@orcabus/platform-cdk-constructs 0.0.6 → 0.0.7-alpha.4

package/lambda/layers/mart_tools/poetry.lock

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+]
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+[package.dependencies]
+numpy = {version = ">=1.26.0", markers = "python_version >= \"3.12\""}
+python-dateutil = ">=2.8.2"
+pytz = ">=2020.1"
+tzdata = ">=2022.7"
+
+[package.extras]
+all = ["PyQt5 (>=5.15.9)", "SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "adbc-driver-sqlite (>=0.8.0)", "beautifulsoup4 (>=4.11.2)", "bottleneck (>=1.3.6)", "dataframe-api-compat (>=0.1.7)", "fastparquet (>=2022.12.0)", "fsspec (>=2022.11.0)", "gcsfs (>=2022.11.0)", "html5lib (>=1.1)", "hypothesis (>=6.46.1)", "jinja2 (>=3.1.2)", "lxml (>=4.9.2)", "matplotlib (>=3.6.3)", "numba (>=0.56.4)", "numexpr (>=2.8.4)", "odfpy (>=1.4.1)", "openpyxl (>=3.1.0)", "pandas-gbq (>=0.19.0)", "psycopg2 (>=2.9.6)", "pyarrow (>=10.0.1)", "pymysql (>=1.0.2)", "pyreadstat (>=1.2.0)", "pytest (>=7.3.2)", "pytest-xdist (>=2.2.0)", "python-calamine (>=0.1.7)", "pyxlsb (>=1.0.10)", "qtpy (>=2.3.0)", "s3fs (>=2022.11.0)", "scipy (>=1.10.0)", "tables (>=3.8.0)", "tabulate (>=0.9.0)", "xarray (>=2022.12.0)", "xlrd (>=2.0.1)", "xlsxwriter (>=3.0.5)", "zstandard (>=0.19.0)"]
+aws = ["s3fs (>=2022.11.0)"]
+clipboard = ["PyQt5 (>=5.15.9)", "qtpy (>=2.3.0)"]
+compression = ["zstandard (>=0.19.0)"]
+computation = ["scipy (>=1.10.0)", "xarray (>=2022.12.0)"]
+consortium-standard = ["dataframe-api-compat (>=0.1.7)"]
+excel = ["odfpy (>=1.4.1)", "openpyxl (>=3.1.0)", "python-calamine (>=0.1.7)", "pyxlsb (>=1.0.10)", "xlrd (>=2.0.1)", "xlsxwriter (>=3.0.5)"]
+feather = ["pyarrow (>=10.0.1)"]
+fss = ["fsspec (>=2022.11.0)"]
+gcp = ["gcsfs (>=2022.11.0)", "pandas-gbq (>=0.19.0)"]
+hdf5 = ["tables (>=3.8.0)"]
+html = ["beautifulsoup4 (>=4.11.2)", "html5lib (>=1.1)", "lxml (>=4.9.2)"]
+mysql = ["SQLAlchemy (>=2.0.0)", "pymysql (>=1.0.2)"]
+output-formatting = ["jinja2 (>=3.1.2)", "tabulate (>=0.9.0)"]
+parquet = ["pyarrow (>=10.0.1)"]
+performance = ["bottleneck (>=1.3.6)", "numba (>=0.56.4)", "numexpr (>=2.8.4)"]
+plot = ["matplotlib (>=3.6.3)"]
+postgresql = ["SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "psycopg2 (>=2.9.6)"]
+pyarrow = ["pyarrow (>=10.0.1)"]
+spss = ["pyreadstat (>=1.2.0)"]
+sql-other = ["SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "adbc-driver-sqlite (>=0.8.0)"]
+test = ["hypothesis (>=6.46.1)", "pytest (>=7.3.2)", "pytest-xdist (>=2.2.0)"]
+xml = ["lxml (>=4.9.2)"]
+
+[[package]]
+name = "pluggy"
+version = "1.5.0"
+description = "plugin and hook calling mechanisms for python"
+optional = false
+python-versions = ">=3.8"
+groups = ["dev"]
+files = [
+    {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
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+]
+
+[package.extras]
+dev = ["pre-commit", "tox"]
+testing = ["pytest", "pytest-benchmark"]
+
+[[package]]
+name = "pytest"
+version = "7.4.4"
+description = "pytest: simple powerful testing with Python"
+optional = false
+python-versions = ">=3.7"
+groups = ["dev"]
+files = [
+    {file = "pytest-7.4.4-py3-none-any.whl", hash = "sha256:b090cdf5ed60bf4c45261be03239c2c1c22df034fbffe691abe93cd80cea01d8"},
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+]
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+[package.dependencies]
+colorama = {version = "*", markers = "sys_platform == \"win32\""}
+iniconfig = "*"
+packaging = "*"
+pluggy = ">=0.12,<2.0"
+
+[package.extras]
+testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
+
+[[package]]
+name = "python-dateutil"
+version = "2.9.0.post0"
+description = "Extensions to the standard Python datetime module"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main"]
+files = [
+    {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
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+]
+
+[package.dependencies]
+six = ">=1.5"
+
+[[package]]
+name = "pytz"
+version = "2025.2"
+description = "World timezone definitions, modern and historical"
+optional = false
+python-versions = "*"
+groups = ["main"]
+files = [
+    {file = "pytz-2025.2-py2.py3-none-any.whl", hash = "sha256:5ddf76296dd8c44c26eb8f4b6f35488f3ccbf6fbbd7adee0b7262d43f0ec2f00"},
+    {file = "pytz-2025.2.tar.gz", hash = "sha256:360b9e3dbb49a209c21ad61809c7fb453643e048b38924c765813546746e81c3"},
+]
+
+[[package]]
+name = "six"
+version = "1.17.0"
+description = "Python 2 and 3 compatibility utilities"
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main"]
+files = [
+    {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"},
+    {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"},
+]
+
+[[package]]
+name = "tzdata"
+version = "2025.2"
+description = "Provider of IANA time zone data"
+optional = false
+python-versions = ">=2"
+groups = ["main"]
+files = [
+    {file = "tzdata-2025.2-py2.py3-none-any.whl", hash = "sha256:1a403fada01ff9221ca8044d701868fa132215d84beb92242d9acd2147f667a8"},
+    {file = "tzdata-2025.2.tar.gz", hash = "sha256:b60a638fcc0daffadf82fe0f57e53d06bdec2f36c4df66280ae79bce6bd6f2b9"},
+]
+
+[metadata]
+lock-version = "2.1"
+python-versions = "^3.12, <3.13"
+content-hash = "f95ed101ba379dbb255baf87d17800e50a2e9cb04b2d8f264640fb2ba7bce4d2"

package/lambda/layers/mart_tools/pyproject.toml

@@ -0,0 +1,27 @@
+[build-system]
+requires = ["poetry-core>=1.0.0"]
+build-backend = "poetry.core.masonry.api"
+
+[tool.poetry]
+name = "mart_tools"
+version = "1.0.0"
+description = "A collection of secondary-level functions to use to interact with the OrcaBus"
+license = "GPL-3.0-or-later"
+authors = [
+    "Alexis Lucattini"
+]
+homepage = "https://github.com/orcabus/platform-cdk-constructs"
+repository = "https://github.com/orcabus/platform-cdk-constructs"
+
+[tool.poetry.dependencies]
+python = "^3.12, <3.13"
+pandas = "^2.2.3"
+
+[tool.poetry.group.dev]
+optional = true
+
+[tool.poetry.group.dev.dependencies]
+pytest = "^7.0.0"  # For testing only
+# For typehinting only, not required at runtime
+mypy-boto3-ssm = "^1.34"
+mypy-boto3-secretsmanager = "^1.34"

package/lambda/layers/mart_tools/src/mart_tools/mart/__init__.py

@@ -0,0 +1,8 @@
+#!/usr/bin/env python3
+
+# Set __all__
+from .aws_helpers import run_athena_sql_query
+
+__all__ = [
+    "run_athena_sql_query"
+]

package/lambda/layers/mart_tools/src/mart_tools/mart/aws_helpers.py

@@ -0,0 +1,79 @@
+
+# Standard imports
+import typing
+from io import BytesIO
+from os import environ
+from time import sleep
+from typing import Tuple
+from urllib.parse import urlparse
+import boto3
+import pandas as pd
+
+# Local imports
+from .globals import DATABASE_ENV_VAR, DATA_SOURCE_ENV_VAR, WORKGROUP_ENV_VAR
+
+if typing.TYPE_CHECKING:
+    from mypy_boto3_athena import AthenaClient
+    from mypy_boto3_s3 import S3Client
+
+
+def get_athena_client() -> 'AthenaClient':
+    return boto3.client('athena')
+
+
+def get_s3_client() -> 'S3Client':
+    return boto3.client('s3')
+
+
+def get_bucket_key_tuple_from_s3_uri(s3_uri: str) -> Tuple[str, str]:
+    urlobj = urlparse(s3_uri)
+
+    return urlobj.netloc, urlobj.path.lstrip('/')
+
+
+def run_athena_sql_query(sql_query: str) -> pd.DataFrame:
+    from .dataframe_helpers import get_pandas_dtypes_from_athena_query_execution
+
+    athena_query_execution_id = get_athena_client().start_query_execution(
+        QueryString=sql_query,
+        QueryExecutionContext={
+            "Database": environ[DATABASE_ENV_VAR],
+            "Catalog": environ[DATA_SOURCE_ENV_VAR]
+        },
+        WorkGroup=environ[WORKGROUP_ENV_VAR],
+    )['QueryExecutionId']
+
+    while True:
+        status = get_athena_client().get_query_execution(
+            QueryExecutionId=athena_query_execution_id
+        )['QueryExecution']['Status']['State']
+
+        if status in ['SUCCEEDED', 'FAILED', 'CANCELLED']:
+            break
+
+        sleep(5)
+
+    if status in ['FAILED', 'CANCELLED']:
+        raise RuntimeError(f"Query failed: {status}")
+
+    # Get the result info
+    column_dtypes = get_pandas_dtypes_from_athena_query_execution(
+        query_execution_id=athena_query_execution_id
+    )
+
+    # Get the results
+    result_location = get_athena_client().get_query_execution(
+        QueryExecutionId=athena_query_execution_id
+    )['QueryExecution']['ResultConfiguration']['OutputLocation']
+
+    bucket, key = get_bucket_key_tuple_from_s3_uri(result_location)
+
+    return pd.read_csv(
+        BytesIO(
+            get_s3_client().get_object(
+                Bucket=bucket,
+                Key=key
+            )['Body'].read(),
+        ),
+        dtype=column_dtypes
+    )

package/lambda/layers/mart_tools/src/mart_tools/mart/dataframe_helpers.py

@@ -0,0 +1,29 @@
+#!/usr/bin/env python3
+
+"""
+Collect the mart dataframe but ensuring the correct dtype mappings
+
+We do this by
+
+1. Collecting the ColumnInfo from the query results.
+2. Mapping the 'label' to the 'type'
+3. Then reading the csv from s3, using the dtype mapping coercions
+
+"""
+
+from .models import ATHENA_TO_DTYPES_MAPPING
+
+def get_pandas_dtypes_from_athena_query_execution(query_execution_id):
+    from .aws_helpers import get_athena_client
+
+    column_info_dict = get_athena_client().get_query_results(
+        QueryExecutionId=query_execution_id
+    )['ResultSet']['ResultSetMetadata']['ColumnInfo']
+
+    # Create a dictionary mapping the column name to its type
+    return dict(map(
+        lambda x: (x['Name'], ATHENA_TO_DTYPES_MAPPING.get(x['Type'])),
+        column_info_dict
+    ))
+
+

package/lambda/layers/mart_tools/src/mart_tools/mart/globals.py

@@ -0,0 +1,5 @@
+# Globals
+# ATHENA
+WORKGROUP_ENV_VAR = 'ATHENA_WORKGROUP_NAME'
+DATA_SOURCE_ENV_VAR = 'ATHENA_DATASOURCE_NAME'
+DATABASE_ENV_VAR = 'ATHENA_DATABASE_NAME'

package/lambda/layers/mart_tools/src/mart_tools/mart/models.py

@@ -0,0 +1,71 @@
+#!/usr/bin/env python
+
+from enum import Enum
+from typing import Literal
+
+
+class AthenaDMLTypes(Enum):
+    # https://docs.aws.amazon.com/athena/latest/ug/data-types.html
+    BOOLEAN = 'boolean'
+    TINYINT = 'tinyint'
+    SMALLINT = 'smallint'
+    INT = 'int'
+    INTEGER = 'integer'
+    BIGINT = 'bigint'
+    REAL = 'real'
+    DOUBLE = 'double'
+    DECIMAL = 'decimal'
+    CHAR = 'char'
+    VARCHAR = 'varchar'
+    VARBINARY = 'varbinary'
+    TIME = 'time'
+    TIME_WITH_TIME_ZONE = 'time with time zone'
+    TIMESTAMP = 'timestamp'
+    TIMESTAMP_WITH_TIME_ZONE = 'timestamp with time zone'
+    ARRAY = 'array'
+    MAP = 'map'
+    ROW = 'row'
+    JSON = 'json'
+    UUID = 'uuid'
+    IPADDRESS = 'ipaddress'
+
+
+class PandasDtypes(Enum):
+    # https://numpy.org/doc/stable/reference/arrays.dtypes.html
+
+    # https://pandas.pydata.org/pandas-docs/stable/user_guide/basics.html#dtypes
+    DATETIME_NO_TZ = 'datetime64[ns]'
+    DATETIME_TZ_AWARE = 'datetime64[ns, UTC]'
+    CATEGORICAL = 'category'
+    PERIOD = 'period[<freq>]'
+    SPARSE = 'Sparse'
+    INTERVAL = 'interval'
+    NULLABLE_INTEGER = 'Int64'
+    NULLABLE_FLOAT = 'Float64'
+    STRINGS = 'string'
+    BOOLEAN = 'boolean'
+    OBJECT = 'object'
+
+
+ATHENA_TO_DTYPES_MAPPING = {
+    AthenaDMLTypes.BOOLEAN.value: PandasDtypes.BOOLEAN.value,
+    AthenaDMLTypes.TINYINT.value: PandasDtypes.NULLABLE_INTEGER.value,
+    AthenaDMLTypes.SMALLINT.value: PandasDtypes.NULLABLE_INTEGER.value,
+    AthenaDMLTypes.INT.value: PandasDtypes.NULLABLE_INTEGER.value,
+    AthenaDMLTypes.INTEGER.value: PandasDtypes.NULLABLE_INTEGER.value,
+    AthenaDMLTypes.BIGINT.value: PandasDtypes.NULLABLE_INTEGER.value,
+    AthenaDMLTypes.REAL.value: PandasDtypes.NULLABLE_FLOAT.value,
+    AthenaDMLTypes.DOUBLE.value: PandasDtypes.NULLABLE_FLOAT.value,
+    AthenaDMLTypes.DECIMAL.value: PandasDtypes.NULLABLE_FLOAT.value,
+    AthenaDMLTypes.CHAR.value: PandasDtypes.STRINGS.value,
+    AthenaDMLTypes.VARCHAR.value: PandasDtypes.STRINGS.value,
+    AthenaDMLTypes.VARBINARY.value: PandasDtypes.STRINGS.value,
+    AthenaDMLTypes.TIMESTAMP.value: PandasDtypes.DATETIME_NO_TZ.value,
+    AthenaDMLTypes.TIMESTAMP_WITH_TIME_ZONE.value: PandasDtypes.DATETIME_TZ_AWARE.value,
+    AthenaDMLTypes.ARRAY.value: PandasDtypes.OBJECT.value,
+    AthenaDMLTypes.MAP.value: PandasDtypes.OBJECT.value,
+    AthenaDMLTypes.ROW.value: PandasDtypes.OBJECT.value,
+    AthenaDMLTypes.JSON.value: PandasDtypes.OBJECT.value,
+    AthenaDMLTypes.UUID.value: PandasDtypes.STRINGS.value,
+    AthenaDMLTypes.IPADDRESS.value: PandasDtypes.STRINGS.value,
+}