@origintrail-official/dkg-storage 10.0.7 → 10.0.8

package/LICENSE

@@ -1,201 +1,201 @@
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+                                 Apache License
+                           Version 2.0, January 2004
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+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
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+   1. Definitions.
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+      risks associated with Your exercise of permissions under this License.
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+   8. Limitation of Liability. In no event and under no legal theory,
+      whether in tort (including negligence), contract, or otherwise,
+      unless required by applicable law (such as deliberate and grossly
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+      incidental, or consequential damages of any character arising as a
+      result of this License or out of the use or inability to use the
+      Work (including but not limited to damages for loss of goodwill,
+      work stoppage, computer failure or malfunction, or any and all
+      other commercial damages or losses), even if such Contributor
+      has been advised of the possibility of such damages.
+
+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may choose to offer,
+      and charge a fee for, acceptance of support, warranty, indemnity,
+      or other liability obligations and/or rights consistent with this
+      License. However, in accepting such obligations, You may act only
+      on Your own behalf and on Your sole responsibility, not on behalf
+      of any other Contributor, and only if You agree to indemnify,
+      defend, and hold each Contributor harmless for any liability
+      incurred by, or claims asserted against, such Contributor by reason
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+   See the License for the specific language governing permissions and
+   limitations under the License.

package/README.md

@@ -1,112 +1,112 @@
-# @origintrail-official/dkg-storage
-
-Triple store abstraction layer for DKG V10. Provides a unified API over multiple RDF storage backends with named graph management and private content storage.
-
-## Features
-
-- **Backend adapters** — pluggable triple store implementations:
-  - `OxigraphStore` — embedded WASM/native store, no external dependencies
-  - `OxigraphWorkerStore` — worker-thread variant; keeps the daemon event loop free, with a per-read-operation timeout (see below)
-  - `BlazegraphStore` — connects to a running Blazegraph SPARQL endpoint
-  - `SparqlHttpStore` — generic adapter for any SPARQL 1.1 compliant endpoint
-- **Graph manager** — named graph lifecycle (create, drop, list) with contextGraph-scoped data and metadata graphs
-- **Private content store** — encrypted triple storage for private KA triples, separate from the public graph
-- **Custom adapters** — `registerTripleStoreAdapter()` to plug in any storage backend
-
-## Usage
-
-```typescript
-import { createTripleStore, GraphManager } from '@origintrail-official/dkg-storage';
-
-// In-memory store
-const memStore = await createTripleStore({ backend: 'oxigraph' });
-
-// Persistent store (requires a path)
-const store = await createTripleStore({
-  backend: 'oxigraph-persistent',
-  options: { path: './data' },
-});
-
-const graphs = new GraphManager(store);
-
-await store.insert(quads);
-const result = await store.query('SELECT * WHERE { ?s ?p ?o } LIMIT 10');
-```
-
-## Embedded worker store (`oxigraph-worker`) tuning
-
-The embedded worker runs **all** store operations on a single worker thread, so
-a long-running or stuck op (a huge import, an expensive query) blocks every
-other store-backed request behind it. Under real load this surfaces as the
-daemon's `/api/status` staying green while `/api/query`,
-`/api/context-graph/list`, and `/api/assertion/create` hang. A `store.options`
-knob bounds that blast radius:
-
-| Option | Default | Purpose |
-|---|---|---|
-| `operationTimeoutMs` | `120000` | Reject a **read-only** op (`query`, `hasGraph`, `listGraphs`, `countQuads`) that exceeds this instead of hanging forever — that's where the user-visible hang shows up. `0` disables (restores unbounded behaviour). `close` is exempt — its final flush always runs to completion so shutdown can't drop pending writes. |
-
-Mutations (`insert`, `delete`, …) are intentionally **not** bounded by this
-timeout. The bound only drops the *caller's* promise — the single worker thread
-keeps running the op — so a "timed-out" write could still commit afterwards,
-and the rest of the codebase treats a rejected `insert`/`delete` as a clean
-failure. Bounding only reads surfaces a wedged worker on the paths that hang
-without inventing an indeterminate write outcome. `insert()` therefore stays
-strictly atomic (all quads commit or the call fails), which callers rely on.
-
-```jsonc
-// ~/.dkg/config.json
-"store": {
-  "backend": "oxigraph-worker",
-  "options": { "operationTimeoutMs": 120000 }
-}
-```
-
-For heavy / production workloads, prefer an out-of-process SPARQL server
-(`sparql-http` or `blazegraph`), which handles reads and writes concurrently
-and keeps the daemon responsive under load.
-
-## External-store admission and deadlines
-
-All external adapters share a process-wide priority scheduler. Waiting work is
-bounded independently for `ack`, `normal`, and `background` traffic, and an
-operation rejected before dispatch receives `StoreSchedulerBusyError` with
-`code: STORE_SCHEDULER_BUSY`, `retryable: true`, and a reason of either
-`queue_full` or `queue_wait_timeout`. Because this error is only created before
-the operation closure starts, retrying it cannot duplicate a write that might
-already have reached the store.
-
-| Environment variable | Default | Purpose |
-|---|---:|---|
-| `DKG_STORE_MAX_CONCURRENT` | `8` | Maximum external-store operations in flight. |
-| `DKG_STORE_ACK_RESERVED_SLOTS` | `1` | In-flight capacity reserved for ACK work. |
-| `DKG_STORE_NORMAL_RESERVED_SLOTS` | `1` | Non-ACK capacity kept available for normal work while background operations are in flight. |
-| `DKG_STORE_BACKGROUND_RESERVED_SLOTS` | `1` | Non-ACK capacity reserved for background progress. |
-| `DKG_STORE_QUEUE_LIMIT` | `64` | Maximum waiting operations in each priority queue. |
-| `DKG_STORE_ACK_QUEUE_LIMIT` | common limit | Optional ACK queue override. |
-| `DKG_STORE_NORMAL_QUEUE_LIMIT` | common limit | Optional normal queue override. |
-| `DKG_STORE_BACKGROUND_QUEUE_LIMIT` | common limit | Optional background queue override. |
-| `DKG_STORE_QUEUE_WAIT_TIMEOUT_MS` | `10000` | Maximum pre-dispatch wait before a retryable busy rejection. |
-| `DKG_BLAZEGRAPH_OPERATION_TIMEOUT_MS` | `30000` | Blazegraph end-to-end operation deadline, including scheduler wait, HTTP, response decoding, and mapping. |
-
-Normal and background reserves are normalized against the available non-ACK
-capacity. At least one background slot remains available, and the background
-progress floor is capped to its admission ceiling so conflicting custom values
-cannot leave usable capacity idle.
-
-Blazegraph's deadline can also be set per store, which takes precedence over
-the environment default:
-
-```jsonc
-"store": {
-  "backend": "blazegraph",
-  "options": {
-    "url": "http://127.0.0.1:9999/blazegraph/namespace/dkg/sparql",
-    "timeout": 30000
-  }
-}
-```
-
-## Internal Dependencies
-
-- `@origintrail-official/dkg-core` — configuration types, logging, constants
+# @origintrail-official/dkg-storage
+
+Triple store abstraction layer for DKG V10. Provides a unified API over multiple RDF storage backends with named graph management and private content storage.
+
+## Features
+
+- **Backend adapters** — pluggable triple store implementations:
+  - `OxigraphStore` — embedded WASM/native store, no external dependencies
+  - `OxigraphWorkerStore` — worker-thread variant; keeps the daemon event loop free, with a per-read-operation timeout (see below)
+  - `BlazegraphStore` — connects to a running Blazegraph SPARQL endpoint
+  - `SparqlHttpStore` — generic adapter for any SPARQL 1.1 compliant endpoint
+- **Graph manager** — named graph lifecycle (create, drop, list) with contextGraph-scoped data and metadata graphs
+- **Private content store** — encrypted triple storage for private KA triples, separate from the public graph
+- **Custom adapters** — `registerTripleStoreAdapter()` to plug in any storage backend
+
+## Usage
+
+```typescript
+import { createTripleStore, GraphManager } from '@origintrail-official/dkg-storage';
+
+// In-memory store
+const memStore = await createTripleStore({ backend: 'oxigraph' });
+
+// Persistent store (requires a path)
+const store = await createTripleStore({
+  backend: 'oxigraph-persistent',
+  options: { path: './data' },
+});
+
+const graphs = new GraphManager(store);
+
+await store.insert(quads);
+const result = await store.query('SELECT * WHERE { ?s ?p ?o } LIMIT 10');
+```
+
+## Embedded worker store (`oxigraph-worker`) tuning
+
+The embedded worker runs **all** store operations on a single worker thread, so
+a long-running or stuck op (a huge import, an expensive query) blocks every
+other store-backed request behind it. Under real load this surfaces as the
+daemon's `/api/status` staying green while `/api/query`,
+`/api/context-graph/list`, and `/api/assertion/create` hang. A `store.options`
+knob bounds that blast radius:
+
+| Option | Default | Purpose |
+|---|---|---|
+| `operationTimeoutMs` | `120000` | Reject a **read-only** op (`query`, `hasGraph`, `listGraphs`, `countQuads`) that exceeds this instead of hanging forever — that's where the user-visible hang shows up. `0` disables (restores unbounded behaviour). `close` is exempt — its final flush always runs to completion so shutdown can't drop pending writes. |
+
+Mutations (`insert`, `delete`, …) are intentionally **not** bounded by this
+timeout. The bound only drops the *caller's* promise — the single worker thread
+keeps running the op — so a "timed-out" write could still commit afterwards,
+and the rest of the codebase treats a rejected `insert`/`delete` as a clean
+failure. Bounding only reads surfaces a wedged worker on the paths that hang
+without inventing an indeterminate write outcome. `insert()` therefore stays
+strictly atomic (all quads commit or the call fails), which callers rely on.
+
+```jsonc
+// ~/.dkg/config.json
+"store": {
+  "backend": "oxigraph-worker",
+  "options": { "operationTimeoutMs": 120000 }
+}
+```
+
+For heavy / production workloads, prefer an out-of-process SPARQL server
+(`sparql-http` or `blazegraph`), which handles reads and writes concurrently
+and keeps the daemon responsive under load.
+
+## External-store admission and deadlines
+
+All external adapters share a process-wide priority scheduler. Waiting work is
+bounded independently for `ack`, `normal`, and `background` traffic, and an
+operation rejected before dispatch receives `StoreSchedulerBusyError` with
+`code: STORE_SCHEDULER_BUSY`, `retryable: true`, and a reason of either
+`queue_full` or `queue_wait_timeout`. Because this error is only created before
+the operation closure starts, retrying it cannot duplicate a write that might
+already have reached the store.
+
+| Environment variable | Default | Purpose |
+|---|---:|---|
+| `DKG_STORE_MAX_CONCURRENT` | `8` | Maximum external-store operations in flight. |
+| `DKG_STORE_ACK_RESERVED_SLOTS` | `1` | In-flight capacity reserved for ACK work. |
+| `DKG_STORE_NORMAL_RESERVED_SLOTS` | `1` | Non-ACK capacity kept available for normal work while background operations are in flight. |
+| `DKG_STORE_BACKGROUND_RESERVED_SLOTS` | `1` | Non-ACK capacity reserved for background progress. |
+| `DKG_STORE_QUEUE_LIMIT` | `64` | Maximum waiting operations in each priority queue. |
+| `DKG_STORE_ACK_QUEUE_LIMIT` | common limit | Optional ACK queue override. |
+| `DKG_STORE_NORMAL_QUEUE_LIMIT` | common limit | Optional normal queue override. |
+| `DKG_STORE_BACKGROUND_QUEUE_LIMIT` | common limit | Optional background queue override. |
+| `DKG_STORE_QUEUE_WAIT_TIMEOUT_MS` | `10000` | Maximum pre-dispatch wait before a retryable busy rejection. |
+| `DKG_BLAZEGRAPH_OPERATION_TIMEOUT_MS` | `30000` | Blazegraph end-to-end operation deadline, including scheduler wait, HTTP, response decoding, and mapping. |
+
+Normal and background reserves are normalized against the available non-ACK
+capacity. At least one background slot remains available, and the background
+progress floor is capped to its admission ceiling so conflicting custom values
+cannot leave usable capacity idle.
+
+Blazegraph's deadline can also be set per store, which takes precedence over
+the environment default:
+
+```jsonc
+"store": {
+  "backend": "blazegraph",
+  "options": {
+    "url": "http://127.0.0.1:9999/blazegraph/namespace/dkg/sparql",
+    "timeout": 30000
+  }
+}
+```
+
+## Internal Dependencies
+
+- `@origintrail-official/dkg-core` — configuration types, logging, constants

package/dist/bounded-rdf.js

@@ -128,9 +128,9 @@ async function readExactGraphPagedInternal(store, graphIri, options) {
         quads.length = 0;
         seenNQuadLines.clear();
         nquadsBytes = 0;
-        const result = await store.query(`CONSTRUCT { ?s ?p ?o } WHERE {
-        GRAPH <${graph}> { ?s ?p ?o }
-      }
+        const result = await store.query(`CONSTRUCT { ?s ?p ?o } WHERE {
+        GRAPH <${graph}> { ?s ?p ?o }
+      }
       LIMIT ${expectedQuadCount + 1}`, boundedQueryOptions);
         if (result.type !== 'quads' || !Array.isArray(result.quads)) {
             throw invalidQueryResult(graph, 'Exact blank-node graph read expected CONSTRUCT quads');
@@ -160,11 +160,11 @@ async function readExactGraphPagedInternal(store, graphIri, options) {
     for (;;) {
         const remainingWithOverflowSentinel = expectedQuadCount - quads.length + 1;
         const pageLimit = Math.min(pageSize, remainingWithOverflowSentinel);
-        const result = await store.query(`SELECT ?s ?p ?o WHERE {
-        GRAPH <${graph}> { ?s ?p ?o }
-      }
-      ORDER BY ?s ?p ?o
-      LIMIT ${pageLimit}
+        const result = await store.query(`SELECT ?s ?p ?o WHERE {
+        GRAPH <${graph}> { ?s ?p ?o }
+      }
+      ORDER BY ?s ?p ?o
+      LIMIT ${pageLimit}
       OFFSET ${offset}`, boundedQueryOptions);
         if (result.type !== 'bindings') {
             throw invalidQueryResult(graph, 'Exact graph read expected SELECT bindings');
@@ -253,8 +253,8 @@ function invalidQueryResult(graphIri, message) {
     });
 }
 async function queryExactGraphCount(store, graphIri, maxQuadCount, queryOptions) {
-    const result = await store.query(`SELECT (COUNT(*) AS ?count) WHERE {
-      GRAPH <${graphIri}> { ?s ?p ?o }
+    const result = await store.query(`SELECT (COUNT(*) AS ?count) WHERE {
+      GRAPH <${graphIri}> { ?s ?p ?o }
     }`, queryOptions);
     if (result.type !== 'bindings'
         || !Array.isArray(result.bindings)

package/dist/changelog-store.js

@@ -383,11 +383,11 @@ export class ChangelogStore {
     async readChanges(sinceSeq, limit, options) {
         const since = Number.isFinite(sinceSeq) ? Math.max(0, Math.floor(sinceSeq)) : 0;
         const cap = Number.isFinite(limit) ? Math.max(1, Math.floor(limit)) : 1;
-        const res = await this.inner.query(`SELECT ?seq ?graph ?op WHERE {
-  GRAPH <${CHANGELOG_GRAPH}> {
-    ?e <${P_SEQ}> ?seq ; <${P_GRAPH}> ?graph ; <${P_OP}> ?op .
-    FILTER(?seq > ${since})
-  }
+        const res = await this.inner.query(`SELECT ?seq ?graph ?op WHERE {
+  GRAPH <${CHANGELOG_GRAPH}> {
+    ?e <${P_SEQ}> ?seq ; <${P_GRAPH}> ?graph ; <${P_OP}> ?op .
+    FILTER(?seq > ${since})
+  }
 } ORDER BY ?seq LIMIT ${cap}`, { ...options, source: options?.source ?? 'changelog.readChanges' });
         if (res.type !== 'bindings')
             return [];

package/dist/graph-manager.js

@@ -304,11 +304,11 @@ function sharedMemorySelectionGraphPattern(selection, options) {
         throw new Error(message);
     }
     const values = roots.map((r) => `<${r}>`).join(' ');
-    return `VALUES ?root { ${values} }
-          ?s ?p ?o .
-          FILTER(
-            ?s = ?root
-            || STRSTARTS(STR(?s), CONCAT(STR(?root), "/.well-known/genid/"))
+    return `VALUES ?root { ${values} }
+          ?s ?p ?o .
+          FILTER(
+            ?s = ?root
+            || STRSTARTS(STR(?s), CONCAT(STR(?root), "/.well-known/genid/"))
           )`;
 }
 async function loadSharedMemoryQuadsInternal(store, bucketGraph, selection, options, graphScope) {
@@ -325,9 +325,9 @@ async function loadSharedMemoryQuadsInternal(store, bucketGraph, selection, opti
     if (options.resultBudget) {
         return loadSharedMemoryQuadsPaged(store, graphValues, innerGraphPattern, queryOptions, options);
     }
-    const result = await store.query(`CONSTRUCT { ?s ?p ?o } WHERE {
-        VALUES ?g { ${graphValues} }
-        GRAPH ?g { ${innerGraphPattern} }
+    const result = await store.query(`CONSTRUCT { ?s ?p ?o } WHERE {
+        VALUES ?g { ${graphValues} }
+        GRAPH ?g { ${innerGraphPattern} }
       }`, queryOptions);
     if (result.type !== 'quads')
         return [];
@@ -356,12 +356,12 @@ async function loadSharedMemoryQuadsPaged(store, graphValues, innerGraphPattern,
         getMetrics().storeQueryResultBytesEstimate.record(bytesEstimate, { source });
     };
     for (let offset = 0;; offset += pageRows) {
-        const result = await store.query(`SELECT DISTINCT ?s ?p ?o WHERE {
-      VALUES ?g { ${graphValues} }
-      GRAPH ?g { ${innerGraphPattern} }
-    }
-    ORDER BY ?s ?p ?o
-    OFFSET ${offset}
+        const result = await store.query(`SELECT DISTINCT ?s ?p ?o WHERE {
+      VALUES ?g { ${graphValues} }
+      GRAPH ?g { ${innerGraphPattern} }
+    }
+    ORDER BY ?s ?p ?o
+    OFFSET ${offset}
     LIMIT ${pageRows}`, queryOptions);
         if (result.type !== 'bindings' || result.bindings.length === 0)
             break;
@@ -425,18 +425,18 @@ export async function loadSelectedVerifiableMemoryQuads(store, dataGraph, rootEn
     const vmGraphs = await resolveVerifiableMemoryReadGraphs(store, dataGraph, queryOptions);
     const graphValues = vmGraphs.map((g) => `<${g}>`).join(' ');
     const rootValues = roots.map((root) => sparqlString(root)).join(' ');
-    const result = await store.query(`CONSTRUCT {
-      ?s ?p ?o
-    } WHERE {
-      VALUES ?g { ${graphValues} }
-      GRAPH ?g {
-        VALUES ?rootValue { ${rootValues} }
-        ?s ?p ?o .
-        FILTER(
-          STR(?s) = ?rootValue
-          || STRSTARTS(STR(?s), CONCAT(?rootValue, "/.well-known/genid/"))
-        )
-      }
+    const result = await store.query(`CONSTRUCT {
+      ?s ?p ?o
+    } WHERE {
+      VALUES ?g { ${graphValues} }
+      GRAPH ?g {
+        VALUES ?rootValue { ${rootValues} }
+        ?s ?p ?o .
+        FILTER(
+          STR(?s) = ?rootValue
+          || STRSTARTS(STR(?s), CONCAT(?rootValue, "/.well-known/genid/"))
+        )
+      }
     }`, queryOptions);
     return result.type === 'quads' ? result.quads : [];
 }

package/dist/private-store.js

@@ -90,24 +90,24 @@ export class PrivateContentStore {
             const subjectVals = incomingSubjects
                 .map((s) => `<${assertSafeIri(s)}>`)
                 .join(' ');
-            sparql = `
-        SELECT ?s ?p ?o WHERE {
-          GRAPH ${escapedGraph} {
-            VALUES ?s { ${subjectVals} }
-            VALUES ?p { ${escapedPredicateVals} }
-            ?s ?p ?o .
-          }
-        }
+            sparql = `
+        SELECT ?s ?p ?o WHERE {
+          GRAPH ${escapedGraph} {
+            VALUES ?s { ${subjectVals} }
+            VALUES ?p { ${escapedPredicateVals} }
+            ?s ?p ?o .
+          }
+        }
       `;
         }
         else {
-            sparql = `
-        SELECT ?s ?p ?o WHERE {
-          GRAPH ${escapedGraph} {
-            VALUES ?p { ${escapedPredicateVals} }
-            ?s ?p ?o .
-          }
-        }
+            sparql = `
+        SELECT ?s ?p ?o WHERE {
+          GRAPH ${escapedGraph} {
+            VALUES ?p { ${escapedPredicateVals} }
+            ?s ?p ?o .
+          }
+        }
       `;
         }
         const keys = new Set();
@@ -329,10 +329,10 @@ export class PrivateContentStore {
         assertSafeIri(rootEntity);
         const graphUri = this.privateStagingGraph(contextGraphId, shareOperationId, subGraphName);
         const subject = privateStageSubject(contextGraphId, shareOperationId, rootEntity, subGraphName);
-        const result = await this.store.query(`SELECT ?payload WHERE {
-        GRAPH <${assertSafeIri(graphUri)}> {
-          <${assertSafeIri(subject)}> <http://dkg.io/ontology/privateStagedQuads> ?payload .
-        }
+        const result = await this.store.query(`SELECT ?payload WHERE {
+        GRAPH <${assertSafeIri(graphUri)}> {
+          <${assertSafeIri(subject)}> <http://dkg.io/ontology/privateStagedQuads> ?payload .
+        }
       } LIMIT 1`);
         if (result.type !== 'bindings' || result.bindings.length === 0)
             return [];
@@ -350,16 +350,16 @@ export class PrivateContentStore {
     }
     async getPrivateTriples(contextGraphId, rootEntity, subGraphName) {
         const graphUri = this.privateGraph(contextGraphId, subGraphName);
-        const sparql = `
-      SELECT ?s ?p ?o WHERE {
-        GRAPH <${assertSafeIri(graphUri)}> {
-          ?s ?p ?o .
-          FILTER(
-            ?s = <${assertSafeIri(rootEntity)}>
-            || STRSTARTS(STR(?s), "${escapeSparqlLiteral(rootEntity)}/.well-known/genid/")
-          )
-        }
-      }
+        const sparql = `
+      SELECT ?s ?p ?o WHERE {
+        GRAPH <${assertSafeIri(graphUri)}> {
+          ?s ?p ?o .
+          FILTER(
+            ?s = <${assertSafeIri(rootEntity)}>
+            || STRSTARTS(STR(?s), "${escapeSparqlLiteral(rootEntity)}/.well-known/genid/")
+          )
+        }
+      }
     `;
         const result = await this.store.query(sparql);
         if (result.type !== 'bindings')
@@ -414,10 +414,10 @@ export class PrivateContentStore {
      * stored slice.
      */
     async readPrivateCommitment(graphUri, markerSubject) {
-        const result = await this.store.query(`SELECT ?c WHERE {
-        GRAPH <${assertSafeIri(graphUri)}> {
-          <${assertSafeIri(markerSubject)}> <${PRIVATE_COMMITMENT_PRED}> ?c .
-        }
+        const result = await this.store.query(`SELECT ?c WHERE {
+        GRAPH <${assertSafeIri(graphUri)}> {
+          <${assertSafeIri(markerSubject)}> <${PRIVATE_COMMITMENT_PRED}> ?c .
+        }
       } LIMIT 1`);
         if (result.type !== 'bindings' || result.bindings.length === 0)
             return undefined;

package/package.json

@@ -1,13 +1,13 @@
 {
   "name": "@origintrail-official/dkg-storage",
-  "version": "10.0.7",
+  "version": "10.0.8",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "dependencies": {
     "oxigraph": "^0.5",
-    "@origintrail-official/dkg-core": "10.0.7",
-    "@origintrail-official/dkg-rdf-utils": "10.0.7"
+    "@origintrail-official/dkg-core": "10.0.8",
+    "@origintrail-official/dkg-rdf-utils": "10.0.8"
   },
   "devDependencies": {
     "@vitest/coverage-v8": "^4.0.18",