@origintrail-official/dkg-storage 10.0.6 → 10.0.7

package/README.md

@@ -80,6 +80,7 @@ already have reached the store.
 |---|---:|---|
 | `DKG_STORE_MAX_CONCURRENT` | `8` | Maximum external-store operations in flight. |
 | `DKG_STORE_ACK_RESERVED_SLOTS` | `1` | In-flight capacity reserved for ACK work. |
+| `DKG_STORE_NORMAL_RESERVED_SLOTS` | `1` | Non-ACK capacity kept available for normal work while background operations are in flight. |
 | `DKG_STORE_BACKGROUND_RESERVED_SLOTS` | `1` | Non-ACK capacity reserved for background progress. |
 | `DKG_STORE_QUEUE_LIMIT` | `64` | Maximum waiting operations in each priority queue. |
 | `DKG_STORE_ACK_QUEUE_LIMIT` | common limit | Optional ACK queue override. |
@@ -88,6 +89,11 @@ already have reached the store.
 | `DKG_STORE_QUEUE_WAIT_TIMEOUT_MS` | `10000` | Maximum pre-dispatch wait before a retryable busy rejection. |
 | `DKG_BLAZEGRAPH_OPERATION_TIMEOUT_MS` | `30000` | Blazegraph end-to-end operation deadline, including scheduler wait, HTTP, response decoding, and mapping. |
 
+Normal and background reserves are normalized against the available non-ACK
+capacity. At least one background slot remains available, and the background
+progress floor is capped to its admission ceiling so conflicting custom values
+cannot leave usable capacity idle.
+
 Blazegraph's deadline can also be set per store, which takes precedence over
 the environment default:
 

package/dist/adapters/blazegraph.d.ts

@@ -34,6 +34,8 @@ export declare class BlazegraphStore implements TripleStore {
      * prohibitive on a CPU-pegged core.
      */
     update(sparql: string, options?: UpdateOptions): Promise<void>;
+    replaceGraph(graphUri: string, quads: DKGQuad[], options?: QueryOptions): Promise<void>;
+    replaceGraphAndSubject(graphUri: string, graphQuads: DKGQuad[], metaGraphUri: string, metadataSubject: string, metadataQuads: DKGQuad[], options?: QueryOptions): Promise<void>;
     query(sparql: string, options?: TripleStoreQueryOptions): Promise<QueryResult>;
     private queryConstruct;
     hasGraph(graphUri: string, options?: QueryOptions): Promise<boolean>;

package/dist/adapters/blazegraph.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"blazegraph.d.ts","sourceRoot":"","sources":["../../src/adapters/blazegraph.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EACV,WAAW,EACX,IAAI,IAAI,OAAO,EACf,YAAY,EACZ,aAAa,EACb,qBAAqB,EACrB,uBAAuB,EACvB,WAAW,EAIZ,MAAM,oBAAoB,CAAC;AAuB5B,eAAO,MAAM,uCAAuC,QAAS,CAAC;AAE9D,MAAM,WAAW,sBAAsB;IACrC,qFAAqF;IACrF,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAmHD;;;;;;;GAOG;AACH,qBAAa,eAAgB,YAAW,WAAW;IACjD,QAAQ,CAAC,iBAAiB,EAAG,eAAe,CAAU;IAEtD,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAS;IAC7B,OAAO,CAAC,QAAQ,CAAC,kBAAkB,CAAS;gBAEhC,GAAG,EAAE,MAAM,EAAE,OAAO,GAAE,sBAA2B;IAK7D,OAAO,CAAC,YAAY;IAmCpB,mBAAmB,IAAI,qBAAqB;IAQtC,MAAM,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,OAAO,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC;IA4B/D,MAAM,CAAC,KAAK,EAAE,OAAO,EAAE,EAAE,OAAO,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC;IAa/D,eAAe,CAAC,OAAO,EAAE,OAAO,CAAC,OAAO,CAAC,EAAE,OAAO,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,MAAM,CAAC;IA+BnF,qBAAqB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,MAAM,CAAC;IAiBtG;;;;;;;;;OASG;IACG,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC;IAQ9D,YAAY,CAChB,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,OAAO,EAAE,EAChB,OAAO,CAAC,EAAE,YAAY,GACrB,OAAO,CAAC,IAAI,CAAC;IAwBV,sBAAsB,CAC1B,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,OAAO,EAAE,EACrB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,EACvB,aAAa,EAAE,OAAO,EAAE,EACxB,OAAO,CAAC,EAAE,YAAY,GACrB,OAAO,CAAC,IAAI,CAAC;IAgCV,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,uBAAuB,GAAG,OAAO,CAAC,WAAW,CAAC;YAqDtE,cAAc;IAiCtB,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,OAAO,CAAC;IAQpE,WAAW,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAI7C,SAAS,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC;IAQlE,UAAU,CAAC,OAAO,CAAC,EAAE,uBAAuB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAehE,UAAU,CAAC,QAAQ,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,YAAY,GAAG,OAAO,CAAC,MAAM,CAAC;IAoBtE,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;YAQd,YAAY;CA2B3B"}

package/dist/adapters/blazegraph.js

@@ -4,8 +4,11 @@ import { buildBlankNodeSafeDelete } from './sparql-http.js';
 import { formatSparqlJsonBindings, } from './sparql-json-results.js';
 import { toBlazegraphAsciiSafeNQuads } from './blazegraph-nquads.js';
 import { SPARQL_QUERY_CONTENT_TYPE, SPARQL_UPDATE_CONTENT_TYPE } from './sparql-content-types.js';
-import { assertQuadLiteralsMutf8Safe, JAVA_WRITE_UTF_MAX_BYTES } from '@origintrail-official/dkg-core';
+import { assertQuadLiteralsMutf8Safe, getMetrics, JAVA_WRITE_UTF_MAX_BYTES, } from '@origintrail-official/dkg-core';
 import { externalStorePriorityScheduler } from '../store-priority-scheduler.js';
+import { buildAtomicGraphAndSubjectReplaceUpdate, buildAtomicGraphReplaceUpdate, isAtomicGraphReplaceStagingGraph, } from '../atomic-graph-replace.js';
+import { quadToNQuad } from '../bounded-rdf.js';
+import { readResponseTextBounded } from '../http-response-limit.js';
 export const DEFAULT_BLAZEGRAPH_OPERATION_TIMEOUT_MS = 30_000;
 function parsePositiveIntegerEnv(name, fallback) {
     const raw = process.env[name]?.trim();
@@ -72,7 +75,13 @@ function createStoreOperationDeadline(timeoutMs, callerSignal) {
     const waitFor = async (work) => {
         let result;
         try {
-            result = await raceAgainstAbort(work, controller.signal);
+            // Do not race the operation against the abort signal here. The signal is
+            // already passed to fetch (and therefore to its response body), so the
+            // underlying promise settles only after the HTTP stack has processed the
+            // cancellation. Racing would reject the scheduler task immediately and
+            // release its admission slot while the prior Blazegraph request could
+            // still be unwinding server-side, allowing a retry to overlap it.
+            result = await work;
         }
         catch (error) {
             // The timer callback may be delayed by synchronous response processing.
@@ -97,37 +106,6 @@ function createStoreOperationDeadline(timeoutMs, callerSignal) {
         },
     };
 }
-function raceAgainstAbort(work, signal) {
-    return new Promise((resolve, reject) => {
-        let listening = false;
-        const cleanup = () => {
-            if (!listening)
-                return;
-            listening = false;
-            signal.removeEventListener('abort', onAbort);
-        };
-        const onAbort = () => {
-            cleanup();
-            reject(abortError(signal));
-        };
-        work.then((value) => {
-            cleanup();
-            resolve(value);
-        }, (error) => {
-            cleanup();
-            reject(error);
-        });
-        if (signal.aborted) {
-            onAbort();
-        }
-        else {
-            listening = true;
-            signal.addEventListener('abort', onAbort, { once: true });
-            if (signal.aborted)
-                onAbort();
-        }
-    });
-}
 /**
  * BlazegraphStore — TripleStore adapter backed by a remote Blazegraph
  * SPARQL endpoint over HTTP.  Works with any Blazegraph 2.x instance
@@ -146,13 +124,28 @@ export class BlazegraphStore {
     }
     runStoreWork(operation, options, work) {
         const deadline = createStoreOperationDeadline(this.operationTimeoutMs, options?.signal);
-        const scheduled = externalStorePriorityScheduler.run(options?.priority, options?.source ?? `blazegraph.${operation}`, async () => {
+        const source = options?.source ?? `blazegraph.${operation}`;
+        let admitted = false;
+        const scheduled = externalStorePriorityScheduler.run(options?.priority, source, async () => {
+            admitted = true;
             deadline.check();
             const result = await work(deadline);
             deadline.check();
             return result;
         }, deadline.signal);
-        return scheduled.finally(deadline.dispose);
+        return scheduled
+            .catch((error) => {
+            // This runs only after the admitted work promise has settled. Combined
+            // with StoreOperationDeadline.waitFor awaiting the real fetch/body
+            // promise, the metric means transport cleanup completed before the
+            // caller can launch a retry. Queued work that expired before admission
+            // is intentionally excluded.
+            if (admitted && deadline.signal.aborted) {
+                getMetrics().storeCancellationCompletedTotal.add(1, { operation, source });
+            }
+            throw error;
+        })
+            .finally(deadline.dispose);
     }
     getPressureSnapshot() {
         return externalStorePriorityScheduler.snapshot;
@@ -250,6 +243,36 @@ export class BlazegraphStore {
     async update(sparql, options) {
         await this.sparqlUpdate(sparql, { ...options, source: options?.source ?? 'blazegraph.update' }, 'update');
     }
+    async replaceGraph(graphUri, quads, options) {
+        assertQuadLiteralsMutf8Safe(quads, {
+            maxBytes: JAVA_WRITE_UTF_MAX_BYTES,
+            label: 'BlazegraphStore.replaceGraph',
+        });
+        const plan = buildAtomicGraphReplaceUpdate(graphUri, quads);
+        try {
+            await this.sparqlUpdate(plan.update, { ...options, source: options?.source ?? 'blazegraph.replaceGraph' }, 'replaceGraph');
+        }
+        catch (error) {
+            if (plan.cleanup) {
+                await this.sparqlUpdate(plan.cleanup, { ...options, source: 'blazegraph.replaceGraph.cleanup' }, 'replaceGraphCleanup').catch(() => undefined);
+            }
+            throw error;
+        }
+    }
+    async replaceGraphAndSubject(graphUri, graphQuads, metaGraphUri, metadataSubject, metadataQuads, options) {
+        assertQuadLiteralsMutf8Safe([...graphQuads, ...metadataQuads], {
+            maxBytes: JAVA_WRITE_UTF_MAX_BYTES,
+            label: 'BlazegraphStore.replaceGraphAndSubject',
+        });
+        const plan = buildAtomicGraphAndSubjectReplaceUpdate(graphUri, graphQuads, metaGraphUri, metadataSubject, metadataQuads);
+        try {
+            await this.sparqlUpdate(plan.update, { ...options, source: options?.source ?? 'blazegraph.replaceGraphAndSubject' }, 'replaceGraphAndSubject');
+        }
+        catch (error) {
+            await this.sparqlUpdate(plan.cleanup, { ...options, source: 'blazegraph.replaceGraphAndSubject.cleanup' }, 'replaceGraphAndSubjectCleanup').catch(() => undefined);
+            throw error;
+        }
+    }
     // -------------------------------------------------------------------
     // Queries
     // -------------------------------------------------------------------
@@ -260,7 +283,7 @@ export class BlazegraphStore {
             const isAsk = upper.startsWith('ASK');
             const isConstruct = upper.startsWith('CONSTRUCT') || upper.startsWith('DESCRIBE');
             if (isConstruct) {
-                return this.queryConstruct(trimmed, deadline);
+                return this.queryConstruct(trimmed, deadline, options);
             }
             // Direct POST (W3C SPARQL 1.1 Protocol): send the query as the raw
             // request body with `application/sparql-query` rather than URL-encoded
@@ -280,10 +303,14 @@ export class BlazegraphStore {
                 signal: deadline.signal,
             }));
             if (!res.ok) {
-                const text = await deadline.waitFor(res.text().catch(() => ''));
+                const text = await deadline.waitFor((options?.maxResponseBytes === undefined
+                    ? res.text()
+                    : readResponseTextBounded(res, options.maxResponseBytes)).catch(() => ''));
                 throw new Error(`Blazegraph query failed (${res.status}): ${text.slice(0, 300)}`);
             }
-            const json = await deadline.waitFor(res.json());
+            const json = options?.maxResponseBytes === undefined
+                ? await deadline.waitFor(res.json())
+                : JSON.parse(await deadline.waitFor(readResponseTextBounded(res, options.maxResponseBytes)));
             if (isAsk || 'boolean' in json) {
                 return { type: 'boolean', value: json.boolean };
             }
@@ -291,7 +318,7 @@ export class BlazegraphStore {
             return { type: 'bindings', bindings };
         });
     }
-    async queryConstruct(sparql, deadline) {
+    async queryConstruct(sparql, deadline, options) {
         const res = await deadline.waitFor(fetch(this.url, {
             method: 'POST',
             headers: {
@@ -302,10 +329,14 @@ export class BlazegraphStore {
             signal: deadline.signal,
         }));
         if (!res.ok) {
-            const text = await deadline.waitFor(res.text().catch(() => ''));
+            const text = await deadline.waitFor((options?.maxResponseBytes === undefined
+                ? res.text()
+                : readResponseTextBounded(res, options.maxResponseBytes)).catch(() => ''));
             throw new Error(`Blazegraph construct failed (${res.status}): ${text.slice(0, 300)}`);
         }
-        const text = await deadline.waitFor(res.text());
+        const text = await deadline.waitFor(options?.maxResponseBytes === undefined
+            ? res.text()
+            : readResponseTextBounded(res, options.maxResponseBytes));
         const quads = parseNQuadsText(text);
         deadline.check();
         return { type: 'quads', quads };
@@ -327,7 +358,9 @@ export class BlazegraphStore {
         const r = await this.query('SELECT DISTINCT ?g WHERE { GRAPH ?g { ?s ?p ?o } }', options);
         if (r.type !== 'bindings')
             return [];
-        return r.bindings.map((b) => b.g).filter(Boolean);
+        return r.bindings
+            .map((b) => b.g)
+            .filter((graph) => Boolean(graph) && !isAtomicGraphReplaceStagingGraph(graph));
     }
     // -------------------------------------------------------------------
     // Counts
@@ -383,13 +416,6 @@ export class BlazegraphStore {
 // =====================================================================
 // N-Quad serialisation / parsing helpers (shared with oxigraph adapter)
 // =====================================================================
-function quadToNQuad(q) {
-    const s = formatTerm(q.subject);
-    const p = `<${q.predicate}>`;
-    const o = formatTerm(q.object);
-    const g = q.graph ? ` <${q.graph}>` : '';
-    return `${s} ${p} ${o}${g} .`;
-}
 /**
  * N-Quads serializer for Blazegraph's bulk-insert wire format: a standard
  * N-Quads line ({@link quadToNQuad}) made ASCII-safe

package/dist/adapters/blazegraph.js.map

@@ -1 +1 @@
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package/dist/adapters/oxigraph-worker.d.ts

@@ -147,6 +147,8 @@ export declare class OxigraphWorkerStore implements TripleStore {
     delete(quads: Quad[]): Promise<void>;
     deleteByPattern(pattern: Partial<Quad>): Promise<number>;
     update(sparql: string, _options?: UpdateOptions): Promise<void>;
+    replaceGraph(graphUri: string, quads: Quad[]): Promise<void>;
+    replaceGraphAndSubject(graphUri: string, graphQuads: Quad[], metaGraphUri: string, metadataSubject: string, metadataQuads: Quad[]): Promise<void>;
     query(sparql: string, options?: TripleStoreQueryOptions): Promise<QueryResult>;
     hasGraph(graphUri: string, options?: TripleStoreQueryOptions): Promise<boolean>;
     createGraph(graphUri: string): Promise<void>;

package/dist/adapters/oxigraph-worker.d.ts.map

@@ -1 +1 @@
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package/dist/adapters/oxigraph-worker.js

@@ -567,6 +567,14 @@ export class OxigraphWorkerStore {
         // (`touchedGraphs` hints only membership changes) — unscoped bump.
         this.writeGen.recordUnscopedWrite();
     }
+    async replaceGraph(graphUri, quads) {
+        await this.call('replaceGraph', graphUri, quads);
+        this.writeGen.recordGraphWrites([graphUri]);
+    }
+    async replaceGraphAndSubject(graphUri, graphQuads, metaGraphUri, metadataSubject, metadataQuads) {
+        await this.call('replaceGraphAndSubject', graphUri, graphQuads, metaGraphUri, metadataSubject, metadataQuads);
+        this.writeGen.recordGraphWrites([graphUri, metaGraphUri]);
+    }
     async query(sparql, options) {
         return this.callWithTimeout(this.operationTimeoutMs, options?.signal, 'query', sparql);
     }

package/dist/adapters/oxigraph-worker.js.map

@@ -1 +1 @@
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package/dist/adapters/oxigraph.d.ts

@@ -61,6 +61,8 @@ export declare class OxigraphStore implements TripleStore {
     /** {@link GraphWriteGenSource} capability (#1609) — see graph-write-gen.ts. */
     getWriteGen(graphPrefix: string): number;
     dropGraph(graphUri: string): Promise<void>;
+    replaceGraph(graphUri: string, quads: DKGQuad[]): Promise<void>;
+    replaceGraphAndSubject(graphUri: string, graphQuads: DKGQuad[], metaGraphUri: string, metadataSubject: string, metadataQuads: DKGQuad[]): Promise<void>;
     listGraphs(options?: TripleStoreQueryOptions): Promise<string[]>;
     deleteBySubjectPrefix(graphUri: string, prefix: string): Promise<number>;
     /**

package/dist/adapters/oxigraph.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"oxigraph.d.ts","sourceRoot":"","sources":["../../src/adapters/oxigraph.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EACV,WAAW,EACX,IAAI,IAAI,OAAO,EACf,WAAW,EAIX,uBAAuB,EACvB,aAAa,EACd,MAAM,oBAAoB,CAAC;AAuB5B,qBAAa,aAAc,YAAW,WAAW;IAC/C,QAAQ,CAAC,iBAAiB,EAAG,cAAc,CAAU;IAErD,OAAO,CAAC,KAAK,CAAU;IACvB,OAAO,CAAC,WAAW,CAAqB;IAKxC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAA8B;IAEvD;;;;;OAKG;gBACS,WAAW,CAAC,EAAE,MAAM;IAQhC;;;;;;;;;;;OAWG;IACH,OAAO,CAAC,WAAW;IAsCnB,OAAO,CAAC,UAAU,CAA8C;IAChE,OAAO,CAAC,QAAQ,CAAS;IAEzB,OAAO,CAAC,aAAa;IAkBrB;;;;;;;;;;;;;;;;;;;;;;;OAuBG;YACW,QAAQ;IAsDhB,MAAM,CAAC,KAAK,EAAE,OAAO,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;IA2BvC,MAAM,CAAC,KAAK,EAAE,OAAO,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;IASvC,eAAe,CAAC,OAAO,EAAE,OAAO,CAAC,OAAO,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC;IAgB3D,KAAK,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,uBAAuB,GAAG,OAAO,CAAC,WAAW,CAAC;IAqC9E,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,uBAAuB,GAAG,OAAO,CAAC,OAAO,CAAC;IAY/E,WAAW,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAInD,+EAA+E;IAC/E,WAAW,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM;IAIlC,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAM1C,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;IA6B/D,sBAAsB,CAC1B,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,OAAO,EAAE,EACrB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,EACvB,aAAa,EAAE,OAAO,EAAE,GACvB,OAAO,CAAC,IAAI,CAAC;IA2BV,UAAU,CAAC,OAAO,CAAC,EAAE,uBAAuB,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IAiBhE,qBAAqB,CACzB,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,MAAM,GACb,OAAO,CAAC,MAAM,CAAC;IAWlB;;;;OAIG;IAEG,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC;IAW/D,UAAU,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAYpD;;;;;;;;;;;;;;OAcG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAY5B;;;;;;;;;;;;;OAaG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;CAU7B"}

package/dist/adapters/oxigraph.js

@@ -6,6 +6,8 @@ import { dirname } from 'node:path';
 import { formatCanonicalRdfLiteralTerm, parseRdfLiteralTerm, } from '@origintrail-official/dkg-rdf-utils';
 import { registerTripleStoreAdapter } from '../triple-store.js';
 import { GraphWriteGenTracker } from '../graph-write-gen.js';
+import { buildAtomicGraphAndSubjectReplaceUpdate, buildAtomicGraphReplaceUpdate, isAtomicGraphReplaceStagingGraph, } from '../atomic-graph-replace.js';
+import { quadsToNQuads } from '../bounded-rdf.js';
 import { assertQuadLiteralsMutf8Safe, JAVA_WRITE_UTF_MAX_BYTES } from '@origintrail-official/dkg-core';
 // SWM DATA segment (bucket `…/_shared_memory` + per-KA `…/_shared_memory/{author}/{n}`),
 // NOT the sibling `…/_shared_memory_meta`. Kept in sync with the sync-ingest guard.
@@ -196,7 +198,7 @@ export class OxigraphStore {
                 label: 'OxigraphStore.insert',
             });
         }
-        const nquads = quads.map(quadToNQuad).join('\n') + '\n';
+        const nquads = `${quadsToNQuads(quads)}\n`;
         this.store.load(nquads, { format: 'application/n-quads' });
         this.scheduleFlush();
         this.writeGen.recordGraphWrites(new Set(quads.map((q) => q.graph || '')));
@@ -271,6 +273,56 @@ export class OxigraphStore {
         this.scheduleFlush();
         this.writeGen.recordGraphWrites([graphUri]);
     }
+    async replaceGraph(graphUri, quads) {
+        const guarded = quads.filter((q) => !(q.graph && SHARED_MEMORY_DATA_SEGMENT_RE.test(q.graph)));
+        if (guarded.length > 0) {
+            assertQuadLiteralsMutf8Safe(guarded, {
+                maxBytes: JAVA_WRITE_UTF_MAX_BYTES,
+                label: 'OxigraphStore.replaceGraph',
+            });
+        }
+        const plan = buildAtomicGraphReplaceUpdate(graphUri, quads);
+        try {
+            this.store.update(plan.update);
+        }
+        catch (error) {
+            if (plan.cleanup) {
+                try {
+                    this.store.update(plan.cleanup);
+                }
+                catch {
+                    // Keep the replacement error. Internal staging graphs are hidden
+                    // from enumeration and can be reaped independently.
+                }
+                this.scheduleFlush();
+            }
+            throw error;
+        }
+        this.scheduleFlush();
+        this.writeGen.recordGraphWrites([graphUri]);
+    }
+    async replaceGraphAndSubject(graphUri, graphQuads, metaGraphUri, metadataSubject, metadataQuads) {
+        assertQuadLiteralsMutf8Safe([...graphQuads, ...metadataQuads], {
+            maxBytes: JAVA_WRITE_UTF_MAX_BYTES,
+            label: 'OxigraphStore.replaceGraphAndSubject',
+        });
+        const plan = buildAtomicGraphAndSubjectReplaceUpdate(graphUri, graphQuads, metaGraphUri, metadataSubject, metadataQuads);
+        try {
+            this.store.update(plan.update);
+        }
+        catch (error) {
+            try {
+                this.store.update(plan.cleanup);
+            }
+            catch {
+                // Preserve the compound replacement failure.
+            }
+            this.scheduleFlush();
+            throw error;
+        }
+        this.scheduleFlush();
+        this.writeGen.recordGraphWrites([graphUri, metaGraphUri]);
+    }
     async listGraphs(options) {
         throwIfAborted(options?.signal);
         // Index-read enumeration shared with SparqlHttpStore — see the rationale on
@@ -287,7 +339,7 @@ export class OxigraphStore {
             const g = row.get('g');
             return g ? g.value : '';
         })
-            .filter(Boolean);
+            .filter((graph) => Boolean(graph) && !isAtomicGraphReplaceStagingGraph(graph));
     }
     async deleteBySubjectPrefix(graphUri, prefix) {
         const before = this.store.size;
@@ -378,28 +430,6 @@ function throwIfAborted(signal) {
     const reason = signal.reason;
     throw reason instanceof Error ? reason : new Error(String(reason ?? 'aborted'));
 }
-function quadToNQuad(q) {
-    const s = formatTerm(q.subject);
-    const p = `<${q.predicate}>`;
-    const o = formatTerm(q.object);
-    const g = q.graph ? ` <${q.graph}>` : '';
-    return `${s} ${p} ${o}${g} .`;
-}
-function formatTerm(term) {
-    if (term.startsWith('"')) {
-        // Wrap bare datatype IRIs in angle brackets: "val"^^http://... → "val"^^<http://...>
-        // Anchored to closing quote to avoid matching ^^ inside string content.
-        const m = term.match(/^("(?:[^"\\]|\\.)*")\^\^(?!<)(.+)$/);
-        if (m)
-            return `${m[1]}^^<${m[2]}>`;
-        return term;
-    }
-    if (term.startsWith('_:'))
-        return term;
-    if (term.startsWith('<'))
-        return term;
-    return `<${term}>`;
-}
 function parseTerm(term) {
     if (term.startsWith('"')) {
         const literal = parseRdfLiteralTerm(term);