # Fix banner alignment: the OrNexus Team line has a fixed 62-char frame.
-    # After replacing (Free) with a different-length tier, re-pad to maintain alignment.
+    # After replacing tier labels of different lengths, re-pad to maintain alignment.
     # Pattern: "│ ##   ###  ######  ##    OrNexus Team (Tier)<spaces>│"
     # Inner width must be exactly 60 chars (│ + 60 + │ = 62).
     if grep -q "OrNexus Team (${tier_label})" "$target_file" 2>/dev/null; then
-        local prefix="│ ##   ###  ######  ##    "  # 25 chars
+        local prefix="│ ##   ###  ######  ##    "  # 25 chars inner prefix
         local content="OrNexus Team (${tier_label})"
         local content_len=${#content}
         local pad_len=$((60 - 25 - content_len))
@@ -241,12 +250,12 @@ patch_description_tier() {
         local i
         for ((i=0; i<pad_len; i++)); do padding="${padding} "; done
         local new_line="${prefix}${content}${padding}│"
-        # Replace the misaligned banner line with the correctly padded one
+        # Replace the (possibly misaligned) banner line with the correctly padded one
         sed -i.bak -e "s|│ ##   ###  ######  ##    OrNexus Team ([^)]*).*│|${new_line}|" "$target_file" 2>/dev/null
         rm -f "${target_file}.bak" 2>/dev/null
     fi
 
-    debug "Tier patched: (Free) -> (${tier_label}) in $(basename "$target_file")"
+    debug "Tier patched to (${tier_label}) in $(basename "$target_file")"
 }
 
 # =============================================================================

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@ornexus/neocortex",
-  "version": "3.9.14",
-  "description": "Neocortex v3.9.14 - Orquestrador de Desenvolvimento de Epics & Stories para Claude Code",
+  "version": "3.9.16",
+  "description": "Neocortex v3.9.16 - Orquestrador de Desenvolvimento de Epics & Stories para Claude Code",
   "keywords": [
     "claude",
     "claude-code",

package/packages/client/dist/agent/refresh-stubs.d.ts

@@ -0,0 +1,34 @@
+/**
+ * @license FSL-1.1
+ * Copyright (c) 2026 OrNexus AI
+ *
+ * This file is part of Neocortex CLI, licensed under the
+ * Functional Source License, Version 1.1 (FSL-1.1).
+ *
+ * Change Date: February 20, 2029
+ * Change License: MIT
+ *
+ * See the LICENSE file in the project root for full license text.
+ */
+/**
+ * Find the monorepo / npm package root by walking up from this file's location.
+ * Looks for a package.json with name '@ornexus/neocortex' (monorepo root) or
+ * '@neocortex/client' (client package root that contains targets-stubs after build).
+ *
+ * Returns null if not found within 10 levels.
+ */
+export declare function findPackageRoot(): string | null;
+/**
+ * Refresh installed stubs if CLI version differs from installed version.
+ *
+ * For each stub target:
+ *   1. Read .version from install dir
+ *   2. Compare with cliVersion
+ *   3. If different (or .version missing): re-copy all stub files + write .version
+ *   4. If same: skip (no-op)
+ *
+ * Never throws -- stub refresh is non-critical.
+ * Returns the number of targets that were refreshed.
+ */
+export declare function refreshStubs(cliVersion: string): number;
+//# sourceMappingURL=refresh-stubs.d.ts.map

package/packages/client/dist/agent/refresh-stubs.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"refresh-stubs.d.ts","sourceRoot":"","sources":["../../src/agent/refresh-stubs.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAgDH;;;;;;GAMG;AACH,wBAAgB,eAAe,IAAI,MAAM,GAAG,IAAI,CAe/C;AAoBD;;;;;;;;;;;GAWG;AACH,wBAAgB,YAAY,CAAC,UAAU,EAAE,MAAM,GAAG,MAAM,CA4DvD"}

package/packages/client/dist/agent/refresh-stubs.js

@@ -0,0 +1,152 @@
+/**
+ * @license FSL-1.1
+ * Copyright (c) 2026 OrNexus AI
+ *
+ * This file is part of Neocortex CLI, licensed under the
+ * Functional Source License, Version 1.1 (FSL-1.1).
+ *
+ * Change Date: February 20, 2029
+ * Change License: MIT
+ *
+ * See the LICENSE file in the project root for full license text.
+ */
+/**
+ * @neocortex/client - Stub Refresh Module
+ *
+ * Detects version mismatch between installed stubs and CLI version.
+ * Re-copies full stub files from the package when outdated.
+ *
+ * Called by activate.ts BEFORE updateAgentDescription() to ensure
+ * the stub file has all current sections (Banner, Plugin Guard, etc.)
+ * before the regex patcher runs.
+ *
+ * Never throws -- stub refresh is non-critical.
+ *
+ * Story 55.1
+ */
+import { readFileSync, writeFileSync, copyFileSync, existsSync, mkdirSync } from 'node:fs';
+import { join, dirname } from 'node:path';
+import { homedir } from 'node:os';
+import { fileURLToPath } from 'node:url';
+const STUB_TARGETS = [
+    {
+        destDir: join(homedir(), '.claude', 'agents', 'neocortex'),
+        sourceDir: 'claude-code',
+        files: ['neocortex.md', 'neocortex.agent.yaml'],
+    },
+    {
+        destDir: join(homedir(), '.gemini', 'agents'),
+        sourceDir: 'gemini-cli',
+        files: ['agent.md'],
+    },
+];
+// -- Package Root Resolution --------------------------------------------------
+/**
+ * Find the monorepo / npm package root by walking up from this file's location.
+ * Looks for a package.json with name '@ornexus/neocortex' (monorepo root) or
+ * '@neocortex/client' (client package root that contains targets-stubs after build).
+ *
+ * Returns null if not found within 10 levels.
+ */
+export function findPackageRoot() {
+    try {
+        const thisFile = fileURLToPath(import.meta.url);
+        let dir = dirname(thisFile);
+        for (let i = 0; i < 10; i++) {
+            try {
+                const pkg = JSON.parse(readFileSync(join(dir, 'package.json'), 'utf-8'));
+                if (pkg.name === '@ornexus/neocortex') {
+                    return dir;
+                }
+            }
+            catch { /* no package.json at this level */ }
+            dir = dirname(dir);
+        }
+    }
+    catch { /* fallback */ }
+    return null;
+}
+// -- Version Comparison -------------------------------------------------------
+/**
+ * Read the installed version from .version file in the dest directory.
+ * Returns null if file doesn't exist or is unreadable.
+ */
+function readInstalledVersion(destDir) {
+    try {
+        const versionFile = join(destDir, '.version');
+        if (existsSync(versionFile)) {
+            return readFileSync(versionFile, 'utf-8').trim() || null;
+        }
+    }
+    catch { /* unreadable */ }
+    return null;
+}
+// -- Public API ---------------------------------------------------------------
+/**
+ * Refresh installed stubs if CLI version differs from installed version.
+ *
+ * For each stub target:
+ *   1. Read .version from install dir
+ *   2. Compare with cliVersion
+ *   3. If different (or .version missing): re-copy all stub files + write .version
+ *   4. If same: skip (no-op)
+ *
+ * Never throws -- stub refresh is non-critical.
+ * Returns the number of targets that were refreshed.
+ */
+export function refreshStubs(cliVersion) {
+    try {
+        const packageRoot = findPackageRoot();
+        if (!packageRoot) {
+            return 0;
+        }
+        // targets-stubs/ is at the package root level
+        const stubsRoot = join(packageRoot, 'targets-stubs');
+        if (!existsSync(stubsRoot)) {
+            return 0;
+        }
+        let refreshed = 0;
+        for (const target of STUB_TARGETS) {
+            try {
+                // Only refresh if the dest dir exists (user has this platform installed)
+                if (!existsSync(target.destDir)) {
+                    continue;
+                }
+                const installedVersion = readInstalledVersion(target.destDir);
+                if (installedVersion === cliVersion) {
+                    continue; // Already up to date
+                }
+                // Source directory for this target
+                const sourceDir = join(stubsRoot, target.sourceDir);
+                if (!existsSync(sourceDir)) {
+                    continue;
+                }
+                // Copy each file
+                let copiedAny = false;
+                for (const file of target.files) {
+                    const src = join(sourceDir, file);
+                    const dest = join(target.destDir, file);
+                    if (existsSync(src)) {
+                        mkdirSync(target.destDir, { recursive: true });
+                        copyFileSync(src, dest);
+                        copiedAny = true;
+                    }
+                }
+                // Write .version file
+                if (copiedAny) {
+                    writeFileSync(join(target.destDir, '.version'), cliVersion + '\n', 'utf-8');
+                    refreshed++;
+                }
+            }
+            catch {
+                // Non-critical -- continue with next target
+            }
+        }
+        return refreshed;
+    }
+    catch {
+        // Non-critical -- entire function is best-effort
+        return 0;
+    }
+}
+//# sourceMappingURL=refresh-stubs.js.map

package/packages/client/dist/agent/refresh-stubs.js.map

@@ -0,0 +1 @@
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package/packages/client/dist/agent/update-agent-yaml.d.ts

@@ -0,0 +1,27 @@
+/**
+ * @license FSL-1.1
+ * Copyright (c) 2026 OrNexus AI
+ *
+ * This file is part of Neocortex CLI, licensed under the
+ * Functional Source License, Version 1.1 (FSL-1.1).
+ *
+ * Change Date: February 20, 2029
+ * Change License: MIT
+ *
+ * See the LICENSE file in the project root for full license text.
+ */
+/**
+ * Update agent.yaml files across all known locations.
+ * Returns count of files updated.
+ *
+ * Never throws.
+ */
+export declare function updateAgentYaml(version: string, tier?: string): number;
+/**
+ * Update agent.yaml at a specific file path (used for testing).
+ * Returns true if the file was modified.
+ *
+ * Never throws.
+ */
+export declare function updateAgentYamlAt(filePath: string, version: string, tier?: string): boolean;
+//# sourceMappingURL=update-agent-yaml.d.ts.map

package/packages/client/dist/agent/update-agent-yaml.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"update-agent-yaml.d.ts","sourceRoot":"","sources":["../../src/agent/update-agent-yaml.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAgFH;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,MAAM,CAYtE;AAED;;;;;GAKG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,OAAO,CAE3F"}

package/packages/client/dist/agent/update-agent-yaml.js

@@ -0,0 +1,103 @@
+/**
+ * @license FSL-1.1
+ * Copyright (c) 2026 OrNexus AI
+ *
+ * This file is part of Neocortex CLI, licensed under the
+ * Functional Source License, Version 1.1 (FSL-1.1).
+ *
+ * Change Date: February 20, 2029
+ * Change License: MIT
+ *
+ * See the LICENSE file in the project root for full license text.
+ */
+/**
+ * @neocortex/client - Agent YAML Updater
+ *
+ * Patches neocortex.agent.yaml with current version and tier-based title.
+ *
+ * Patches TWO fields:
+ *   1. version: 'X.X.X'
+ *   2. title: 'Development Orchestrator (Tier)'
+ *
+ * Called after:
+ *   - refreshStubs() (ensures YAML exists with current structure)
+ *   - updateAgentDescription() (ensures consistency across all surfaces)
+ *
+ * Never throws -- YAML update is non-critical.
+ *
+ * Story 55.2
+ */
+import { readFileSync, writeFileSync, existsSync } from 'node:fs';
+import { join } from 'node:path';
+import { homedir } from 'node:os';
+// -- Constants ----------------------------------------------------------------
+const TIER_LABELS = {
+    free: 'Free',
+    pro: 'Pro',
+    enterprise: 'Enterprise',
+};
+// Regex patterns for YAML fields (simple key: 'value' format)
+const VERSION_PATTERN = /^(\s*version:\s*)'[^']*'/m;
+const TITLE_PATTERN = /^(\s*title:\s*)'[^']*'/m;
+const HOME_YAML_FILES = [
+    join(homedir(), '.claude', 'agents', 'neocortex', 'neocortex.agent.yaml'),
+];
+// -- Internal -----------------------------------------------------------------
+/**
+ * Patch a single agent.yaml file with version and tier.
+ * Returns true if file was modified.
+ */
+function patchYamlFile(filePath, version, tier) {
+    try {
+        if (!existsSync(filePath)) {
+            return false;
+        }
+        let content = readFileSync(filePath, 'utf-8');
+        const original = content;
+        const label = TIER_LABELS[tier.toLowerCase()] ?? 'Free';
+        // Patch version
+        if (VERSION_PATTERN.test(content)) {
+            content = content.replace(VERSION_PATTERN, `$1'${version}'`);
+        }
+        // Patch title
+        if (TITLE_PATTERN.test(content)) {
+            content = content.replace(TITLE_PATTERN, `$1'Development Orchestrator (${label})'`);
+        }
+        if (content === original) {
+            return false;
+        }
+        writeFileSync(filePath, content, 'utf-8');
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+// -- Public API ---------------------------------------------------------------
+/**
+ * Update agent.yaml files across all known locations.
+ * Returns count of files updated.
+ *
+ * Never throws.
+ */
+export function updateAgentYaml(version, tier) {
+    const resolvedTier = tier ?? 'free';
+    let updated = 0;
+    // Home-level files
+    for (const filePath of HOME_YAML_FILES) {
+        if (patchYamlFile(filePath, version, resolvedTier)) {
+            updated++;
+        }
+    }
+    return updated;
+}
+/**
+ * Update agent.yaml at a specific file path (used for testing).
+ * Returns true if the file was modified.
+ *
+ * Never throws.
+ */
+export function updateAgentYamlAt(filePath, version, tier) {
+    return patchYamlFile(filePath, version, tier ?? 'free');
+}
+//# sourceMappingURL=update-agent-yaml.js.map

package/packages/client/dist/agent/update-agent-yaml.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"update-agent-yaml.js","sourceRoot":"","sources":["../../src/agent/update-agent-yaml.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH;;;;;;;;;;;;;;;;GAgBG;AAEH,OAAO,EAAE,YAAY,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AAClE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAC;AAElC,gFAAgF;AAEhF,MAAM,WAAW,GAA2B;IAC1C,IAAI,EAAE,MAAM;IACZ,GAAG,EAAE,KAAK;IACV,UAAU,EAAE,YAAY;CACzB,CAAC;AAEF,8DAA8D;AAC9D,MAAM,eAAe,GAAG,2BAA2B,CAAC;AACpD,MAAM,aAAa,GAAG,yBAAyB,CAAC;AAEhD,MAAM,eAAe,GAAG;IACtB,IAAI,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,WAAW,EAAE,sBAAsB,CAAC;CAC1E,CAAC;AAEF,gFAAgF;AAEhF;;;GAGG;AACH,SAAS,aAAa,CAAC,QAAgB,EAAE,OAAe,EAAE,IAAY;IACpE,IAAI,CAAC;QACH,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC1B,OAAO,KAAK,CAAC;QACf,CAAC;QAED,IAAI,OAAO,GAAG,YAAY,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;QAC9C,MAAM,QAAQ,GAAG,OAAO,CAAC;QAEzB,MAAM,KAAK,GAAG,WAAW,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,IAAI,MAAM,CAAC;QAExD,gBAAgB;QAChB,IAAI,eAAe,CAAC,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC;YAClC,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC,eAAe,EAAE,MAAM,OAAO,GAAG,CAAC,CAAC;QAC/D,CAAC;QAED,cAAc;QACd,IAAI,aAAa,CAAC,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC;YAChC,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC,aAAa,EAAE,gCAAgC,KAAK,IAAI,CAAC,CAAC;QACtF,CAAC;QAED,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;YACzB,OAAO,KAAK,CAAC;QACf,CAAC;QAED,aAAa,CAAC,QAAQ,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;QAC1C,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED,gFAAgF;AAEhF;;;;;GAKG;AACH,MAAM,UAAU,eAAe,CAAC,OAAe,EAAE,IAAa;IAC5D,MAAM,YAAY,GAAG,IAAI,IAAI,MAAM,CAAC;IACpC,IAAI,OAAO,GAAG,CAAC,CAAC;IAEhB,mBAAmB;IACnB,KAAK,MAAM,QAAQ,IAAI,eAAe,EAAE,CAAC;QACvC,IAAI,aAAa,CAAC,QAAQ,EAAE,OAAO,EAAE,YAAY,CAAC,EAAE,CAAC;YACnD,OAAO,EAAE,CAAC;QACZ,CAAC;IACH,CAAC;IAED,OAAO,OAAO,CAAC;AACjB,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,iBAAiB,CAAC,QAAgB,EAAE,OAAe,EAAE,IAAa;IAChF,OAAO,aAAa,CAAC,QAAQ,EAAE,OAAO,EAAE,IAAI,IAAI,MAAM,CAAC,CAAC;AAC1D,CAAC"}

package/packages/client/dist/agent/update-description.d.ts

@@ -28,7 +28,9 @@ export declare function buildDescription(version: string, tier: string): string;
  */
 export declare function readTierFromConfig(): string;
 /**
- * Update agent descriptions across ALL home-directory platform files.
+ * Update agent descriptions across ALL known platform files:
+ *   1. Home-level files (Claude Code, Gemini CLI)
+ *   2. Project-level files (Cursor, VSCode, Codex, Antigravity) -- discovered via git root
  *
  * Never throws -- description update is non-critical.
  * Returns count of files updated.

package/packages/client/dist/agent/update-description.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"update-description.d.ts","sourceRoot":"","sources":["../../src/agent/update-description.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AA2FH;;GAEG;AACH,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAGxD;AAID;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,CAGtE;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,IAAI,MAAM,CAW3C;AA0ED;;;;;GAKG;AACH,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,MAAM,CAW7E;AAED;;;;;GAKG;AACH,wBAAgB,wBAAwB,CACtC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,GAAG,IAAI,EACnB,OAAO,EAAE,MAAM,EACf,IAAI,CAAC,EAAE,MAAM,GACZ,OAAO,CAIT"}
+{"version":3,"file":"update-description.d.ts","sourceRoot":"","sources":["../../src/agent/update-description.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAmIH;;GAEG;AACH,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAGxD;AAID;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,CAGtE;AAED;;;GAGG;AACH,wBAAgB,kBAAkB,IAAI,MAAM,CAW3C;AA0ED;;;;;;;GAOG;AACH,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,MAAM,CAyB7E;AAED;;;;;GAKG;AACH,wBAAgB,wBAAwB,CACtC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,GAAG,IAAI,EACnB,OAAO,EAAE,MAAM,EACf,IAAI,CAAC,EAAE,MAAM,GACZ,OAAO,CAIT"}

package/packages/client/dist/agent/update-description.js

@@ -21,12 +21,15 @@
  *   2. ASCII banner version line:  `│      ###  ########      vX.X.X ...│`
  *   3. ASCII banner tier line:     `│ ##   ###  ######  ##    OrNexus Team (Tier) ...│`
  *
- * Supported platforms:
+ * Supported platforms (home-level):
  *   - Claude Code:  ~/.claude/agents/neocortex/neocortex.md  (YAML frontmatter)
  *   - Gemini CLI:   ~/.gemini/agents/agent.md                (YAML frontmatter)
  *
- * Project-level platforms (Cursor, VSCode, Codex, Antigravity) are handled
- * by install.sh at install time, since their paths vary per project.
+ * Supported platforms (project-level, discovered via git root):
+ *   - Cursor:       <root>/.cursor/agents/neocortex.md       (YAML frontmatter)
+ *   - VSCode:       <root>/.github/agents/neocortex.md       (YAML frontmatter)
+ *   - Codex:        <root>/AGENTS.md                         (Markdown H1)
+ *   - Antigravity:  <root>/.agent/skills/neocortex/SKILL.md  (YAML frontmatter)
  *
  * Called after:
  *   - License activation (activate.ts)
@@ -35,6 +38,7 @@
  * Format: 🧠 Neocortex vX.X.X (Tier) | OrNexus Team
  */
 import { readFileSync, writeFileSync, existsSync } from 'node:fs';
+import { execSync } from 'node:child_process';
 import { join } from 'node:path';
 import { homedir } from 'node:os';
 // ── Constants ─────────────────────────────────────────────────────────────
@@ -62,7 +66,6 @@ const BANNER_VERSION_PATTERN = /^│      ###  ########      v[\d.]+\s*│$/m;
 const BANNER_TIER_PATTERN = /^│ ##   ###  ######  ##    OrNexus Team \([^)]*\)\s*│$/m;
 /**
  * All known home-directory agent files, grouped by description format.
- * Project-level files are patched by install.sh (paths vary per project).
  */
 const HOME_AGENT_FILES = [
     // Claude Code (home-level)
@@ -70,6 +73,38 @@ const HOME_AGENT_FILES = [
     // Gemini CLI (home-level)
     { path: join(homedir(), '.gemini', 'agents', 'agent.md'), type: 'yaml' },
 ];
+/**
+ * Known project-level agent file paths (relative to project root).
+ * These are patched after license activation so the tier reflects reality.
+ */
+const PROJECT_AGENT_FILES = [
+    // Cursor
+    { relativePath: join('.cursor', 'agents', 'neocortex.md'), type: 'yaml' },
+    // VSCode / GitHub Copilot
+    { relativePath: join('.github', 'agents', 'neocortex.md'), type: 'yaml' },
+    // Codex
+    { relativePath: 'AGENTS.md', type: 'h1' },
+    // Antigravity
+    { relativePath: join('.agent', 'skills', 'neocortex', 'SKILL.md'), type: 'yaml' },
+];
+// ── Project Root Discovery ────────────────────────────────────────────────
+/**
+ * Discover the git project root, or null if not in a git repo.
+ * Never throws -- returns null on any failure.
+ */
+function discoverProjectRoot() {
+    try {
+        const root = execSync('git rev-parse --show-toplevel', {
+            encoding: 'utf-8',
+            timeout: 5000,
+            stdio: ['pipe', 'pipe', 'pipe'],
+        }).trim();
+        return root || null;
+    }
+    catch {
+        return null;
+    }
+}
 // ── Banner Helpers ────────────────────────────────────────────────────────
 /**
  * Build a right-padded banner line.
@@ -174,7 +209,9 @@ function updateFile(filePath, type, description, version, tier) {
     }
 }
 /**
- * Update agent descriptions across ALL home-directory platform files.
+ * Update agent descriptions across ALL known platform files:
+ *   1. Home-level files (Claude Code, Gemini CLI)
+ *   2. Project-level files (Cursor, VSCode, Codex, Antigravity) -- discovered via git root
  *
  * Never throws -- description update is non-critical.
  * Returns count of files updated.
@@ -183,11 +220,22 @@ export function updateAgentDescription(version, tier) {
     const resolvedTier = tier ?? readTierFromConfig();
     const description = buildDescription(version, resolvedTier);
     let updated = 0;
+    // 1. Home-level files (existing behavior)
     for (const { path, type } of HOME_AGENT_FILES) {
         if (updateFile(path, type, description, version, resolvedTier)) {
             updated++;
         }
     }
+    // 2. Project-level files (discover git root, then check known paths)
+    const projectRoot = discoverProjectRoot();
+    if (projectRoot) {
+        for (const { relativePath, type } of PROJECT_AGENT_FILES) {
+            const fullPath = join(projectRoot, relativePath);
+            if (updateFile(fullPath, type, description, version, resolvedTier)) {
+                updated++;
+            }
+        }
+    }
     return updated;
 }
 /**

package/packages/client/dist/agent/update-description.js.map

@@ -1 +1 @@
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package/packages/client/dist/commands/activate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"activate.d.ts","sourceRoot":"","sources":["../../src/commands/activate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAoDH,MAAM,WAAW,eAAe;IAC9B,qDAAqD;IACrD,QAAQ,CAAC,UAAU,CAAC,EAAE,MAAM,CAAC;IAC7B,uDAAuD;IACvD,QAAQ,CAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAC5B,8BAA8B;IAC9B,QAAQ,CAAC,cAAc,CAAC,EAAE,OAAO,CAAC;CACnC;AAED,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,UAAU,CAAC,EAAE,MAAM,CAAC;CAC9B;AAaD;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,GAAG,EAAE,MAAM,GAAG;IAAE,KAAK,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAmBxF;AA8BD;;;;;;;;;GASG;AACH,wBAAsB,QAAQ,CAAC,OAAO,EAAE,eAAe,GAAG,OAAO,CAAC,cAAc,CAAC,CAoHhF"}
+{"version":3,"file":"activate.d.ts","sourceRoot":"","sources":["../../src/commands/activate.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAsDH,MAAM,WAAW,eAAe;IAC9B,qDAAqD;IACrD,QAAQ,CAAC,UAAU,CAAC,EAAE,MAAM,CAAC;IAC7B,uDAAuD;IACvD,QAAQ,CAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAC5B,8BAA8B;IAC9B,QAAQ,CAAC,cAAc,CAAC,EAAE,OAAO,CAAC;CACnC;AAED,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,UAAU,CAAC,EAAE,MAAM,CAAC;CAC9B;AAaD;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,GAAG,EAAE,MAAM,GAAG;IAAE,KAAK,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAmBxF;AA8BD;;;;;;;;;GASG;AACH,wBAAsB,QAAQ,CAAC,OAAO,EAAE,eAAe,GAAG,OAAO,CAAC,cAAc,CAAC,CA0HhF"}

package/packages/client/dist/commands/activate.js

@@ -27,6 +27,8 @@ import { LicenseClient } from '../license/license-client.js';
 import { EncryptedCache } from '../cache/encrypted-cache.js';
 import { getMachineFingerprint } from '../machine/fingerprint.js';
 import { updateAgentDescription } from '../agent/update-description.js';
+import { refreshStubs } from '../agent/refresh-stubs.js';
+import { updateAgentYaml } from '../agent/update-agent-yaml.js';
 // ── Version Resolution ────────────────────────────────────────────────────
 function getInstalledVersion() {
     try {
@@ -194,10 +196,14 @@ export async function activate(options) {
             message: `Failed to save config to ${CONFIG_FILE}: ${err instanceof Error ? err.message : String(err)}`,
         };
     }
-    // 5. Update agent description with activated tier and version
+    // 5. Refresh stubs if version mismatch detected (Story 55.1)
     const cliVersion = getInstalledVersion();
+    refreshStubs(cliVersion);
+    // 6. Update agent description with activated tier and version
     updateAgentDescription(cliVersion, tier);
-    // 6. Return success
+    // 7. Update agent YAML with version and tier (Story 55.2)
+    updateAgentYaml(cliVersion, tier);
+    // 8. Return success
     return {
         success: true,
         message: [

package/packages/client/dist/commands/activate.js.map

@@ -1 +1 @@
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package/targets-stubs/antigravity/gemini.md

@@ -1,4 +1,4 @@
-# 🧠 Neocortex v3.9.14 (Free) | OrNexus Team
+# 🧠 Neocortex v3.9.16 (Free) | OrNexus Team
 
 This project uses Neocortex, a Development Orchestrator (Free).
 

package/targets-stubs/antigravity/skill/SKILL.md

@@ -1,6 +1,6 @@
 ---
 name: neocortex
-description: "🧠 Neocortex v3.9.14 (Free) | OrNexus Team"
+description: "🧠 Neocortex v3.9.16 (Free) | OrNexus Team"
 ---
 
 # Neocortex - Thin Client Interface

package/targets-stubs/claude-code/neocortex.agent.yaml

@@ -4,7 +4,7 @@ agent:
     name: 'Neocortex'
     title: 'Development Orchestrator (Free)'
     icon: '>'
-    version: '3.9.14'
+    version: '3.9.16'
     architecture: 'thin-client'
     module: stand-alone
     hasSidecar: false

package/targets-stubs/claude-code/neocortex.md

@@ -1,6 +1,6 @@
 ---
 name: neocortex
-description: "🧠 Neocortex v3.9.14 (Free) | OrNexus Team"
+description: "🧠 Neocortex v3.9.16 (Free) | OrNexus Team"
 model: opus
 color: blue
 tools:
@@ -56,7 +56,7 @@ SEMPRE que este agente for invocado, imprima o banner abaixo como PRIMEIRO outpu
 ┌────────────────────────────────────────────────────────────┐
 │                                                            │
 │       #######           N E O C O R T E X                  │
-│      ###  ########      v3.9.14                            │
+│      ###  ########      v3.9.16                            │
 │ #########      #####                                       │
 │ ##    ##############    Development Orchestrator           │
 │ ##   ###  ######  ##    OrNexus Team (Free)                │

package/targets-stubs/codex/agents.md

@@ -1,4 +1,4 @@
-# 🧠 Neocortex v3.9.14 (Free) | OrNexus Team
+# 🧠 Neocortex v3.9.16 (Free) | OrNexus Team
 
 You are a Development Orchestrator (Free). All orchestration logic is delivered by the remote Neocortex server.
 

package/targets-stubs/cursor/agent.md

@@ -1,6 +1,6 @@
 ---
 name: neocortex
-description: "🧠 Neocortex v3.9.14 (Free) | OrNexus Team"
+description: "🧠 Neocortex v3.9.16 (Free) | OrNexus Team"
 model: fast
 readonly: false
 is_background: false
@@ -18,7 +18,7 @@ SEMPRE que este agente for invocado, imprima o banner abaixo como PRIMEIRO outpu
 ┌────────────────────────────────────────────────────────────┐
 │                                                            │
 │       #######           N E O C O R T E X                  │
-│      ###  ########      v3.9.14                            │
+│      ###  ########      v3.9.16                            │
 │ #########      #####                                       │
 │ ##    ##############    Development Orchestrator           │
 │ ##   ###  ######  ##    OrNexus Team (Free)                │

package/targets-stubs/gemini-cli/agent.md

@@ -1,6 +1,6 @@
 ---
 name: neocortex
-description: "🧠 Neocortex v3.9.14 (Free) | OrNexus Team"
+description: "🧠 Neocortex v3.9.16 (Free) | OrNexus Team"
 kind: local
 tools:
   - read_file
@@ -25,7 +25,7 @@ SEMPRE que este agente for invocado, imprima o banner abaixo como PRIMEIRO outpu
 ┌────────────────────────────────────────────────────────────┐
 │                                                            │
 │       #######           N E O C O R T E X                  │
-│      ###  ########      v3.9.14                            │
+│      ###  ########      v3.9.16                            │
 │ #########      #####                                       │
 │ ##    ##############    Development Orchestrator           │
 │ ##   ###  ######  ##    OrNexus Team (Free)                │

package/targets-stubs/vscode/agent.md

@@ -1,6 +1,6 @@
 ---
 name: "neocortex"
-description: "🧠 Neocortex v3.9.14 (Free) | OrNexus Team"
+description: "🧠 Neocortex v3.9.16 (Free) | OrNexus Team"
 tools:
   - readFile
   - editFiles
@@ -26,7 +26,7 @@ SEMPRE que este agente for invocado, imprima o banner abaixo como PRIMEIRO outpu
 ┌────────────────────────────────────────────────────────────┐
 │                                                            │
 │       #######           N E O C O R T E X                  │
-│      ###  ########      v3.9.14                            │
+│      ###  ########      v3.9.16                            │
 │ #########      #####                                       │
 │ ##    ##############    Development Orchestrator           │
 │ ##   ###  ######  ##    OrNexus Team (Free)                │