@orcabus/platform-cdk-constructs 0.0.58 → 0.0.60

package/.jsii

@@ -6840,6 +6840,6 @@
       "symbolId": "shared-config/slack:SlackAlerts"
     }
   },
-  "version": "0.0.58",
-  "fingerprint": "oUicVWk/fEb55CHpTf57ODWtvoaQMNtBCt5rsPu4qXc="
+  "version": "0.0.60",
+  "fingerprint": "vktH8B5/YX36fd6cGBqnrIiHGmT6m33RPzKFNi//MWs="
 }

package/api-gateway/api-gateway.js

@@ -15,7 +15,7 @@ const aws_lambda_1 = require("aws-cdk-lib/aws-lambda");
 const aws_route53_targets_1 = require("aws-cdk-lib/aws-route53-targets");
 const config_1 = require("./config");
 class OrcaBusApiGateway extends constructs_1.Construct {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.apigateway.OrcaBusApiGateway", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.apigateway.OrcaBusApiGateway", version: "0.0.60" };
     /**
      * The AWS region where the API Gateway is deployed.
      */

package/deployment-stack-pipeline/artifact-bucket.js

@@ -13,7 +13,7 @@ exports.CROSS_DEPLOYMENT_ARTIFACT_BUCKET_NAME = "orcabus-cross-deployment-codepi
 exports.CROSS_DEPLOYMENT_ARTIFACT_KMS_ALIAS = "orcabus-cross-deployment-codepipeline-artifact";
 exports.CROSS_DEPLOYMENT_ARTIFACT_KMS_ARN_SSM_PARAMETER_NAME = "/orcabus/deployment-stack-pipeline/artifact-bucket/kms-key-arn";
 class CrossDeploymentArtifactBucket extends constructs_1.Construct {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.deploymentPipeline.CrossDeploymentArtifactBucket", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.deploymentPipeline.CrossDeploymentArtifactBucket", version: "0.0.60" };
     /**
      * The S3 bucket used to store artifacts for cross-deployment pipelines.
      */

package/deployment-stack-pipeline/pipeline.js

@@ -32,7 +32,7 @@ exports.DEFAULT_SYNTH_STEP_PARTIAL_BUILD_SPEC = {
  * before using this construct.
  */
 class DeploymentStackPipeline extends constructs_1.Construct {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.deploymentPipeline.DeploymentStackPipeline", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.deploymentPipeline.DeploymentStackPipeline", version: "0.0.60" };
     /**
      * The code pipeline construct that is created.
      */

package/dynamodb/index.js

@@ -40,7 +40,7 @@ const dynamodb = __importStar(require("aws-cdk-lib/aws-dynamodb"));
 const aws_cdk_lib_1 = require("aws-cdk-lib");
 const config_1 = require("./config");
 class DynamoDbPartitionedConstruct extends constructs_1.Construct {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.dynamodb.DynamoDbPartitionedConstruct", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.dynamodb.DynamoDbPartitionedConstruct", version: "0.0.60" };
     table;
     constructor(scope, id, props) {
         super(scope, id);
@@ -75,7 +75,7 @@ class DynamoDbPartitionedConstruct extends constructs_1.Construct {
 }
 exports.DynamoDbPartitionedConstruct = DynamoDbPartitionedConstruct;
 class DynamoDbNonPartitionedConstruct extends constructs_1.Construct {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.dynamodb.DynamoDbNonPartitionedConstruct", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.dynamodb.DynamoDbNonPartitionedConstruct", version: "0.0.60" };
     table;
     constructor(scope, id, props) {
         super(scope, id);

package/ecs/index.js

@@ -55,7 +55,7 @@ exports.LAMBDA_ARCHITECTURE_MAP = {
     ['ARM64']: lambda.Architecture.ARM_64
 };
 class EcsFargateTaskConstruct extends constructs_1.Construct {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.ecs.EcsFargateTaskConstruct", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.ecs.EcsFargateTaskConstruct", version: "0.0.60" };
     cluster;
     taskDefinition;
     taskExecutionRole;

package/lambda/index.js

@@ -56,7 +56,7 @@ function getPythonUvDockerImage() {
     return aws_cdk_lib_1.DockerImage.fromBuild(path_1.default.join(__dirname, 'build_python'));
 }
 class PythonUvFunction extends aws_lambda_python_alpha_1.PythonFunction {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.lambda.PythonUvFunction", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.lambda.PythonUvFunction", version: "0.0.60" };
     // Class constructs, to be used for caching the layers
     // This means that if there are multiple lambdas throughout the stack
     // They will all use the same layer

package/lambda/layers/icav2_tools/pyproject.toml

@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
 [tool.poetry]
 name = "icav2_tools"
 version = "1.0.0"
-description = "Useful layer for python lambdas that use ICAv2, smart-collection of the ICAv2 access token"
+description = "Useful layer for python lambdas that use ICAv2, smart-collection of the ICAv2 access token and other env vars"
 license = "GPL-3.0-or-later"
 authors = [
     "Alexis Lucattini"
@@ -15,7 +15,7 @@ repository = "https://github.com/orcabus/platform-cdk-constructs"
 
 [tool.poetry.dependencies]
 python = ">3.12,<3.13"
-wrapica = "2.37.0"
+wrapica = "2.38.0.dev20250813155848"
 
 [tool.poetry.group.dev]
 optional = true
@@ -29,7 +29,7 @@ mypy-boto3-secretsmanager = ">=1.34.0, <2"
 name = "PyPI"
 priority = "primary"
 
-#[[tool.poetry.source]]
-#name = "testpypi"
-#url = "https://test.pypi.org/simple/"
-#priority = "supplemental"
+[[tool.poetry.source]]
+name = "testpypi"
+url = "https://test.pypi.org/simple/"
+priority = "supplemental"

package/lambda/layers/icav2_tools/src/icav2_tools/__init__.py

@@ -1,17 +1,79 @@
 #!/usr/bin/env python
 
-from .aws_helpers import get_icav2_access_token
+# Standard imports
 from os import environ
+from tempfile import NamedTemporaryFile
+from ruamel.yaml import YAML
+from pathlib import Path
+
+# Local imports
+from .aws_helpers import (
+    get_icav2_access_token,
+    get_storage_configuration_list,
+    get_project_to_storage_configuration_list,
+    get_storage_credential_list
+)
 from .globals import ICAV2_BASE_URL
 
 
+def create_storage_configuration_file() -> Path:
+    storage_configuration_file = Path(NamedTemporaryFile(
+        delete=False,
+        prefix='storage-configuration',
+        suffix='.yaml'
+    ).name)
+    yaml = YAML()
+    with open(storage_configuration_file, 'w') as file_h:
+        yaml.dump(
+            get_storage_configuration_list(),
+            file_h
+        )
+    return storage_configuration_file
+
+
+def create_project_to_storage_configuration_mapping_file() -> Path:
+    project_to_storage_configuration_file = Path(NamedTemporaryFile(
+        delete=False,
+        prefix='project-to-storage-configuration',
+        suffix='.yaml'
+    ).name)
+    yaml = YAML()
+    with open(project_to_storage_configuration_file, 'w') as file_h:
+        yaml.dump(
+            get_project_to_storage_configuration_list(),
+            file_h
+        )
+    return project_to_storage_configuration_file
+
+
+def create_storage_credential_file() -> Path:
+    storage_credential_file = Path(NamedTemporaryFile(
+        delete=False,
+        prefix='storage-credential',
+        suffix='.yaml'
+    ).name)
+    yaml = YAML()
+    with open(storage_credential_file, 'w') as file_h:
+        yaml.dump(
+            get_storage_credential_list(),
+            file_h
+        )
+    return storage_credential_file
+
+
 def set_icav2_env_vars():
     """
     Set the environment variables for the ICAV2 API
     :return:
     """
-    environ["ICAV2_ACCESS_TOKEN"] = get_icav2_access_token()
+    # Standard environment variables
     environ["ICAV2_BASE_URL"] = ICAV2_BASE_URL
+    environ["ICAV2_ACCESS_TOKEN"] = get_icav2_access_token()
+
+    # Configuration files needed to map storage configurations
+    environ["ICAV2_STORAGE_CONFIGURATION_LIST_FILE"] = str(create_storage_configuration_file())
+    environ["ICAV2_PROJECT_TO_STORAGE_CONFIGURATION_MAPPING_LIST_FILE"] = str(create_project_to_storage_configuration_mapping_file())
+    environ["ICAV2_STORAGE_CREDENTIAL_LIST_FILE"] = str(create_storage_credential_file())
 
 
 __all__ = [

package/lambda/layers/icav2_tools/src/icav2_tools/aws_helpers.py

@@ -2,21 +2,29 @@
 
 # Standard imports
 import typing
-from typing import Optional
+from typing import Optional, List, cast
 import boto3
 import json
 from os import environ
 import urllib3
 from urllib.parse import urlunparse
 
+# Wrapica imports
+from wrapica.storage_configuration import StorageConfigurationObjectModel, ProjectToStorageMappingDictModel
+from wrapica.storage_credentials import StorageCredentialMappingModel
 
 # Type hinting
 if typing.TYPE_CHECKING:
     from mypy_boto3_secretsmanager import SecretsManagerClient
     from mypy_boto3_ssm import SSMClient
+    from mypy_boto3_ssm.type_defs import GetParametersByPathResultTypeDef, ParameterTypeDef
 
 # Set globals
-from .globals import ICAV2_BASE_URL
+from .globals import (
+    STORAGE_CONFIGURATIONS_SSM_PATH,
+    STORAGE_CREDENTIALS_SSM_PATH,
+    PROJECT_TO_STORAGE_CONFIGURATION_SSM_PATH
+)
 
 http = urllib3.PoolManager()
 
@@ -26,7 +34,8 @@ SECRETS_URL = '/secretsmanager/get/'
 
 def retrieve_extension_value(url, query):
     url = str(urlunparse((
-        'http', f'localhost:{LOCAL_HTTP_CACHE_PORT}',
+        'http',
+        f'localhost:{LOCAL_HTTP_CACHE_PORT}',
         url, None,
         "&".join(list(map(
             lambda kv: f"{kv[0]}={kv[1]}",
@@ -55,6 +64,21 @@ def get_ssm_value_from_cache(parameter_name: str) -> Optional[str]:
         return None
 
 
+def get_ssm_list_from_cache(path: str) -> Optional[List[str]]:
+    try:
+        return retrieve_extension_value(
+            PARAMETER_URL,
+            {
+                "path": path,
+                "recursive": "true",
+            }
+        )
+    except Exception as e:
+        print("Got an exception while trying to get ssm list from cache")
+        print(e)
+        return None
+
+
 def get_secret_value_from_cache(secret_id: str) -> Optional[str]:
     try:
         return retrieve_extension_value(
@@ -108,9 +132,86 @@ def get_ssm_value(parameter_name) -> str:
     return get_ssm_parameter_response['Parameter']['Value']
 
 
+def get_ssm_parameters_list_by_path(parameter_path: str) -> List['ParameterTypeDef']:
+    """
+    We cannot use the cache for this function because we don't know what we're missing
+    :param parameter_path:
+    :return:
+    """
+
+    next_token = None
+    ssm_response_list = []
+
+    while True:
+        ssm_response: 'GetParametersByPathResultTypeDef' = get_ssm_client().get_parameters_by_path(
+            **dict(filter(
+                lambda kv_iter_: kv_iter_[1] is not None,
+                {
+                    "Path": parameter_path,
+                    "Recursive": True,
+                    "NextToken": next_token,
+                    "MaxResults": 10,
+                }.items()
+            ))
+        )
+        ssm_response_list.extend(
+            ssm_response['Parameters']
+        )
+
+        if "NextToken" in ssm_response:
+            next_token = ssm_response["NextToken"]
+        else:
+            break
+
+    return ssm_response_list
+
+
 def get_icav2_access_token() -> str:
     """
     From the AWS Secrets Manager, retrieve the OrcaBus token.
     :return:
     """
     return get_secret_value(environ.get("ICAV2_ACCESS_TOKEN_SECRET_ID"))
+
+
+def get_storage_configuration_list() -> List['StorageConfigurationObjectModel']:
+    """
+    Storage configuration list is a list of storage configurations
+    :return:
+    """
+    # Get the ssm parameter list
+    storage_configuration_ssm_parameter_list = get_ssm_parameters_list_by_path(str(STORAGE_CONFIGURATIONS_SSM_PATH) + "/")
+
+    return list(map(
+        lambda ssm_parameter_obj_iter: cast(
+            StorageConfigurationObjectModel,
+            json.loads(ssm_parameter_obj_iter['Value'])
+        ),
+        storage_configuration_ssm_parameter_list
+    ))
+
+
+def get_project_to_storage_configuration_list() -> List['ProjectToStorageMappingDictModel']:
+    # Get the ssm parameter list
+    project_to_storage_ssm_parameter_list = get_ssm_parameters_list_by_path(str(PROJECT_TO_STORAGE_CONFIGURATION_SSM_PATH) + "/")
+
+    return list(map(
+        lambda ssm_parameter_obj_iter: cast(
+            ProjectToStorageMappingDictModel,
+            json.loads(ssm_parameter_obj_iter['Value'])
+        ),
+        project_to_storage_ssm_parameter_list
+    ))
+
+
+def get_storage_credential_list() -> List['StorageCredentialMappingModel']:
+    # Get the ssm parameter list
+    storage_credential_ssm_parameter_list = get_ssm_parameters_list_by_path(str(STORAGE_CREDENTIALS_SSM_PATH) + "/")
+
+    return list(map(
+        lambda ssm_parameter_obj_iter: cast(
+            StorageCredentialMappingModel,
+            json.loads(ssm_parameter_obj_iter['Value'])
+        ),
+        storage_credential_ssm_parameter_list
+    ))

package/lambda/layers/icav2_tools/src/icav2_tools/globals.py

@@ -1,2 +1,15 @@
+from pathlib import Path
+
 # Set ICAV2 Base url
 ICAV2_BASE_URL = "https://ica.illumina.com/ica/rest"
+
+# Tenant name
+TENANT_NAME = "umccr-prod"
+
+# SSM Parameter paths
+SSM_PATH_ROOT = Path("/icav2") / TENANT_NAME
+
+# SSM paths for various configurations
+STORAGE_CONFIGURATIONS_SSM_PATH = SSM_PATH_ROOT / "storage-configurations"
+PROJECT_TO_STORAGE_CONFIGURATION_SSM_PATH = SSM_PATH_ROOT / "project-to-storage-configurations"
+STORAGE_CREDENTIALS_SSM_PATH = SSM_PATH_ROOT / "storage-credentials"

package/monitored-queue/index.js

@@ -13,7 +13,7 @@ const aws_cloudwatch_actions_1 = require("aws-cdk-lib/aws-cloudwatch-actions");
  * SNS topic.
  */
 class MonitoredQueue extends constructs_1.Construct {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.monitoredQueue.MonitoredQueue", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.monitoredQueue.MonitoredQueue", version: "0.0.60" };
     queue;
     deadLetterQueue;
     alarm;

package/named-lambda-role/index.js

@@ -7,7 +7,7 @@ const aws_iam_1 = require("aws-cdk-lib/aws-iam");
  * A construct which represents a named role that a Lambda function can assume.
  */
 class NamedLambdaRole extends aws_iam_1.Role {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.namedLambdaRole.NamedLambdaRole", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.namedLambdaRole.NamedLambdaRole", version: "0.0.60" };
     constructor(scope, id, props) {
         super(scope, id, {
             assumedBy: new aws_iam_1.ServicePrincipal("lambda.amazonaws.com"),

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@orcabus/platform-cdk-constructs",
-  "version": "0.0.58",
+  "version": "0.0.60",
   "description": "CDK Package for OrcaBus infrastructure.",
   "main": "index.ts",
   "types": "index.d.ts",

package/provider-function/index.js

@@ -15,7 +15,7 @@ const aws_cdk_lib_1 = require("aws-cdk-lib");
  * to the provider framework.
  */
 class ProviderFunction extends constructs_1.Construct {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.provider.ProviderFunction", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.provider.ProviderFunction", version: "0.0.60" };
     _function;
     _response;
     constructor(scope, id, props) {

package/shared-config/file-manager.js

@@ -30,6 +30,7 @@ exports.FILE_MANAGER_BUCKETS = {
         `data-sharing-artifacts-${deployment_stack_pipeline_1.PROD_ENVIRONMENT.account}-${deployment_stack_pipeline_1.PROD_ENVIRONMENT.region}`,
         `pipeline-montauk-977251586657-${deployment_stack_pipeline_1.PROD_ENVIRONMENT.region}`,
         "research-data-550435500918-ap-southeast-2",
+        "test-data-503977275616-ap-southeast-2",
     ],
 };
 exports.FILE_MANAGER_CACHE_BUCKETS = {
@@ -47,4 +48,4 @@ exports.FILE_MANAGER_ACCESS_KEY_ARNS = {
 exports.FILE_MANAGER_INGEST_ROLE = "orcabus-file-manager-ingest-role";
 exports.FILE_MANAGER_PRESIGN_USER = "orcabus-file-manager-presign-user"; // pragma: allowlist secret
 exports.FILE_MANAGER_DOMAIN_PREFIX = "file";
-//# 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+//# 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package/shared-config/networking.js

@@ -23,7 +23,7 @@ exports.VPC_LOOKUP_PROPS = {
  * Helper for looking up the shared OrcaBus VPC.
  */
 class OrcaBusVpc {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.sharedConfig.networking.OrcaBusVpc", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.sharedConfig.networking.OrcaBusVpc", version: "0.0.60" };
     /**
      * The shared VPC that is used by OrcaBus.
      * @param scope
@@ -42,7 +42,7 @@ exports.SHARED_SECURITY_GROUP_NAME = "OrcaBusSharedComputeSecurityGroup";
  * Helper for looking up the shared compute security group by name.
  */
 class OrcaBusSharedComputeSecurityGroup {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.sharedConfig.networking.OrcaBusSharedComputeSecurityGroup", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.sharedConfig.networking.OrcaBusSharedComputeSecurityGroup", version: "0.0.60" };
     /**
      * The shared security group that is used by compute resources to access the database.
      * @param scope

package/shared-config/slack.js

@@ -11,7 +11,7 @@ exports.SLACK_ALERTS_SNS_TOPIC = "AwsChatBotTopic-alerts";
  * A helper class to construct the arn for the slack SNS topic.
  */
 class SlackAlerts {
-    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.sharedConfig.slack.SlackAlerts", version: "0.0.58" };
+    static [JSII_RTTI_SYMBOL_1] = { fqn: "@orcabus/platform-cdk-constructs.sharedConfig.slack.SlackAlerts", version: "0.0.60" };
     /**
      * Format the ARN for the slack alerts SNS topic for the current stack.
      * @param stack